RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	4.16	□□□□□ -1.74
PTCH1-223	ENST00000551623	TNFRSF10B	O14763	440 aa		4.16	□□□□□ -1.74
PTCH1-223	ENST00000551623	DYNC1LI2	O43237	492 aa	Predicted RBP	4.16	□□□□□ -1.74
PTCH1-223	ENST00000551623	RAPGEF3	O95398	923 aa		4.16	□□□□□ -1.74
PTCH1-223	ENST00000551623	C1QTNF9	P0C862	333 aa		4.16	□□□□□ -1.74
PTCH1-223	ENST00000551623	CSRNP1	Q96S65	589 aa		4.16	□□□□□ -1.74
PTCH1-223	ENST00000551623	FAM105A	Q9NUU6	356 aa		4.16	□□□□□ -1.74
PTCH1-223	ENST00000551623	DENND4B	O75064	1496 aa	Predicted RBP	4.16	□□□□□ -1.74
PTCH1-223	ENST00000551623	KRT1	P04264	644 aa		4.15	□□□□□ -1.75
PTCH1-223	ENST00000551623	CES1	P23141	567 aa		4.15	□□□□□ -1.75
PTCH1-223	ENST00000551623	GSTM4	Q03013	218 aa		4.15	□□□□□ -1.75
PTCH1-223	ENST00000551623	SLC23A3	Q6PIS1	610 aa		4.15	□□□□□ -1.75
PTCH1-223	ENST00000551623	DYM	Q7RTS9	669 aa		4.15	□□□□□ -1.75
PTCH1-223	ENST00000551623	ZNF438	Q7Z4V0	828 aa		4.15	□□□□□ -1.75
PTCH1-223	ENST00000551623	FAM181A	Q8N9Y4	354 aa		4.15	□□□□□ -1.75
PTCH1-223	ENST00000551623	NXPE3	Q969Y0	559 aa		4.15	□□□□□ -1.75
PTCH1-223	ENST00000551623	LIN37	Q96GY3	246 aa	Predicted RBP	4.15	□□□□□ -1.75
PTCH1-223	ENST00000551623	NRSN2	Q9GZP1	204 aa		4.15	□□□□□ -1.75
PTCH1-223	ENST00000551623	DAGLA	Q9Y4D2	1042 aa		4.15	□□□□□ -1.75
PTCH1-223	ENST00000551623	ATP10B	O94823	1461 aa		4.15	□□□□□ -1.75
PTCH1-223	ENST00000551623	GOLGA3	Q08378	1498 aa		4.15	□□□□□ -1.75
PTCH1-223	ENST00000551623	ZFYVE16	Q7Z3T8	1539 aa		4.15	□□□□□ -1.75
PTCH1-223	ENST00000551623	RERE	Q9P2R6	1566 aa		4.14	□□□□□ -1.75
PTCH1-223	ENST00000551623	FER1L4	A9Z1Z3	1794 aa		4.14	□□□□□ -1.75
PTCH1-223	ENST00000551623	NFIB	O00712	420 aa		4.14	□□□□□ -1.75
PTCH1-223	ENST00000551623	ESRRA	P11474	423 aa	Predicted RBP	4.14	□□□□□ -1.75
PTCH1-223	ENST00000551623	ASPA	P45381	313 aa		4.14	□□□□□ -1.75
PTCH1-223	ENST00000551623	AOC3	Q16853	763 aa		4.14	□□□□□ -1.75
PTCH1-223	ENST00000551623	ANGEL2	Q5VTE6	544 aa	Known RBP	4.14	□□□□□ -1.75
PTCH1-223	ENST00000551623	C1orf127	Q8N9H9	656 aa		4.14	□□□□□ -1.75
PTCH1-223	ENST00000551623	HRASLS5	Q96KN8	279 aa		4.14	□□□□□ -1.75
PTCH1-223	ENST00000551623	GSX1	Q9H4S2	264 aa	Predicted RBP	4.14	□□□□□ -1.75
PTCH1-223	ENST00000551623	VRTN	Q9H8Y1	702 aa		4.14	□□□□□ -1.75
PTCH1-223	ENST00000551623	PLA2R1	Q13018	1463 aa		4.13	□□□□□ -1.75
PTCH1-223	ENST00000551623	EIF4EBP3	O60516	100 aa	Predicted RBP	4.13	□□□□□ -1.75
PTCH1-223	ENST00000551623	IFI16	Q16666	785 aa	Known RBP	4.13	□□□□□ -1.75
PTCH1-223	ENST00000551623	AKAP4	Q5JQC9	854 aa		4.13	□□□□□ -1.75
PTCH1-223	ENST00000551623	PRR23B	Q6ZRT6	265 aa		4.13	□□□□□ -1.75
PTCH1-223	ENST00000551623	FAM200A	Q8TCP9	573 aa		4.13	□□□□□ -1.75
PTCH1-223	ENST00000551623	GLMN	Q92990	594 aa		4.13	□□□□□ -1.75
PTCH1-223	ENST00000551623	C20orf173	Q96LM9	149 aa		4.13	□□□□□ -1.75
PTCH1-223	ENST00000551623	OSMR	Q99650	979 aa		4.13	□□□□□ -1.75
PTCH1-223	ENST00000551623	LGR6	Q9HBX8	967 aa		4.13	□□□□□ -1.75
PTCH1-223	ENST00000551623	AP4E1	Q9UPM8	1137 aa		4.13	□□□□□ -1.75
PTCH1-223	ENST00000551623	CFAP74	Q9C0B2	1584 aa		4.13	□□□□□ -1.75
PTCH1-223	ENST00000551623	ARID4B	Q4LE39	1312 aa	Predicted RBP	4.13	□□□□□ -1.75
PTCH1-223	ENST00000551623	NPAT	Q14207	1427 aa		4.12	□□□□□ -1.75
PTCH1-223	ENST00000551623	TCOF1	Q13428	1488 aa	Known RBP	4.12	□□□□□ -1.75
PTCH1-223	ENST00000551623	RAPGEF2	Q9Y4G8	1499 aa		4.12	□□□□□ -1.75
PTCH1-223	ENST00000551623	AGL	P35573	1532 aa		4.12	□□□□□ -1.75
PTCH1-223	ENST00000551623	NPIPB6	E9PJ23	425 aa		4.12	□□□□□ -1.75
PTCH1-223	ENST00000551623	CTSB	P07858	339 aa		4.12	□□□□□ -1.75
PTCH1-223	ENST00000551623	FAM87A	P0C7U9	286 aa		4.12	□□□□□ -1.75
PTCH1-223	ENST00000551623	HOXA5	P20719	270 aa		4.12	□□□□□ -1.75
PTCH1-223	ENST00000551623	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	4.12	□□□□□ -1.75
PTCH1-223	ENST00000551623	NUDT16	Q96DE0	195 aa	Known RBP	4.12	□□□□□ -1.75
PTCH1-223	ENST00000551623	PRIMPOL	Q96LW4	560 aa		4.12	□□□□□ -1.75
PTCH1-223	ENST00000551623	ZKSCAN3	Q9BRR0	538 aa		4.12	□□□□□ -1.75
PTCH1-223	ENST00000551623	PRDM7	Q9NQW5	492 aa		4.12	□□□□□ -1.75
PTCH1-223	ENST00000551623		U3KQE9	123 aa		4.12	□□□□□ -1.75
PTCH1-223	ENST00000551623	C9orf84	Q5VXU9	1444 aa		4.12	□□□□□ -1.75
PTCH1-223	ENST00000551623	TRAPPC8	Q9Y2L5	1435 aa		4.12	□□□□□ -1.75
PTCH1-223	ENST00000551623	ATP10A	O60312	1499 aa		4.11	□□□□□ -1.75
PTCH1-223	ENST00000551623	HECW1	Q76N89	1606 aa		4.11	□□□□□ -1.75
PTCH1-223	ENST00000551623	ALK	Q9UM73	1620 aa		4.11	□□□□□ -1.75
PTCH1-223	ENST00000551623	ZBTB39	O15060	712 aa		4.11	□□□□□ -1.75
PTCH1-223	ENST00000551623	CEACAM5	P06731	702 aa		4.11	□□□□□ -1.75
PTCH1-223	ENST00000551623	GLI1	P08151	1106 aa		4.11	□□□□□ -1.75
PTCH1-223	ENST00000551623	XKR5	Q6UX68	686 aa		4.11	□□□□□ -1.75
PTCH1-223	ENST00000551623	DBX2	Q6ZNG2	339 aa		4.11	□□□□□ -1.75
PTCH1-223	ENST00000551623	ABTB2	Q8N961	1025 aa		4.11	□□□□□ -1.75
PTCH1-223	ENST00000551623	ASAP3	Q8TDY4	903 aa		4.11	□□□□□ -1.75
PTCH1-223	ENST00000551623	RELT	Q969Z4	430 aa		4.11	□□□□□ -1.75
PTCH1-223	ENST00000551623	PPP1R12C	Q9BZL4	782 aa		4.11	□□□□□ -1.75
PTCH1-223	ENST00000551623	MKNK2	Q9HBH9	465 aa		4.11	□□□□□ -1.75
PTCH1-223	ENST00000551623	RAD18	Q9NS91	495 aa		4.11	□□□□□ -1.75
PTCH1-223	ENST00000551623	STIM2	Q9P246	746 aa		4.11	□□□□□ -1.75
PTCH1-223	ENST00000551623	CTNND2	Q9UQB3	1225 aa		4.11	□□□□□ -1.75
PTCH1-223	ENST00000551623	SETD1B	Q9UPS6	1966 aa	Known RBP	4.11	□□□□□ -1.75
PTCH1-223	ENST00000551623	KDM5C	P41229	1560 aa		4.1	□□□□□ -1.75
PTCH1-223	ENST00000551623	TMEM265	A0A087WTH1	108 aa		4.1	□□□□□ -1.75
PTCH1-223	ENST00000551623	UBTF	P17480	764 aa	Known RBP	4.1	□□□□□ -1.75
PTCH1-223	ENST00000551623	MAOB	P27338	520 aa		4.1	□□□□□ -1.75
PTCH1-223	ENST00000551623	AFM	P43652	599 aa		4.1	□□□□□ -1.75
PTCH1-223	ENST00000551623	CDK5R2	Q13319	367 aa		4.1	□□□□□ -1.75
PTCH1-223	ENST00000551623	FYB2	Q5VWT5	728 aa		4.1	□□□□□ -1.75
PTCH1-223	ENST00000551623	MPZL3	Q6UWV2	235 aa		4.1	□□□□□ -1.75
PTCH1-223	ENST00000551623	FBXO15	Q8NCQ5	510 aa	Predicted RBP	4.1	□□□□□ -1.75
PTCH1-223	ENST00000551623	PMEPA1	Q969W9	287 aa		4.1	□□□□□ -1.75
PTCH1-223	ENST00000551623	BHLHE41	Q9C0J9	482 aa	Predicted RBP	4.1	□□□□□ -1.75
PTCH1-223	ENST00000551623	CHRD	Q9H2X0	955 aa		4.1	□□□□□ -1.75
PTCH1-223	ENST00000551623	TTBK1	Q5TCY1	1321 aa	Predicted RBP	4.1	□□□□□ -1.75
PTCH1-223	ENST00000551623	CPS1	P31327	1500 aa		4.1	□□□□□ -1.75
PTCH1-223	ENST00000551623	PRMT3	O60678	531 aa		4.09	□□□□□ -1.75
PTCH1-223	ENST00000551623	CYP11A1	P05108	521 aa		4.09	□□□□□ -1.75
PTCH1-223	ENST00000551623	RPLP1	P05386	114 aa	Known RBP	4.09	□□□□□ -1.75
PTCH1-223	ENST00000551623	HSPA1L	P34931	641 aa		4.09	□□□□□ -1.75
PTCH1-223	ENST00000551623	OXCT1	P55809	520 aa		4.09	□□□□□ -1.75
PTCH1-223	ENST00000551623	NAA30	Q147X3	362 aa	Predicted RBP	4.09	□□□□□ -1.75
PTCH1-223	ENST00000551623	POU4F3	Q15319	338 aa		4.09	□□□□□ -1.75

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