RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 SH3RF3Q8TEJ3 882 aaPredicted RBP11.44□□□□□ -0.58
LIMA1-211ENST00000552338 ZC3H15Q8WU90 426 aaKnown RBP11.44□□□□□ -0.58
LIMA1-211ENST00000552338 NACAP1Q9BZK3 213 aa11.44□□□□□ -0.58
LIMA1-211ENST00000552338 ADARB2Q9NS39 739 aaKnown RBP11.44□□□□□ -0.58
LIMA1-211ENST00000552338 USP40Q9NVE5 1235 aa11.44□□□□□ -0.58
LIMA1-211ENST00000552338 RBM8AQ9Y5S9 174 aaKnown RBP11.44□□□□□ -0.58
LIMA1-211ENST00000552338 GJA3Q9Y6H8 435 aa11.44□□□□□ -0.58
LIMA1-211ENST00000552338 SIPA1L1O43166 1804 aa11.44□□□□□ -0.58
LIMA1-211ENST00000552338 ROBO3Q96MS0 1386 aa11.43□□□□□ -0.58
LIMA1-211ENST00000552338 PRKAB2O43741 272 aa11.43□□□□□ -0.58
LIMA1-211ENST00000552338 EPS15P42566 896 aa11.43□□□□□ -0.58
LIMA1-211ENST00000552338 MAP3K10Q02779 954 aa11.43□□□□□ -0.58
LIMA1-211ENST00000552338 USP50Q70EL3 339 aaPredicted RBP11.43□□□□□ -0.58
LIMA1-211ENST00000552338 TEX11Q8IYF3 940 aa11.43□□□□□ -0.58
LIMA1-211ENST00000552338 TM6SF1Q9BZW5 370 aa11.43□□□□□ -0.58
LIMA1-211ENST00000552338 UPF2Q9HAU5 1272 aaKnown RBP11.43□□□□□ -0.58
LIMA1-211ENST00000552338 ARPP21Q9UBL0 812 aaPredicted RBP11.43□□□□□ -0.58
LIMA1-211ENST00000552338 ZNF70Q9UC06 446 aaPredicted RBP11.43□□□□□ -0.58
LIMA1-211ENST00000552338 PCDHAC2Q9Y5I4 1007 aa11.43□□□□□ -0.58
LIMA1-211ENST00000552338 FLT1P17948 1338 aa11.42□□□□□ -0.58
LIMA1-211ENST00000552338 SHTN1A0MZ66 631 aa11.42□□□□□ -0.58
LIMA1-211ENST00000552338 IQCA1LA6NCM1 817 aa11.42□□□□□ -0.58
LIMA1-211ENST00000552338 MYO1BO43795 1136 aa11.42□□□□□ -0.58
LIMA1-211ENST00000552338 CYP21A2P08686 494 aa11.42□□□□□ -0.58
LIMA1-211ENST00000552338 HIRAP54198 1017 aaPredicted RBP11.42□□□□□ -0.58
LIMA1-211ENST00000552338 KIF4BQ2VIQ3 1234 aa11.42□□□□□ -0.58
LIMA1-211ENST00000552338 C12orf60Q5U649 245 aa11.42□□□□□ -0.58
LIMA1-211ENST00000552338 RNF20Q5VTR2 975 aa11.42□□□□□ -0.58
LIMA1-211ENST00000552338 CREB3L3Q68CJ9 461 aa11.42□□□□□ -0.58
LIMA1-211ENST00000552338 CTR9Q6PD62 1173 aa11.42□□□□□ -0.58
LIMA1-211ENST00000552338 TGFBRAP1Q8WUH2 860 aa11.42□□□□□ -0.58
LIMA1-211ENST00000552338 SDR42E1Q8WUS8 393 aa11.42□□□□□ -0.58
LIMA1-211ENST00000552338 FAM151AQ8WW52 585 aa11.42□□□□□ -0.58
LIMA1-211ENST00000552338 KIF2CQ99661 725 aa11.42□□□□□ -0.58
LIMA1-211ENST00000552338 C22orf23Q9BZE7 217 aa11.42□□□□□ -0.58
LIMA1-211ENST00000552338 OSBPL5Q9H0X9 879 aaPredicted RBP11.42□□□□□ -0.58
LIMA1-211ENST00000552338 NAPBQ9H115 298 aa11.42□□□□□ -0.58
LIMA1-211ENST00000552338 DHX36Q9H2U1 1008 aaKnown RBP11.42□□□□□ -0.58
LIMA1-211ENST00000552338 TDRD3Q9H7E2 651 aaKnown RBP11.42□□□□□ -0.58
LIMA1-211ENST00000552338 DDX4Q9NQI0 724 aaKnown RBP11.42□□□□□ -0.58
LIMA1-211ENST00000552338 FAM198AQ9UFP1 575 aa11.42□□□□□ -0.58
LIMA1-211ENST00000552338 HACL1Q9UJ83 578 aa11.42□□□□□ -0.58
LIMA1-211ENST00000552338 MYH8P13535 1937 aa11.41□□□□□ -0.58
LIMA1-211ENST00000552338 SLC27A2O14975 620 aa11.41□□□□□ -0.58
LIMA1-211ENST00000552338 EGFRP00533 1210 aa11.41□□□□□ -0.58
LIMA1-211ENST00000552338 MCCP23508 829 aa11.41□□□□□ -0.58
LIMA1-211ENST00000552338 LMOD1P29536 600 aaPredicted RBP11.41□□□□□ -0.58
LIMA1-211ENST00000552338 GABPAQ06546 454 aa11.41□□□□□ -0.58
LIMA1-211ENST00000552338 TNFAIP1Q13829 316 aa11.41□□□□□ -0.58
LIMA1-211ENST00000552338 NBPF9Q3BBW0 867 aa11.41□□□□□ -0.58
LIMA1-211ENST00000552338 SAMD7Q7Z3H4 446 aa11.41□□□□□ -0.58
LIMA1-211ENST00000552338 PNMA8AQ86V59 439 aaPredicted RBP11.41□□□□□ -0.58
LIMA1-211ENST00000552338 STAG1Q8WVM7 1258 aa11.41□□□□□ -0.58
LIMA1-211ENST00000552338 DDRGK1Q96HY6 314 aa11.41□□□□□ -0.58
LIMA1-211ENST00000552338 MTA3Q9BTC8 594 aa11.41□□□□□ -0.58
LIMA1-211ENST00000552338 EHD4Q9H223 541 aa11.41□□□□□ -0.58
LIMA1-211ENST00000552338 PPP2R3BQ9Y5P8 575 aa11.41□□□□□ -0.58
LIMA1-211ENST00000552338 CNTNAP1P78357 1384 aa11.41□□□□□ -0.58
LIMA1-211ENST00000552338 USP17L12C9JPN9 530 aa11.4□□□□□ -0.58
LIMA1-211ENST00000552338 USP17L21D6R901 530 aa11.4□□□□□ -0.58
LIMA1-211ENST00000552338 ZNF213O14771 459 aa11.4□□□□□ -0.58
LIMA1-211ENST00000552338 TBC1D12O60347 775 aa11.4□□□□□ -0.58
LIMA1-211ENST00000552338 ZKSCAN1P17029 563 aaPredicted RBP11.4□□□□□ -0.58
LIMA1-211ENST00000552338 USP5P45974 858 aa11.4□□□□□ -0.58
LIMA1-211ENST00000552338 RBM5P52756 815 aaKnown RBP eCLIP11.4□□□□□ -0.58
LIMA1-211ENST00000552338 NFIAQ12857 509 aa11.4□□□□□ -0.58
LIMA1-211ENST00000552338 KRT32Q14532 448 aa11.4□□□□□ -0.58
LIMA1-211ENST00000552338 IMMTQ16891 758 aaKnown RBP11.4□□□□□ -0.58
LIMA1-211ENST00000552338 TTC6Q86TZ1 520 aa11.4□□□□□ -0.58
LIMA1-211ENST00000552338 FOXP4Q8IVH2 680 aaPredicted RBP11.4□□□□□ -0.58
LIMA1-211ENST00000552338 FBXL16Q8N461 479 aa11.4□□□□□ -0.58
LIMA1-211ENST00000552338 TRPM4Q8TD43 1214 aa11.4□□□□□ -0.58
LIMA1-211ENST00000552338 NBPF3Q9H094 633 aa11.4□□□□□ -0.58
LIMA1-211ENST00000552338 TAF1DQ9H5J8 278 aaPredicted RBP11.4□□□□□ -0.58
LIMA1-211ENST00000552338 TMOD2Q9NZR1 351 aa11.4□□□□□ -0.58
LIMA1-211ENST00000552338 SNX14Q9Y5W7 946 aa11.4□□□□□ -0.58
LIMA1-211ENST00000552338 GREB1LQ9C091 1923 aaPredicted RBP11.4□□□□□ -0.58
LIMA1-211ENST00000552338 ORC4O43929 436 aa11.39□□□□□ -0.59
LIMA1-211ENST00000552338 APPP05067 770 aa11.39□□□□□ -0.59
LIMA1-211ENST00000552338 EPHX2P34913 555 aa11.39□□□□□ -0.59
LIMA1-211ENST00000552338 PPARAQ07869 468 aa11.39□□□□□ -0.59
LIMA1-211ENST00000552338 SH3BP5LQ7L8J4 393 aa11.39□□□□□ -0.59
LIMA1-211ENST00000552338 APOBEC3FQ8IUX4 373 aaKnown RBP11.39□□□□□ -0.59
LIMA1-211ENST00000552338 RASEFQ8IZ41 740 aa11.39□□□□□ -0.59
LIMA1-211ENST00000552338 ALDH8A1Q9H2A2 487 aaPredicted RBP11.39□□□□□ -0.59
LIMA1-211ENST00000552338 MCM9Q9NXL9 1143 aa11.39□□□□□ -0.59
LIMA1-211ENST00000552338 PI4KBQ9UBF8 816 aa11.39□□□□□ -0.59
LIMA1-211ENST00000552338 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.39□□□□□ -0.59
LIMA1-211ENST00000552338 WDR19Q8NEZ3 1342 aa11.38□□□□□ -0.59
LIMA1-211ENST00000552338 HMGB1P09429 215 aaKnown RBP11.38□□□□□ -0.59
LIMA1-211ENST00000552338 VEGFAP15692 232 aaPredicted RBP11.38□□□□□ -0.59
LIMA1-211ENST00000552338 TDO2P48775 406 aa11.38□□□□□ -0.59
LIMA1-211ENST00000552338 TNNI2P48788 182 aa11.38□□□□□ -0.59
LIMA1-211ENST00000552338 PLCD1P51178 756 aa11.38□□□□□ -0.59
LIMA1-211ENST00000552338 TBC1D10BQ4KMP7 808 aaPredicted RBP11.38□□□□□ -0.59
LIMA1-211ENST00000552338 AKNAD1Q5T1N1 836 aa11.38□□□□□ -0.59
LIMA1-211ENST00000552338 C16orf86Q6ZW13 317 aa11.38□□□□□ -0.59
LIMA1-211ENST00000552338 MAPKAPK5Q8IW41 473 aa11.38□□□□□ -0.59
LIMA1-211ENST00000552338 TEPSINQ96N21 525 aa11.38□□□□□ -0.59
LIMA1-211ENST00000552338 RNF41Q9H4P4 317 aaPredicted RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms