RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 NEFMP07197 916 aa7.63□□□□□ -1.19
SCFD1-216ENST00000555550 SERPINB4P48594 390 aa7.63□□□□□ -1.19
SCFD1-216ENST00000555550 MESP2Q0VG99 397 aa7.63□□□□□ -1.19
SCFD1-216ENST00000555550 RPS26P11Q5JNZ5 115 aaPredicted RBP7.63□□□□□ -1.19
SCFD1-216ENST00000555550 GLYCTKQ8IVS8 523 aa7.63□□□□□ -1.19
SCFD1-216ENST00000555550 TOP6BLQ8N6T0 577 aa7.63□□□□□ -1.19
SCFD1-216ENST00000555550 SLC38A3Q99624 504 aa7.63□□□□□ -1.19
SCFD1-216ENST00000555550 KRTAP4-2Q9BYR5 136 aa7.63□□□□□ -1.19
SCFD1-216ENST00000555550 NIF3L1Q9GZT8 377 aa7.63□□□□□ -1.19
SCFD1-216ENST00000555550 C1orf115Q9H7X2 142 aa7.63□□□□□ -1.19
SCFD1-216ENST00000555550 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.63□□□□□ -1.19
SCFD1-216ENST00000555550 ARHGAP4P98171 946 aa7.62□□□□□ -1.19
SCFD1-216ENST00000555550 PRPF40BQ6NWY9 871 aaKnown RBP7.62□□□□□ -1.19
SCFD1-216ENST00000555550 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.62□□□□□ -1.19
SCFD1-216ENST00000555550 EPS8L3Q8TE67 593 aaKnown RBP7.62□□□□□ -1.19
SCFD1-216ENST00000555550 ISL2Q96A47 359 aa7.62□□□□□ -1.19
SCFD1-216ENST00000555550 HEXIM2Q96MH2 286 aaKnown RBP7.62□□□□□ -1.19
SCFD1-216ENST00000555550 MKNK2Q9HBH9 465 aa7.62□□□□□ -1.19
SCFD1-216ENST00000555550 LRRC10BA6NIK2 292 aa7.61□□□□□ -1.19
SCFD1-216ENST00000555550 NDUFB5O43674 189 aa7.61□□□□□ -1.19
SCFD1-216ENST00000555550 PDE3BQ13370 1112 aa7.61□□□□□ -1.19
SCFD1-216ENST00000555550 GRM2Q14416 872 aa7.61□□□□□ -1.19
SCFD1-216ENST00000555550 ANGEL2Q5VTE6 544 aaKnown RBP7.61□□□□□ -1.19
SCFD1-216ENST00000555550 SLC23A3Q6PIS1 610 aa7.61□□□□□ -1.19
SCFD1-216ENST00000555550 PDZD3Q86UT5 571 aa7.61□□□□□ -1.19
SCFD1-216ENST00000555550 STK35Q8TDR2 534 aa7.61□□□□□ -1.19
SCFD1-216ENST00000555550 FAM84AQ96KN4 292 aa7.61□□□□□ -1.19
SCFD1-216ENST00000555550 FAM129BQ96TA1 746 aa7.61□□□□□ -1.19
SCFD1-216ENST00000555550 KRT82Q9NSB4 513 aa7.61□□□□□ -1.19
SCFD1-216ENST00000555550 EGFL7Q9UHF1 273 aa7.61□□□□□ -1.19
SCFD1-216ENST00000555550 GPN3Q9UHW5 284 aaPredicted RBP7.61□□□□□ -1.19
SCFD1-216ENST00000555550 ZNF503-AS2A6NEH8 195 aa7.6□□□□□ -1.19
SCFD1-216ENST00000555550 FCGRTP55899 365 aa7.6□□□□□ -1.19
SCFD1-216ENST00000555550 MLANAQ16655 118 aa7.6□□□□□ -1.19
SCFD1-216ENST00000555550 DTHD1Q6ZMT9 781 aa7.6□□□□□ -1.19
SCFD1-216ENST00000555550 TMC1Q8TDI8 760 aa7.6□□□□□ -1.19
SCFD1-216ENST00000555550 ARID3AQ99856 593 aa7.6□□□□□ -1.19
SCFD1-216ENST00000555550 SUPT5HO00267 1087 aaKnown RBP7.59□□□□□ -1.19
SCFD1-216ENST00000555550 FAM214BQ7L5A3 538 aa7.59□□□□□ -1.19
SCFD1-216ENST00000555550 ZSWIM9Q86XI8 627 aa7.59□□□□□ -1.19
SCFD1-216ENST00000555550 TMEM39AQ9NV64 488 aa7.59□□□□□ -1.19
SCFD1-216ENST00000555550 GPR182O15218 404 aa7.58□□□□□ -1.2
SCFD1-216ENST00000555550 ZC3H12AQ5D1E8 599 aaKnown RBP7.58□□□□□ -1.2
SCFD1-216ENST00000555550 DNAJC25Q9H1X3 360 aa7.58□□□□□ -1.2
SCFD1-216ENST00000555550 TNKS2Q9H2K2 1166 aa7.58□□□□□ -1.2
SCFD1-216ENST00000555550 TRAK1Q9UPV9 953 aa7.58□□□□□ -1.2
SCFD1-216ENST00000555550 SNX11Q9Y5W9 270 aa7.58□□□□□ -1.2
SCFD1-216ENST00000555550 CSADQ9Y600 493 aa7.58□□□□□ -1.2
SCFD1-216ENST00000555550 IGHA2P01877 340 aa7.57□□□□□ -1.2
SCFD1-216ENST00000555550 ZP2Q05996 745 aa7.57□□□□□ -1.2
SCFD1-216ENST00000555550 PPP2R3AQ06190 1150 aa7.57□□□□□ -1.2
SCFD1-216ENST00000555550 IKZF1Q13422 519 aa7.57□□□□□ -1.2
SCFD1-216ENST00000555550 KCNMB1Q16558 191 aa7.57□□□□□ -1.2
SCFD1-216ENST00000555550 FYB2Q5VWT5 728 aa7.57□□□□□ -1.2
SCFD1-216ENST00000555550 MAP1SQ66K74 1059 aaPredicted RBP7.57□□□□□ -1.2
SCFD1-216ENST00000555550 PI16Q6UXB8 463 aa7.57□□□□□ -1.2
SCFD1-216ENST00000555550 MPRIPQ6WCQ1 1025 aa7.57□□□□□ -1.2
SCFD1-216ENST00000555550 RNF214Q8ND24 703 aa7.57□□□□□ -1.2
SCFD1-216ENST00000555550 FLAD1Q8NFF5 587 aa7.57□□□□□ -1.2
SCFD1-216ENST00000555550 LIN37Q96GY3 246 aaPredicted RBP7.57□□□□□ -1.2
SCFD1-216ENST00000555550 KRTAP9-7A8MTY7 169 aa7.56□□□□□ -1.2
SCFD1-216ENST00000555550 ARNTP27540 789 aa7.56□□□□□ -1.2
SCFD1-216ENST00000555550 SULF2Q8IWU5 870 aa7.56□□□□□ -1.2
SCFD1-216ENST00000555550 TIMELESSQ9UNS1 1208 aa7.56□□□□□ -1.2
SCFD1-216ENST00000555550 ZNF865P0CJ78 1059 aaPredicted RBP7.55□□□□□ -1.2
SCFD1-216ENST00000555550 ERVK-24P63145 666 aa7.55□□□□□ -1.2
SCFD1-216ENST00000555550 NKPD1Q17RQ9 610 aa7.55□□□□□ -1.2
SCFD1-216ENST00000555550 PPM1JQ5JR12 505 aa7.55□□□□□ -1.2
SCFD1-216ENST00000555550 UBE3DQ7Z6J8 389 aa7.55□□□□□ -1.2
SCFD1-216ENST00000555550 CILP2Q8IUL8 1156 aa7.55□□□□□ -1.2
SCFD1-216ENST00000555550 SPACA3Q8IXA5 215 aa7.55□□□□□ -1.2
SCFD1-216ENST00000555550 GPBAR1Q8TDU6 330 aa7.55□□□□□ -1.2
SCFD1-216ENST00000555550 ASB11Q8WXH4 323 aa7.55□□□□□ -1.2
SCFD1-216ENST00000555550 CSRNP1Q96S65 589 aa7.55□□□□□ -1.2
SCFD1-216ENST00000555550 FAM53CQ9NYF3 392 aa7.55□□□□□ -1.2
SCFD1-216ENST00000555550 CTNND2Q9UQB3 1225 aa7.55□□□□□ -1.2
SCFD1-216ENST00000555550 AKAP2Q9Y2D5 859 aa7.55□□□□□ -1.2
SCFD1-216ENST00000555550 RAP1GAPP47736 663 aa7.54□□□□□ -1.2
SCFD1-216ENST00000555550 HNRNPUQ00839 825 aaKnown RBP eCLIP7.54□□□□□ -1.2
SCFD1-216ENST00000555550 CITED4Q96RK1 184 aa7.54□□□□□ -1.2
SCFD1-216ENST00000555550 CBX8Q9HC52 389 aa7.54□□□□□ -1.2
SCFD1-216ENST00000555550 PPP4R2Q9NY27 417 aa7.54□□□□□ -1.2
SCFD1-216ENST00000555550 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.53□□□□□ -1.2
SCFD1-216ENST00000555550 CFPP27918 469 aa7.53□□□□□ -1.2
SCFD1-216ENST00000555550 ACSBG1Q96GR2 724 aa7.53□□□□□ -1.2
SCFD1-216ENST00000555550 BCO2Q9BYV7 579 aa7.53□□□□□ -1.2
SCFD1-216ENST00000555550 PRDM10Q9NQV6 1147 aa7.53□□□□□ -1.2
SCFD1-216ENST00000555550 GTF2IRD1Q9UHL9 959 aa7.53□□□□□ -1.2
SCFD1-216ENST00000555550 DCDC2CA8MYV0 355 aa7.52□□□□□ -1.21
SCFD1-216ENST00000555550 PRR23BQ6ZRT6 265 aa7.52□□□□□ -1.21
SCFD1-216ENST00000555550 C12orf40Q86WS4 652 aa7.52□□□□□ -1.21
SCFD1-216ENST00000555550 NLRP2Q9NX02 1062 aa7.52□□□□□ -1.21
SCFD1-216ENST00000555550 IGF2BP3O00425 579 aaKnown RBP eCLIP7.51□□□□□ -1.21
SCFD1-216ENST00000555550 NME2P22392 152 aa7.51□□□□□ -1.21
SCFD1-216ENST00000555550 ZNF252P-AS1Q0IIN9 211 aa7.51□□□□□ -1.21
SCFD1-216ENST00000555550 BHLHE22Q8NFJ8 381 aaPredicted RBP7.51□□□□□ -1.21
SCFD1-216ENST00000555550 GRIN3AQ8TCU5 1115 aa7.51□□□□□ -1.21
SCFD1-216ENST00000555550 EOMESO95936 686 aa7.5□□□□□ -1.21
SCFD1-216ENST00000555550 NTF4P34130 210 aa7.5□□□□□ -1.21
SCFD1-216ENST00000555550 AFMP43652 599 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms