RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 OXCT1P55809 520 aa7.61□□□□□ -1.19
PRPF39-210ENST00000556718 GRM2Q14416 872 aa7.61□□□□□ -1.19
PRPF39-210ENST00000556718 IFI16Q16666 785 aaKnown RBP7.61□□□□□ -1.19
PRPF39-210ENST00000556718 AOC3Q16853 763 aa7.61□□□□□ -1.19
PRPF39-210ENST00000556718 PI4K2BQ8TCG2 481 aa7.61□□□□□ -1.19
PRPF39-210ENST00000556718 STK35Q8TDR2 534 aa7.61□□□□□ -1.19
PRPF39-210ENST00000556718 DUSP23Q9BVJ7 150 aa7.61□□□□□ -1.19
PRPF39-210ENST00000556718 DBX1A6NMT0 343 aa7.6□□□□□ -1.19
PRPF39-210ENST00000556718 GPR182O15218 404 aa7.6□□□□□ -1.19
PRPF39-210ENST00000556718 NDUFB5O43674 189 aa7.6□□□□□ -1.19
PRPF39-210ENST00000556718 FARP2O94887 1054 aaPredicted RBP7.6□□□□□ -1.19
PRPF39-210ENST00000556718 SPOCD1Q6ZMY3 1216 aa7.6□□□□□ -1.19
PRPF39-210ENST00000556718 PDZD3Q86UT5 571 aa7.6□□□□□ -1.19
PRPF39-210ENST00000556718 EPS8L3Q8TE67 593 aaKnown RBP7.6□□□□□ -1.19
PRPF39-210ENST00000556718 NIF3L1Q9GZT8 377 aa7.6□□□□□ -1.19
PRPF39-210ENST00000556718 CEACAM5P06731 702 aa7.59□□□□□ -1.19
PRPF39-210ENST00000556718 TOP6BLQ8N6T0 577 aa7.59□□□□□ -1.19
PRPF39-210ENST00000556718 PRDM7Q9NQW5 492 aa7.59□□□□□ -1.19
PRPF39-210ENST00000556718 KRT82Q9NSB4 513 aa7.59□□□□□ -1.19
PRPF39-210ENST00000556718 CCDC9Q9Y3X0 531 aaKnown RBP7.59□□□□□ -1.19
PRPF39-210ENST00000556718 ITIH2P19823 946 aa7.58□□□□□ -1.2
PRPF39-210ENST00000556718 PDE3BQ13370 1112 aa7.58□□□□□ -1.2
PRPF39-210ENST00000556718 TMEM40Q8WWA1 233 aa7.58□□□□□ -1.2
PRPF39-210ENST00000556718 KCNB2Q92953 911 aa7.58□□□□□ -1.2
PRPF39-210ENST00000556718 ISL2Q96A47 359 aa7.58□□□□□ -1.2
PRPF39-210ENST00000556718 HRASLS5Q96KN8 279 aa7.58□□□□□ -1.2
PRPF39-210ENST00000556718 PCOLCE2Q9UKZ9 415 aa7.58□□□□□ -1.2
PRPF39-210ENST00000556718 PI16Q6UXB8 463 aa7.57□□□□□ -1.2
PRPF39-210ENST00000556718 ARHGAP27Q6ZUM4 889 aa7.57□□□□□ -1.2
PRPF39-210ENST00000556718 RETREG2Q8NC44 543 aa7.57□□□□□ -1.2
PRPF39-210ENST00000556718 HEXIM2Q96MH2 286 aaKnown RBP7.57□□□□□ -1.2
PRPF39-210ENST00000556718 DNAJC25Q9H1X3 360 aa7.57□□□□□ -1.2
PRPF39-210ENST00000556718 MKNK2Q9HBH9 465 aa7.57□□□□□ -1.2
PRPF39-210ENST00000556718 GPN3Q9UHW5 284 aaPredicted RBP7.57□□□□□ -1.2
PRPF39-210ENST00000556718 TRAK1Q9UPV9 953 aa7.57□□□□□ -1.2
PRPF39-210ENST00000556718 FCGRTP55899 365 aa7.56□□□□□ -1.2
PRPF39-210ENST00000556718 FBLN7Q53RD9 439 aa7.56□□□□□ -1.2
PRPF39-210ENST00000556718 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.56□□□□□ -1.2
PRPF39-210ENST00000556718 TMEM265A0A087WTH1 108 aa7.55□□□□□ -1.2
PRPF39-210ENST00000556718 MESP2Q0VG99 397 aa7.55□□□□□ -1.2
PRPF39-210ENST00000556718 ANGEL2Q5VTE6 544 aaKnown RBP7.55□□□□□ -1.2
PRPF39-210ENST00000556718 DTHD1Q6ZMT9 781 aa7.55□□□□□ -1.2
PRPF39-210ENST00000556718 FAM214BQ7L5A3 538 aa7.55□□□□□ -1.2
PRPF39-210ENST00000556718 AEBP1Q8IUX7 1158 aa7.55□□□□□ -1.2
PRPF39-210ENST00000556718 KSR1Q8IVT5 923 aa7.55□□□□□ -1.2
PRPF39-210ENST00000556718 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.55□□□□□ -1.2
PRPF39-210ENST00000556718 CSRNP1Q96S65 589 aa7.55□□□□□ -1.2
PRPF39-210ENST00000556718 TNKS2Q9H2K2 1166 aa7.55□□□□□ -1.2
PRPF39-210ENST00000556718 TMEM39AQ9NV64 488 aa7.55□□□□□ -1.2
PRPF39-210ENST00000556718 ZC3H12AQ5D1E8 599 aaKnown RBP7.54□□□□□ -1.2
PRPF39-210ENST00000556718 MPRIPQ6WCQ1 1025 aa7.54□□□□□ -1.2
PRPF39-210ENST00000556718 SULF2Q8IWU5 870 aa7.54□□□□□ -1.2
PRPF39-210ENST00000556718 TMC1Q8TDI8 760 aa7.54□□□□□ -1.2
PRPF39-210ENST00000556718 CITED4Q96RK1 184 aa7.54□□□□□ -1.2
PRPF39-210ENST00000556718 SSU72Q9NP77 194 aaKnown RBP7.54□□□□□ -1.2
PRPF39-210ENST00000556718 PATL2C9JE40 543 aaKnown RBP7.53□□□□□ -1.2
PRPF39-210ENST00000556718 PPP2R3AQ06190 1150 aa7.53□□□□□ -1.2
PRPF39-210ENST00000556718 PKN1Q16512 942 aa7.53□□□□□ -1.2
PRPF39-210ENST00000556718 SLC23A3Q6PIS1 610 aa7.53□□□□□ -1.2
PRPF39-210ENST00000556718 UBE3DQ7Z6J8 389 aa7.53□□□□□ -1.2
PRPF39-210ENST00000556718 RNF214Q8ND24 703 aa7.53□□□□□ -1.2
PRPF39-210ENST00000556718 ZNF503-AS2A6NEH8 195 aa7.52□□□□□ -1.21
PRPF39-210ENST00000556718 MAP1SQ66K74 1059 aaPredicted RBP7.52□□□□□ -1.21
PRPF39-210ENST00000556718 FLAD1Q8NFF5 587 aa7.52□□□□□ -1.21
PRPF39-210ENST00000556718 GPBAR1Q8TDU6 330 aa7.52□□□□□ -1.21
PRPF39-210ENST00000556718 KRTAP4-2Q9BYR5 136 aa7.52□□□□□ -1.21
PRPF39-210ENST00000556718 CSADQ9Y600 493 aa7.52□□□□□ -1.21
PRPF39-210ENST00000556718 LRRC10BA6NIK2 292 aa7.51□□□□□ -1.21
PRPF39-210ENST00000556718 ARNTP27540 789 aa7.51□□□□□ -1.21
PRPF39-210ENST00000556718 ZSWIM9Q86XI8 627 aa7.51□□□□□ -1.21
PRPF39-210ENST00000556718 CILP2Q8IUL8 1156 aa7.51□□□□□ -1.21
PRPF39-210ENST00000556718 SPACA3Q8IXA5 215 aa7.51□□□□□ -1.21
PRPF39-210ENST00000556718 BCO2Q9BYV7 579 aa7.51□□□□□ -1.21
PRPF39-210ENST00000556718 USTQ9Y2C2 406 aa7.51□□□□□ -1.21
PRPF39-210ENST00000556718 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.5□□□□□ -1.21
PRPF39-210ENST00000556718 NTF4P34130 210 aa7.5□□□□□ -1.21
PRPF39-210ENST00000556718 ERVK-24P63145 666 aa7.5□□□□□ -1.21
PRPF39-210ENST00000556718 IKZF1Q13422 519 aa7.5□□□□□ -1.21
PRPF39-210ENST00000556718 MLANAQ16655 118 aa7.5□□□□□ -1.21
PRPF39-210ENST00000556718 NKPD1Q17RQ9 610 aa7.5□□□□□ -1.21
PRPF39-210ENST00000556718 PPM1JQ5JR12 505 aa7.5□□□□□ -1.21
PRPF39-210ENST00000556718 B4GALNT3Q6L9W6 998 aa7.5□□□□□ -1.21
PRPF39-210ENST00000556718 FAM84AQ96KN4 292 aa7.5□□□□□ -1.21
PRPF39-210ENST00000556718 SLC38A3Q99624 504 aa7.5□□□□□ -1.21
PRPF39-210ENST00000556718 AKAP2Q9Y2D5 859 aa7.5□□□□□ -1.21
PRPF39-210ENST00000556718 SNX11Q9Y5W9 270 aa7.5□□□□□ -1.21
PRPF39-210ENST00000556718 KRTAP9-7A8MTY7 169 aa7.49□□□□□ -1.21
PRPF39-210ENST00000556718 HNRNPUQ00839 825 aaKnown RBP eCLIP7.49□□□□□ -1.21
PRPF39-210ENST00000556718 ZP2Q05996 745 aa7.49□□□□□ -1.21
PRPF39-210ENST00000556718 ZNF252P-AS1Q0IIN9 211 aa7.49□□□□□ -1.21
PRPF39-210ENST00000556718 FYB2Q5VWT5 728 aa7.49□□□□□ -1.21
PRPF39-210ENST00000556718 NPM2Q86SE8 214 aaKnown RBP7.49□□□□□ -1.21
PRPF39-210ENST00000556718 TXNDC2Q86VQ3 553 aa7.49□□□□□ -1.21
PRPF39-210ENST00000556718 ALKBH8Q96BT7 664 aaKnown RBP7.49□□□□□ -1.21
PRPF39-210ENST00000556718 LIN37Q96GY3 246 aaPredicted RBP7.49□□□□□ -1.21
PRPF39-210ENST00000556718 NME2P22392 152 aa7.48□□□□□ -1.21
PRPF39-210ENST00000556718 KCNMB1Q16558 191 aa7.48□□□□□ -1.21
PRPF39-210ENST00000556718 GRIN3AQ8TCU5 1115 aa7.48□□□□□ -1.21
PRPF39-210ENST00000556718 ASB11Q8WXH4 323 aa7.48□□□□□ -1.21
PRPF39-210ENST00000556718 DMRTB1Q96MA1 342 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms