RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 RNF225M0QZC1 329 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-214ENST00000552783 CPLX1O14810 134 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 CUTAO60888 179 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 YEATS4O95619 227 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 CHMP4BP1P59074 171 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 SART3Q15020 963 aaKnown RBP5.56□□□□□ -1.52
LIMA1-214ENST00000552783 SLC39A14Q15043 492 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 LRRC31Q6UY01 552 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 USP49Q70CQ1 688 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 CDC5LQ99459 802 aaKnown RBP5.56□□□□□ -1.52
LIMA1-214ENST00000552783 MAP3K14Q99558 947 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 COPRSQ9NQ92 184 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 PAG1Q9NWQ8 432 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 L1RE1Q9UN81 338 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 AXIN2Q9Y2T1 843 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 MRC1P22897 1456 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 ATP8B1O43520 1251 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 MDM2Q00987 491 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-214ENST00000552783 LRRC24Q50LG9 513 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 ZMYM1Q5SVZ6 1142 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 ATL3Q6DD88 541 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 SYNE3Q6ZMZ3 975 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 VPS37DQ86XT2 251 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 GOLGA1Q92805 767 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 MYL10Q9BUA6 226 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 C19orf44Q9H6X5 657 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 DDX21Q9NR30 783 aaKnown RBP eCLIP5.56□□□□□ -1.52
LIMA1-214ENST00000552783 NWD2Q9ULI1 1742 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 TFR2Q9UP52 801 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 NFE2L3Q9Y4A8 694 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 SH3TC1Q8TE82 1336 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 LOC102724159A0A0B4J2E5 919 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 CCDC151A5D8V7 595 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 EIF3CLB5ME19 914 aaKnown RBP5.56□□□□□ -1.52
LIMA1-214ENST00000552783 ZSCAN12O43309 604 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 PRC1O43663 620 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 FGAP02671 866 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 ZNF18P17022 549 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 CDC25AP30304 524 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 IRX3P78415 501 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-214ENST00000552783 PWP2Q15269 919 aaKnown RBP5.56□□□□□ -1.52
LIMA1-214ENST00000552783 E2F4Q16254 413 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 SLC9C2Q5TAH2 1124 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 ATG9AQ7Z3C6 839 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 EIF3CQ99613 913 aaKnown RBP5.56□□□□□ -1.52
LIMA1-214ENST00000552783 NBPF3Q9H094 633 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 EHD4Q9H223 541 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 RABEP2Q9H5N1 569 aa5.56□□□□□ -1.52
LIMA1-214ENST00000552783 HMGB1P09429 215 aaKnown RBP5.55□□□□□ -1.52
LIMA1-214ENST00000552783 GPTP24298 496 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 GPS2Q13227 327 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 SCARF1Q14162 830 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 SPECC1LQ69YQ0 1117 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 NCAPH2Q6IBW4 605 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 APTXQ7Z2E3 356 aaKnown RBP5.55□□□□□ -1.52
LIMA1-214ENST00000552783 LRP10Q7Z4F1 713 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 ACRBPQ8NEB7 543 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 DSCC1Q9BVC3 393 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 PUS3Q9BZE2 481 aaKnown RBP5.55□□□□□ -1.52
LIMA1-214ENST00000552783 TSPYL1Q9H0U9 437 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 TRIM10Q9UDY6 481 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 STX10O60499 249 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 ZMYND10O75800 440 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 A1BGP04217 495 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 RBL2Q08999 1139 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 ZNF569Q5MCW4 686 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 SRGAP1Q7Z6B7 1085 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 SMYD4Q8IYR2 804 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-214ENST00000552783 IFNL2Q8IZJ0 200 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 DRC1Q96MC2 740 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 PUS7LQ9H0K6 701 aaKnown RBP5.55□□□□□ -1.52
LIMA1-214ENST00000552783 PSD3Q9NYI0 1048 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 MAN1B1Q9UKM7 699 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 ADGRG1Q9Y653 693 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 LMTK3Q96Q04 1460 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 ANKARQ7Z5J8 1434 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 NRDCO43847 1150 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 TUBB4AP04350 444 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 SNRPA1P09661 255 aaKnown RBP5.55□□□□□ -1.52
LIMA1-214ENST00000552783 ATP2B1P20020 1258 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 GUCY1A2P33402 732 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 STX17P56962 302 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 CASP8Q14790 479 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 RESP18Q5W5W9 173 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 KRT40Q6A162 431 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 RALYLQ86SE5 291 aaKnown RBP5.55□□□□□ -1.52
LIMA1-214ENST00000552783 MB21D2Q8IYB1 491 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-214ENST00000552783 GSPT2Q8IYD1 628 aaKnown RBP5.55□□□□□ -1.52
LIMA1-214ENST00000552783 SLC35F6Q8N357 371 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 IQUBQ8NA54 791 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 CNNM3Q8NE01 707 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 AK7Q96M32 723 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 METTL22Q9BUU2 404 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-214ENST00000552783 EFCC1Q9HA90 598 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 KCNH3Q9ULD8 1083 aa5.55□□□□□ -1.52
LIMA1-214ENST00000552783 RANBP6O60518 1105 aaKnown RBP5.54□□□□□ -1.52
LIMA1-214ENST00000552783 TPM1P09493 284 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 IFIT1P09914 478 aaKnown RBP5.54□□□□□ -1.52
LIMA1-214ENST00000552783 CD44P16070 742 aaKnown RBP5.54□□□□□ -1.52
LIMA1-214ENST00000552783 ADORA1P30542 326 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms