RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 EHHADHQ08426 723 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 CDK5R2Q13319 367 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 ORC1Q13415 861 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 MAP7Q14244 749 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 KCNMB1Q16558 191 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 TSNAXIP1Q2TAA8 658 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 ZNF326Q5BKZ1 582 aaKnown RBP2.7□□□□□ -1.98
USP3-209ENST00000558925 GGNQ86UU5 652 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 ABTB2Q8N961 1025 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 NETO1Q8TDF5 533 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 PIK3R5Q8WYR1 880 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 NXPE3Q969Y0 559 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 NUDT16Q96DE0 195 aaKnown RBP2.7□□□□□ -1.98
USP3-209ENST00000558925 PPP1R16BQ96T49 567 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 FAM129BQ96TA1 746 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 NIF3L1Q9GZT8 377 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 CHRDQ9H2X0 955 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 GGNBP2Q9H3C7 697 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 GSX1Q9H4S2 264 aaPredicted RBP2.7□□□□□ -1.98
USP3-209ENST00000558925 ELP3Q9H9T3 547 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 VAV3Q9UKW4 847 aa2.7□□□□□ -1.98
USP3-209ENST00000558925 A0A0G2JLL6 359 aaPredicted RBP2.69□□□□□ -1.98
USP3-209ENST00000558925 PNMA6FA0A0J9YX94 578 aa2.69□□□□□ -1.98
USP3-209ENST00000558925 FAM177BA6PVY3 158 aa2.69□□□□□ -1.98
USP3-209ENST00000558925 TCF3P15923 654 aa2.69□□□□□ -1.98
USP3-209ENST00000558925 BRD2P25440 801 aaKnown RBP2.69□□□□□ -1.98
USP3-209ENST00000558925 MZF1P28698 734 aaPredicted RBP2.69□□□□□ -1.98
USP3-209ENST00000558925 AOC3Q16853 763 aa2.69□□□□□ -1.98
USP3-209ENST00000558925 LDLRAD1Q5T700 205 aa2.69□□□□□ -1.98
USP3-209ENST00000558925 USPL1Q5W0Q7 1092 aa2.69□□□□□ -1.98
USP3-209ENST00000558925 ALKBH2Q6NS38 261 aa2.69□□□□□ -1.98
USP3-209ENST00000558925 SLC23A3Q6PIS1 610 aa2.69□□□□□ -1.98
USP3-209ENST00000558925 DYMQ7RTS9 669 aa2.69□□□□□ -1.98
USP3-209ENST00000558925 GJD3Q8N144 294 aa2.69□□□□□ -1.98
USP3-209ENST00000558925 TMEM102Q8N9M5 508 aaPredicted RBP2.69□□□□□ -1.98
USP3-209ENST00000558925 BSNDQ8WZ55 320 aa2.69□□□□□ -1.98
USP3-209ENST00000558925 CSRNP1Q96S65 589 aa2.69□□□□□ -1.98
USP3-209ENST00000558925 DUSP9Q99956 384 aaKnown RBP2.69□□□□□ -1.98
USP3-209ENST00000558925 ZKSCAN3Q9BRR0 538 aa2.69□□□□□ -1.98
USP3-209ENST00000558925 YIPF2Q9BWQ6 316 aa2.69□□□□□ -1.98
USP3-209ENST00000558925 SOX17Q9H6I2 414 aaPredicted RBP2.69□□□□□ -1.98
USP3-209ENST00000558925 CD320Q9NPF0 282 aa2.69□□□□□ -1.98
USP3-209ENST00000558925 UTP3Q9NQZ2 479 aaKnown RBP eCLIP2.69□□□□□ -1.98
USP3-209ENST00000558925 CTNND2Q9UQB3 1225 aa2.69□□□□□ -1.98
USP3-209ENST00000558925 DAGLAQ9Y4D2 1042 aa2.69□□□□□ -1.98
USP3-209ENST00000558925 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP2.68□□□□□ -1.98
USP3-209ENST00000558925 LOC105371045A0A1W2PR82 267 aa2.68□□□□□ -1.98
USP3-209ENST00000558925 METTL12A8MUP2 240 aa2.68□□□□□ -1.98
USP3-209ENST00000558925 LEFTY1O75610 366 aa2.68□□□□□ -1.98
USP3-209ENST00000558925 FAM87AP0C7U9 286 aa2.68□□□□□ -1.98
USP3-209ENST00000558925 ASPAP45381 313 aa2.68□□□□□ -1.98
USP3-209ENST00000558925 OXCT1P55809 520 aa2.68□□□□□ -1.98
USP3-209ENST00000558925 NFKB2Q00653 900 aa2.68□□□□□ -1.98
USP3-209ENST00000558925 PLCB3Q01970 1234 aa2.68□□□□□ -1.98
USP3-209ENST00000558925 GSTM4Q03013 218 aa2.68□□□□□ -1.98
USP3-209ENST00000558925 MRPL58Q14197 206 aaKnown RBP2.68□□□□□ -1.98
USP3-209ENST00000558925 ENOX2Q16206 610 aaKnown RBP2.68□□□□□ -1.98
USP3-209ENST00000558925 C8orf34Q49A92 452 aa2.68□□□□□ -1.98
USP3-209ENST00000558925 AKAP4Q5JQC9 854 aa2.68□□□□□ -1.98
USP3-209ENST00000558925 C9orf131Q5VYM1 1079 aa2.68□□□□□ -1.98
USP3-209ENST00000558925 PI16Q6UXB8 463 aa2.68□□□□□ -1.98
USP3-209ENST00000558925 RELTQ969Z4 430 aa2.68□□□□□ -1.98
USP3-209ENST00000558925 DMRTB1Q96MA1 342 aa2.68□□□□□ -1.98
USP3-209ENST00000558925 OSMRQ99650 979 aa2.68□□□□□ -1.98
USP3-209ENST00000558925 BACH2Q9BYV9 841 aa2.68□□□□□ -1.98
USP3-209ENST00000558925 PARP2Q9UGN5 583 aa2.68□□□□□ -1.98
USP3-209ENST00000558925 FOXD3Q9UJU5 478 aaPredicted RBP2.68□□□□□ -1.98
USP3-209ENST00000558925 PPP1R9AQ9ULJ8 1098 aa2.68□□□□□ -1.98
USP3-209ENST00000558925 EIF1AYO14602 144 aaKnown RBP2.67□□□□□ -1.98
USP3-209ENST00000558925 FOXD2O60548 495 aaPredicted RBP2.67□□□□□ -1.98
USP3-209ENST00000558925 PRPF40AO75400 957 aaKnown RBP2.67□□□□□ -1.98
USP3-209ENST00000558925 CEACAM5P06731 702 aa2.67□□□□□ -1.98
USP3-209ENST00000558925 VAMP1P23763 118 aa2.67□□□□□ -1.98
USP3-209ENST00000558925 MAOBP27338 520 aa2.67□□□□□ -1.98
USP3-209ENST00000558925 HDLBPQ00341 1268 aaKnown RBP2.67□□□□□ -1.98
USP3-209ENST00000558925 PDE3BQ13370 1112 aa2.67□□□□□ -1.98
USP3-209ENST00000558925 IFI16Q16666 785 aaKnown RBP2.67□□□□□ -1.98
USP3-209ENST00000558925 ALKBH8Q96BT7 664 aaKnown RBP2.67□□□□□ -1.98
USP3-209ENST00000558925 CITED4Q96RK1 184 aa2.67□□□□□ -1.98
USP3-209ENST00000558925 C19orf73Q9NVV2 129 aa2.67□□□□□ -1.98
USP3-209ENST00000558925 USP35Q9P2H5 1018 aa2.67□□□□□ -1.98
USP3-209ENST00000558925 AP4E1Q9UPM8 1137 aa2.67□□□□□ -1.98
USP3-209ENST00000558925 FNDC3AQ9Y2H6 1198 aaKnown RBP2.67□□□□□ -1.98
USP3-209ENST00000558925 NFIBO00712 420 aa2.66□□□□□ -1.98
USP3-209ENST00000558925 PSPNO60542 156 aa2.66□□□□□ -1.98
USP3-209ENST00000558925 POLR3DP05423 398 aaPredicted RBP2.66□□□□□ -1.98
USP3-209ENST00000558925 GLI1P08151 1106 aa2.66□□□□□ -1.98
USP3-209ENST00000558925 CTSHP09668 335 aa2.66□□□□□ -1.98
USP3-209ENST00000558925 CES1P23141 567 aa2.66□□□□□ -1.98
USP3-209ENST00000558925 DAB2P98082 770 aa2.66□□□□□ -1.98
USP3-209ENST00000558925 XPCQ01831 940 aaPredicted RBP2.66□□□□□ -1.98
USP3-209ENST00000558925 PSMD2Q13200 908 aa2.66□□□□□ -1.98
USP3-209ENST00000558925 KCNA10Q16322 511 aa2.66□□□□□ -1.98
USP3-209ENST00000558925 ZNF423Q2M1K9 1284 aa2.66□□□□□ -1.98
USP3-209ENST00000558925 CYP27C1Q4G0S4 372 aa2.66□□□□□ -1.98
USP3-209ENST00000558925 ANGEL2Q5VTE6 544 aaKnown RBP2.66□□□□□ -1.98
USP3-209ENST00000558925 PEAR1Q5VY43 1037 aaPredicted RBP2.66□□□□□ -1.98
USP3-209ENST00000558925 PDE12Q6L8Q7 609 aaKnown RBP2.66□□□□□ -1.98
USP3-209ENST00000558925 ATG14Q6ZNE5 492 aa2.66□□□□□ -1.98
USP3-209ENST00000558925 TMC4Q7Z404 712 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms