RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 PAIP2Q9BPZ3 127 aaKnown RBP12.94□□□□□ -0.34
SYNE2-208ENST00000553289 ATP7AQ04656 1500 aa12.94□□□□□ -0.34
SYNE2-208ENST00000553289 CALUO43852 315 aaPredicted RBP12.93□□□□□ -0.34
SYNE2-208ENST00000553289 DKC1O60832 514 aaKnown RBP eCLIP12.93□□□□□ -0.34
SYNE2-208ENST00000553289 ZNF75DP51815 510 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 EVCP57679 992 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 FANCCQ00597 558 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 SELENOSQ9BQE4 189 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 MROH5Q6ZUA9 1318 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 CPA1P15085 419 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 PAK1Q13153 545 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 PPP1R7Q15435 360 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 TTC38Q5R3I4 469 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 TMTC1Q8IUR5 882 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.93□□□□□ -0.34
SYNE2-208ENST00000553289 ZHX1Q9UKY1 873 aaPredicted RBP12.93□□□□□ -0.34
SYNE2-208ENST00000553289 TMEM110-MUSTN1A8MSY1 372 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 RHOXF2BP0C7M4 288 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 CCT6AP40227 531 aaKnown RBP12.93□□□□□ -0.34
SYNE2-208ENST00000553289 TERF1P54274 439 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 MXRA7P84157 204 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 CLUL1Q15846 466 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 CROCCP2Q86T23 111 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 OTUD6BQ8N6M0 293 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 OTUD7AQ8TE49 926 aaPredicted RBP12.93□□□□□ -0.34
SYNE2-208ENST00000553289 FAM89AQ96GI7 184 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 RHOXF2Q9BQY4 288 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 ALDH3A1P30838 453 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 GCKRQ14397 625 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 CCDC14Q49A88 953 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 ZKSCAN3Q9BRR0 538 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 VEZTQ9HBM0 779 aa12.93□□□□□ -0.34
SYNE2-208ENST00000553289 CPLX4Q7Z7G2 160 aa12.92□□□□□ -0.34
SYNE2-208ENST00000553289 SAMD15Q9P1V8 674 aa12.92□□□□□ -0.34
SYNE2-208ENST00000553289 PTPRTO14522 1441 aa12.92□□□□□ -0.34
SYNE2-208ENST00000553289 ARHGAP6O43182 974 aa12.92□□□□□ -0.34
SYNE2-208ENST00000553289 ZBTB16Q05516 673 aa12.92□□□□□ -0.34
SYNE2-208ENST00000553289 RAPGEF1Q13905 1077 aa12.92□□□□□ -0.34
SYNE2-208ENST00000553289 TRAPPC3LQ5T215 181 aa12.92□□□□□ -0.34
SYNE2-208ENST00000553289 IFT81Q8WYA0 676 aa12.92□□□□□ -0.34
SYNE2-208ENST00000553289 JDP2Q8WYK2 163 aa12.92□□□□□ -0.34
SYNE2-208ENST00000553289 PPP1R9BQ96SB3 815 aa12.92□□□□□ -0.34
SYNE2-208ENST00000553289 CETN3O15182 167 aa12.92□□□□□ -0.34
SYNE2-208ENST00000553289 ATP2C2O75185 946 aa12.92□□□□□ -0.34
SYNE2-208ENST00000553289 ATP5JP18859 108 aa12.92□□□□□ -0.34
SYNE2-208ENST00000553289 DCAF17Q5H9S7 520 aaPredicted RBP12.92□□□□□ -0.34
SYNE2-208ENST00000553289 WDR44Q5JSH3 913 aa12.92□□□□□ -0.34
SYNE2-208ENST00000553289 GPR161Q8N6U8 529 aaKnown RBP12.92□□□□□ -0.34
SYNE2-208ENST00000553289 ARMT1Q9H993 441 aa12.92□□□□□ -0.34
SYNE2-208ENST00000553289 SMTNP53814 917 aa12.92□□□□□ -0.34
SYNE2-208ENST00000553289 PIK3AP1Q6ZUJ8 805 aa12.92□□□□□ -0.34
SYNE2-208ENST00000553289 CSGALNACT2Q8N6G5 542 aa12.92□□□□□ -0.34
SYNE2-208ENST00000553289 CNBD1Q8NA66 436 aa12.92□□□□□ -0.34
SYNE2-208ENST00000553289 EXOC7Q9UPT5 735 aa12.92□□□□□ -0.34
SYNE2-208ENST00000553289 MYCNP04198 464 aaPredicted RBP12.91□□□□□ -0.34
SYNE2-208ENST00000553289 SUCLG2Q96I99 432 aa12.91□□□□□ -0.34
SYNE2-208ENST00000553289 FAM227BQ96M60 508 aa12.91□□□□□ -0.34
SYNE2-208ENST00000553289 CBX8Q9HC52 389 aa12.91□□□□□ -0.34
SYNE2-208ENST00000553289 ABCC4O15439 1325 aa12.91□□□□□ -0.34
SYNE2-208ENST00000553289 ZNF202O95125 648 aa12.91□□□□□ -0.34
SYNE2-208ENST00000553289 GJC1P36383 396 aa12.91□□□□□ -0.34
SYNE2-208ENST00000553289 NONOQ15233 471 aaKnown RBP eCLIP12.91□□□□□ -0.34
SYNE2-208ENST00000553289 ARHGEF10LQ9HCE6 1279 aa12.91□□□□□ -0.34
SYNE2-208ENST00000553289 V9GY48 417 aaPredicted RBP12.91□□□□□ -0.34
SYNE2-208ENST00000553289 ACTN4O43707 911 aaKnown RBP12.91□□□□□ -0.34
SYNE2-208ENST00000553289 SETDB1Q15047 1291 aa12.91□□□□□ -0.34
SYNE2-208ENST00000553289 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.91□□□□□ -0.34
SYNE2-208ENST00000553289 TXNDC16Q9P2K2 825 aa12.91□□□□□ -0.34
SYNE2-208ENST00000553289 TSKSQ9UJT2 592 aa12.91□□□□□ -0.34
SYNE2-208ENST00000553289 POLR2DO15514 142 aaKnown RBP12.9□□□□□ -0.34
SYNE2-208ENST00000553289 TNFAIP3P21580 790 aa12.9□□□□□ -0.34
SYNE2-208ENST00000553289 NUCKS1Q9H1E3 243 aaKnown RBP12.9□□□□□ -0.34
SYNE2-208ENST00000553289 ATP10AO60312 1499 aa12.9□□□□□ -0.34
SYNE2-208ENST00000553289 FCHSD1Q86WN1 690 aa12.9□□□□□ -0.34
SYNE2-208ENST00000553289 NOX5Q96PH1 765 aa12.9□□□□□ -0.34
SYNE2-208ENST00000553289 PLIN2Q99541 437 aa12.9□□□□□ -0.34
SYNE2-208ENST00000553289 ASIC2Q16515 512 aa12.9□□□□□ -0.34
SYNE2-208ENST00000553289 FNBP1Q96RU3 617 aa12.9□□□□□ -0.34
SYNE2-208ENST00000553289 PNMA6EA0A0J9YXQ4 647 aa12.9□□□□□ -0.34
SYNE2-208ENST00000553289 BACH1O14867 736 aa12.9□□□□□ -0.34
SYNE2-208ENST00000553289 KRT40Q6A162 431 aa12.9□□□□□ -0.34
SYNE2-208ENST00000553289 C8orf74Q6P047 294 aa12.9□□□□□ -0.34
SYNE2-208ENST00000553289 C8orf37Q96NL8 207 aa12.9□□□□□ -0.34
SYNE2-208ENST00000553289 VPS16Q9H269 839 aa12.9□□□□□ -0.34
SYNE2-208ENST00000553289 TFCP2L1Q9NZI6 479 aa12.9□□□□□ -0.34
SYNE2-208ENST00000553289 BRD1O95696 1058 aa12.9□□□□□ -0.35
SYNE2-208ENST00000553289 SLC9C1Q4G0N8 1177 aa12.9□□□□□ -0.35
SYNE2-208ENST00000553289 CCDC63Q8NA47 563 aa12.9□□□□□ -0.35
SYNE2-208ENST00000553289 PLEKHG3A1L390 1219 aa12.89□□□□□ -0.35
SYNE2-208ENST00000553289 CCNT1O60563 726 aaKnown RBP12.89□□□□□ -0.35
SYNE2-208ENST00000553289 UFL1O94874 794 aa12.89□□□□□ -0.35
SYNE2-208ENST00000553289 POSTNQ15063 836 aa12.89□□□□□ -0.35
SYNE2-208ENST00000553289 PAXIP1Q6ZW49 1069 aaPredicted RBP12.89□□□□□ -0.35
SYNE2-208ENST00000553289 LMBRD1Q9NUN5 540 aa12.89□□□□□ -0.35
SYNE2-208ENST00000553289 NKIRAS1Q9NYS0 192 aa12.89□□□□□ -0.35
SYNE2-208ENST00000553289 GGA1Q9UJY5 639 aa12.89□□□□□ -0.35
SYNE2-208ENST00000553289 GNPATO15228 680 aa12.89□□□□□ -0.35
SYNE2-208ENST00000553289 EIF4A1P60842 406 aaKnown RBP12.89□□□□□ -0.35
SYNE2-208ENST00000553289 CCDC84Q86UT8 332 aaPredicted RBP12.89□□□□□ -0.35
SYNE2-208ENST00000553289 UBL4BQ8N7F7 174 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms