RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 PHLDB3Q6NSJ2 640 aa3.94□□□□□ -1.78
SLIRP-208ENST00000556956 MPZL3Q6UWV2 235 aa3.94□□□□□ -1.78
SLIRP-208ENST00000556956 PLD6Q8N2A8 252 aaKnown RBP3.94□□□□□ -1.78
SLIRP-208ENST00000556956 POP1Q99575 1024 aaKnown RBP3.94□□□□□ -1.78
SLIRP-208ENST00000556956 OSGEPQ9NPF4 335 aa3.94□□□□□ -1.78
SLIRP-208ENST00000556956 DZANK1Q9NVP4 752 aa3.94□□□□□ -1.78
SLIRP-208ENST00000556956 CNTN3Q9P232 1028 aa3.94□□□□□ -1.78
SLIRP-208ENST00000556956 SMG5Q9UPR3 1016 aaKnown RBP3.94□□□□□ -1.78
SLIRP-208ENST00000556956 KIF21BO75037 1637 aa3.94□□□□□ -1.78
SLIRP-208ENST00000556956 HMGXB3Q12766 1538 aa3.94□□□□□ -1.78
SLIRP-208ENST00000556956 CUX2O14529 1486 aa3.93□□□□□ -1.78
SLIRP-208ENST00000556956 H3BRJ5 948 aa3.93□□□□□ -1.78
SLIRP-208ENST00000556956 CYP2E1P05181 493 aaPredicted RBP3.93□□□□□ -1.78
SLIRP-208ENST00000556956 USP11P51784 963 aa3.93□□□□□ -1.78
SLIRP-208ENST00000556956 DDX10Q13206 875 aaKnown RBP3.93□□□□□ -1.78
SLIRP-208ENST00000556956 MTMR3Q13615 1198 aa3.93□□□□□ -1.78
SLIRP-208ENST00000556956 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.93□□□□□ -1.78
SLIRP-208ENST00000556956 TMEM102Q8N9M5 508 aaPredicted RBP3.93□□□□□ -1.78
SLIRP-208ENST00000556956 DDX54Q8TDD1 881 aaKnown RBP3.93□□□□□ -1.78
SLIRP-208ENST00000556956 BSNDQ8WZ55 320 aa3.93□□□□□ -1.78
SLIRP-208ENST00000556956 EZH1Q92800 747 aaPredicted RBP3.93□□□□□ -1.78
SLIRP-208ENST00000556956 DIRC2Q96SL1 478 aa3.93□□□□□ -1.78
SLIRP-208ENST00000556956 OSMRQ99650 979 aa3.93□□□□□ -1.78
SLIRP-208ENST00000556956 ZFYVE1Q9HBF4 777 aa3.93□□□□□ -1.78
SLIRP-208ENST00000556956 KANSL3Q9P2N6 904 aa3.93□□□□□ -1.78
SLIRP-208ENST00000556956 AMOTL2Q9Y2J4 779 aa3.93□□□□□ -1.78
SLIRP-208ENST00000556956 RRBP1Q9P2E9 1410 aaKnown RBP3.93□□□□□ -1.78
SLIRP-208ENST00000556956 FZD6O60353 706 aa3.92□□□□□ -1.78
SLIRP-208ENST00000556956 CELA3BP08861 270 aa3.92□□□□□ -1.78
SLIRP-208ENST00000556956 MED14OSP0DP75 135 aa3.92□□□□□ -1.78
SLIRP-208ENST00000556956 CYP27A1Q02318 531 aa3.92□□□□□ -1.78
SLIRP-208ENST00000556956 GJD3Q8N144 294 aa3.92□□□□□ -1.78
SLIRP-208ENST00000556956 TMC1Q8TDI8 760 aa3.92□□□□□ -1.78
SLIRP-208ENST00000556956 NXPE3Q969Y0 559 aa3.92□□□□□ -1.78
SLIRP-208ENST00000556956 TMPRSS13Q9BYE2 586 aa3.92□□□□□ -1.78
SLIRP-208ENST00000556956 ZFYVE28Q9HCC9 887 aa3.92□□□□□ -1.78
SLIRP-208ENST00000556956 ANO2Q9NQ90 1003 aa3.92□□□□□ -1.78
SLIRP-208ENST00000556956 PPP4R2Q9NY27 417 aa3.92□□□□□ -1.78
SLIRP-208ENST00000556956 CCNB3Q8WWL7 1395 aa3.91□□□□□ -1.78
SLIRP-208ENST00000556956 TCAF2A6NFQ2 919 aa3.91□□□□□ -1.78
SLIRP-208ENST00000556956 H3BRB1 525 aa3.91□□□□□ -1.78
SLIRP-208ENST00000556956 ETV2O00321 342 aaPredicted RBP3.91□□□□□ -1.78
SLIRP-208ENST00000556956 BRD1O95696 1058 aa3.91□□□□□ -1.78
SLIRP-208ENST00000556956 GLI1P08151 1106 aa3.91□□□□□ -1.78
SLIRP-208ENST00000556956 C19orf57Q0VDD7 668 aa3.91□□□□□ -1.78
SLIRP-208ENST00000556956 ZNF211Q13398 564 aaPredicted RBP3.91□□□□□ -1.78
SLIRP-208ENST00000556956 IKBKEQ14164 716 aa3.91□□□□□ -1.78
SLIRP-208ENST00000556956 HP1BP3Q5SSJ5 553 aaPredicted RBP3.91□□□□□ -1.78
SLIRP-208ENST00000556956 NUTM2GQ5VZR2 741 aa3.91□□□□□ -1.78
SLIRP-208ENST00000556956 SLC23A3Q6PIS1 610 aa3.91□□□□□ -1.78
SLIRP-208ENST00000556956 C2CD4AQ8NCU7 369 aaPredicted RBP3.91□□□□□ -1.78
SLIRP-208ENST00000556956 SMG8Q8ND04 991 aaKnown RBP3.91□□□□□ -1.78
SLIRP-208ENST00000556956 NSUN3Q9H649 340 aaKnown RBP3.91□□□□□ -1.78
SLIRP-208ENST00000556956 TUT1Q9H6E5 874 aaKnown RBP3.91□□□□□ -1.78
SLIRP-208ENST00000556956 CCDC87Q9NVE4 849 aa3.91□□□□□ -1.78
SLIRP-208ENST00000556956 ADAMTS20P59510 1910 aa3.9□□□□□ -1.78
SLIRP-208ENST00000556956 SETD5Q9C0A6 1442 aa3.9□□□□□ -1.78
SLIRP-208ENST00000556956 CARNS1A5YM72 827 aa3.9□□□□□ -1.79
SLIRP-208ENST00000556956 A6NHS1 94 aa3.9□□□□□ -1.79
SLIRP-208ENST00000556956 NFKBIEO00221 500 aa3.9□□□□□ -1.79
SLIRP-208ENST00000556956 EREGO14944 169 aa3.9□□□□□ -1.79
SLIRP-208ENST00000556956 DEKP35659 375 aaKnown RBP3.9□□□□□ -1.79
SLIRP-208ENST00000556956 ITGAEP38570 1179 aa3.9□□□□□ -1.79
SLIRP-208ENST00000556956 RANGAP1P46060 587 aaPredicted RBP3.9□□□□□ -1.79
SLIRP-208ENST00000556956 HNRNPUQ00839 825 aaKnown RBP eCLIP3.9□□□□□ -1.79
SLIRP-208ENST00000556956 TXNDC2Q86VQ3 553 aa3.9□□□□□ -1.79
SLIRP-208ENST00000556956 FAM181AQ8N9Y4 354 aa3.9□□□□□ -1.79
SLIRP-208ENST00000556956 RETREG2Q8NC44 543 aa3.9□□□□□ -1.79
SLIRP-208ENST00000556956 ASAP3Q8TDY4 903 aa3.9□□□□□ -1.79
SLIRP-208ENST00000556956 SLC7A3Q8WY07 619 aa3.9□□□□□ -1.79
SLIRP-208ENST00000556956 DMRTB1Q96MA1 342 aa3.9□□□□□ -1.79
SLIRP-208ENST00000556956 BHLHE41Q9C0J9 482 aaPredicted RBP3.9□□□□□ -1.79
SLIRP-208ENST00000556956 DNAJC25Q9H1X3 360 aa3.9□□□□□ -1.79
SLIRP-208ENST00000556956 CHRDQ9H2X0 955 aa3.9□□□□□ -1.79
SLIRP-208ENST00000556956 SOX17Q9H6I2 414 aaPredicted RBP3.9□□□□□ -1.79
SLIRP-208ENST00000556956 SUGCTQ9HAC7 445 aa3.9□□□□□ -1.79
SLIRP-208ENST00000556956 CTNND2Q9UQB3 1225 aa3.9□□□□□ -1.79
SLIRP-208ENST00000556956 U3KQE9 123 aa3.9□□□□□ -1.79
SLIRP-208ENST00000556956 PATL2C9JE40 543 aaKnown RBP3.89□□□□□ -1.79
SLIRP-208ENST00000556956 CPNE3O75131 537 aaKnown RBP3.89□□□□□ -1.79
SLIRP-208ENST00000556956 DLGAP3O95886 979 aa3.89□□□□□ -1.79
SLIRP-208ENST00000556956 NFICP08651 508 aa3.89□□□□□ -1.79
SLIRP-208ENST00000556956 SERPINB4P48594 390 aa3.89□□□□□ -1.79
SLIRP-208ENST00000556956 PRKCQQ04759 706 aa3.89□□□□□ -1.79
SLIRP-208ENST00000556956 HGSNATQ68CP4 663 aa3.89□□□□□ -1.79
SLIRP-208ENST00000556956 GALNT12Q8IXK2 581 aa3.89□□□□□ -1.79
SLIRP-208ENST00000556956 NETO1Q8TDF5 533 aa3.89□□□□□ -1.79
SLIRP-208ENST00000556956 ZKSCAN3Q9BRR0 538 aa3.89□□□□□ -1.79
SLIRP-208ENST00000556956 MENTQ9BUN1 341 aa3.89□□□□□ -1.79
SLIRP-208ENST00000556956 CYP4F12Q9HCS2 524 aa3.89□□□□□ -1.79
SLIRP-208ENST00000556956 FOXD3Q9UJU5 478 aaPredicted RBP3.89□□□□□ -1.79
SLIRP-208ENST00000556956 VAV3Q9UKW4 847 aa3.89□□□□□ -1.79
SLIRP-208ENST00000556956 SOX13Q9UN79 622 aa3.89□□□□□ -1.79
SLIRP-208ENST00000556956 RAPGEF2Q9Y4G8 1499 aa3.89□□□□□ -1.79
SLIRP-208ENST00000556956 RAB3GAP2Q9H2M9 1393 aa3.89□□□□□ -1.79
SLIRP-208ENST00000556956 TRIM13O60858 407 aa3.88□□□□□ -1.79
SLIRP-208ENST00000556956 CYP11A1P05108 521 aa3.88□□□□□ -1.79
SLIRP-208ENST00000556956 ARHGAP4P98171 946 aa3.88□□□□□ -1.79
SLIRP-208ENST00000556956 MARCH10Q8NA82 808 aaPredicted RBP3.88□□□□□ -1.79
SLIRP-208ENST00000556956 TRAK1Q9UPV9 953 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms