RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 MKNK2Q9HBH9 465 aa9.71□□□□□ -0.86
VRK1-203ENST00000555067 CD96P40200 585 aa9.7□□□□□ -0.86
VRK1-203ENST00000555067 PI4K2BQ8TCG2 481 aa9.7□□□□□ -0.86
VRK1-203ENST00000555067 CRIM1Q9NZV1 1036 aa9.7□□□□□ -0.86
VRK1-203ENST00000555067 TMEM238LA0A1B0GVL6 79 aa9.69□□□□□ -0.86
VRK1-203ENST00000555067 BRD1O95696 1058 aa9.69□□□□□ -0.86
VRK1-203ENST00000555067 FAM84AQ96KN4 292 aa9.69□□□□□ -0.86
VRK1-203ENST00000555067 SLC38A3Q99624 504 aa9.69□□□□□ -0.86
VRK1-203ENST00000555067 DCTN4Q9UJW0 460 aa9.69□□□□□ -0.86
VRK1-203ENST00000555067 PDE3AQ14432 1141 aa9.68□□□□□ -0.86
VRK1-203ENST00000555067 IFI16Q16666 785 aaKnown RBP9.68□□□□□ -0.86
VRK1-203ENST00000555067 KRTAP4-5Q9BYR2 181 aa9.68□□□□□ -0.86
VRK1-203ENST00000555067 OXCT1P55809 520 aa9.67□□□□□ -0.86
VRK1-203ENST00000555067 HNRNPUQ00839 825 aaKnown RBP eCLIP9.67□□□□□ -0.86
VRK1-203ENST00000555067 GRM2Q14416 872 aa9.67□□□□□ -0.86
VRK1-203ENST00000555067 FLAD1Q8NFF5 587 aa9.67□□□□□ -0.86
VRK1-203ENST00000555067 FANCD2OSQ96PS1 177 aa9.67□□□□□ -0.86
VRK1-203ENST00000555067 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.67□□□□□ -0.86
VRK1-203ENST00000555067 BIN2Q9UBW5 565 aaPredicted RBP9.67□□□□□ -0.86
VRK1-203ENST00000555067 AOC3Q16853 763 aa9.66□□□□□ -0.86
VRK1-203ENST00000555067 TMC7Q7Z402 723 aa9.66□□□□□ -0.86
VRK1-203ENST00000555067 WDR89Q96FK6 387 aaPredicted RBP9.66□□□□□ -0.86
VRK1-203ENST00000555067 NLRP2Q9NX02 1062 aa9.66□□□□□ -0.86
VRK1-203ENST00000555067 PLAGL2Q9UPG8 496 aa9.66□□□□□ -0.86
VRK1-203ENST00000555067 PCDHGC5Q9Y5F6 944 aa9.66□□□□□ -0.86
VRK1-203ENST00000555067 CEACAM5P06731 702 aa9.65□□□□□ -0.86
VRK1-203ENST00000555067 SLC23A3Q6PIS1 610 aa9.65□□□□□ -0.86
VRK1-203ENST00000555067 EPS8L3Q8TE67 593 aaKnown RBP9.65□□□□□ -0.86
VRK1-203ENST00000555067 HRASLS5Q96KN8 279 aa9.65□□□□□ -0.86
VRK1-203ENST00000555067 ATXN3LQ9H3M9 355 aa9.65□□□□□ -0.86
VRK1-203ENST00000555067 PPP4R2Q9NY27 417 aa9.65□□□□□ -0.86
VRK1-203ENST00000555067 XRCC5P13010 732 aaKnown RBP9.64□□□□□ -0.87
VRK1-203ENST00000555067 LIG1P18858 919 aa9.64□□□□□ -0.87
VRK1-203ENST00000555067 SMYD4Q8IYR2 804 aaPredicted RBP9.64□□□□□ -0.87
VRK1-203ENST00000555067 CCDC86Q9H6F5 360 aaKnown RBP9.64□□□□□ -0.87
VRK1-203ENST00000555067 DISC1Q9NRI5 854 aa9.64□□□□□ -0.87
VRK1-203ENST00000555067 TMEM265A0A087WTH1 108 aa9.63□□□□□ -0.87
VRK1-203ENST00000555067 LEFTY1O75610 366 aa9.63□□□□□ -0.87
VRK1-203ENST00000555067 ID3Q02535 119 aa9.63□□□□□ -0.87
VRK1-203ENST00000555067 ANGEL2Q5VTE6 544 aaKnown RBP9.63□□□□□ -0.87
VRK1-203ENST00000555067 DTHD1Q6ZMT9 781 aa9.63□□□□□ -0.87
VRK1-203ENST00000555067 DUSP23Q9BVJ7 150 aa9.63□□□□□ -0.87
VRK1-203ENST00000555067 TNKS2Q9H2K2 1166 aa9.63□□□□□ -0.87
VRK1-203ENST00000555067 PIDD1Q9HB75 910 aa9.63□□□□□ -0.87
VRK1-203ENST00000555067 ZNF503-AS2A6NEH8 195 aa9.62□□□□□ -0.87
VRK1-203ENST00000555067 ZNF862O60290 1169 aa9.62□□□□□ -0.87
VRK1-203ENST00000555067 FAAP100Q0VG06 881 aa9.62□□□□□ -0.87
VRK1-203ENST00000555067 KIF4BQ2VIQ3 1234 aa9.62□□□□□ -0.87
VRK1-203ENST00000555067 ZSWIM9Q86XI8 627 aa9.62□□□□□ -0.87
VRK1-203ENST00000555067 FAM53CQ9NYF3 392 aa9.62□□□□□ -0.87
VRK1-203ENST00000555067 LRRC10BA6NIK2 292 aa9.61□□□□□ -0.87
VRK1-203ENST00000555067 MAPK1P28482 360 aa9.61□□□□□ -0.87
VRK1-203ENST00000555067 FCGRTP55899 365 aa9.61□□□□□ -0.87
VRK1-203ENST00000555067 PPP2R3AQ06190 1150 aa9.61□□□□□ -0.87
VRK1-203ENST00000555067 LCE5AQ5TCM9 118 aa9.61□□□□□ -0.87
VRK1-203ENST00000555067 C1QL4Q86Z23 238 aa9.61□□□□□ -0.87
VRK1-203ENST00000555067 KRT82Q9NSB4 513 aa9.61□□□□□ -0.87
VRK1-203ENST00000555067 GPN3Q9UHW5 284 aaPredicted RBP9.61□□□□□ -0.87
VRK1-203ENST00000555067 TREHO43280 583 aa9.6□□□□□ -0.87
VRK1-203ENST00000555067 SLFN14P0C7P3 912 aa9.6□□□□□ -0.87
VRK1-203ENST00000555067 DSC3Q14574 896 aa9.6□□□□□ -0.87
VRK1-203ENST00000555067 BCO2Q9BYV7 579 aa9.6□□□□□ -0.87
VRK1-203ENST00000555067 TMEM39AQ9NV64 488 aa9.6□□□□□ -0.87
VRK1-203ENST00000555067 SNX11Q9Y5W9 270 aa9.6□□□□□ -0.87
VRK1-203ENST00000555067 PNMA6FA0A0J9YX94 578 aa9.59□□□□□ -0.87
VRK1-203ENST00000555067 GSTP1P09211 210 aaKnown RBP9.59□□□□□ -0.87
VRK1-203ENST00000555067 CFPP27918 469 aa9.59□□□□□ -0.87
VRK1-203ENST00000555067 ZNF157P51786 506 aaPredicted RBP9.59□□□□□ -0.87
VRK1-203ENST00000555067 TTLL4Q14679 1199 aa9.59□□□□□ -0.87
VRK1-203ENST00000555067 ENOX2Q16206 610 aaKnown RBP9.59□□□□□ -0.87
VRK1-203ENST00000555067 PI16Q6UXB8 463 aa9.59□□□□□ -0.87
VRK1-203ENST00000555067 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.58□□□□□ -0.88
VRK1-203ENST00000555067 TSPAN15O95858 294 aa9.58□□□□□ -0.88
VRK1-203ENST00000555067 ZNF865P0CJ78 1059 aaPredicted RBP9.58□□□□□ -0.88
VRK1-203ENST00000555067 PLCB3Q01970 1234 aa9.58□□□□□ -0.88
VRK1-203ENST00000555067 TOX2Q96NM4 488 aa9.58□□□□□ -0.88
VRK1-203ENST00000555067 PCOLCE2Q9UKZ9 415 aa9.58□□□□□ -0.88
VRK1-203ENST00000555067 RAP1GAPP47736 663 aa9.56□□□□□ -0.88
VRK1-203ENST00000555067 MLANAQ16655 118 aa9.56□□□□□ -0.88
VRK1-203ENST00000555067 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.56□□□□□ -0.88
VRK1-203ENST00000555067 LCNL1Q6ZST4 164 aa9.56□□□□□ -0.88
VRK1-203ENST00000555067 ARHGAP27Q6ZUM4 889 aa9.56□□□□□ -0.88
VRK1-203ENST00000555067 FAM214BQ7L5A3 538 aa9.56□□□□□ -0.88
VRK1-203ENST00000555067 FBF1Q8TES7 1133 aa9.56□□□□□ -0.88
VRK1-203ENST00000555067 HEXIM2Q96MH2 286 aaKnown RBP9.56□□□□□ -0.88
VRK1-203ENST00000555067 ZC3H12CQ9C0D7 883 aaKnown RBP9.56□□□□□ -0.88
VRK1-203ENST00000555067 PRDM7Q9NQW5 492 aa9.56□□□□□ -0.88
VRK1-203ENST00000555067 NEFMP07197 916 aa9.55□□□□□ -0.88
VRK1-203ENST00000555067 HCLS1P14317 486 aaPredicted RBP9.55□□□□□ -0.88
VRK1-203ENST00000555067 KCNMB1Q16558 191 aa9.55□□□□□ -0.88
VRK1-203ENST00000555067 ZSCAN29Q8IWY8 852 aaPredicted RBP9.55□□□□□ -0.88
VRK1-203ENST00000555067 SRCIN1Q9C0H9 1055 aa9.55□□□□□ -0.88
VRK1-203ENST00000555067 RNGTTO60942 597 aaKnown RBP9.54□□□□□ -0.88
VRK1-203ENST00000555067 NXPE4Q6UWF7 544 aa9.54□□□□□ -0.88
VRK1-203ENST00000555067 PDZD3Q86UT5 571 aa9.54□□□□□ -0.88
VRK1-203ENST00000555067 SULF2Q8IWU5 870 aa9.54□□□□□ -0.88
VRK1-203ENST00000555067 CTNND2Q9UQB3 1225 aa9.54□□□□□ -0.88
VRK1-203ENST00000555067 KCNA1Q09470 495 aa9.53□□□□□ -0.88
VRK1-203ENST00000555067 SIAH1Q8IUQ4 282 aa9.53□□□□□ -0.88
VRK1-203ENST00000555067 TOP6BLQ8N6T0 577 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms