RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 SPRED2Q7Z698 418 aa5.91□□□□□ -1.46
LIMA1-206ENST00000550611 GLIS3Q8NEA6 775 aa5.91□□□□□ -1.46
LIMA1-206ENST00000550611 CXXC1Q9P0U4 656 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-206ENST00000550611 ZMYM3Q14202 1370 aa5.91□□□□□ -1.46
LIMA1-206ENST00000550611 EEA1Q15075 1411 aa5.91□□□□□ -1.46
LIMA1-206ENST00000550611 PTPRKQ15262 1439 aa5.91□□□□□ -1.46
LIMA1-206ENST00000550611 CFAP74Q9C0B2 1584 aa5.9□□□□□ -1.46
LIMA1-206ENST00000550611 NFICP08651 508 aa5.9□□□□□ -1.46
LIMA1-206ENST00000550611 ELOAQ14241 798 aaKnown RBP5.9□□□□□ -1.46
LIMA1-206ENST00000550611 NAA30Q147X3 362 aaPredicted RBP5.9□□□□□ -1.46
LIMA1-206ENST00000550611 ZNF574Q6ZN55 896 aaPredicted RBP5.9□□□□□ -1.46
LIMA1-206ENST00000550611 FAM168AQ92567 244 aa5.9□□□□□ -1.46
LIMA1-206ENST00000550611 CLUAP1Q96AJ1 413 aa5.9□□□□□ -1.46
LIMA1-206ENST00000550611 SLC38A3Q99624 504 aa5.9□□□□□ -1.46
LIMA1-206ENST00000550611 NRSN2Q9GZP1 204 aa5.9□□□□□ -1.46
LIMA1-206ENST00000550611 ACTL7BQ9Y614 415 aa5.9□□□□□ -1.46
LIMA1-206ENST00000550611 TCOF1Q13428 1488 aaKnown RBP5.9□□□□□ -1.47
LIMA1-206ENST00000550611 CDK13Q14004 1512 aaKnown RBP5.89□□□□□ -1.47
LIMA1-206ENST00000550611 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-206ENST00000550611 ESRRAP11474 423 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-206ENST00000550611 FUT4P22083 530 aa5.89□□□□□ -1.47
LIMA1-206ENST00000550611 TMEM132AQ24JP5 1023 aa5.89□□□□□ -1.47
LIMA1-206ENST00000550611 OSMRQ99650 979 aa5.89□□□□□ -1.47
LIMA1-206ENST00000550611 MKNK1Q9BUB5 465 aa5.89□□□□□ -1.47
LIMA1-206ENST00000550611 BHLHE41Q9C0J9 482 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-206ENST00000550611 CHRDQ9H2X0 955 aa5.89□□□□□ -1.47
LIMA1-206ENST00000550611 SEMA6CQ9H3T2 930 aa5.89□□□□□ -1.47
LIMA1-206ENST00000550611 MLH3Q9UHC1 1453 aa5.89□□□□□ -1.47
LIMA1-206ENST00000550611 OGFOD3Q6PK18 319 aa5.88□□□□□ -1.47
LIMA1-206ENST00000550611 SEZ6L2Q6UXD5 910 aa5.88□□□□□ -1.47
LIMA1-206ENST00000550611 CILP2Q8IUL8 1156 aa5.88□□□□□ -1.47
LIMA1-206ENST00000550611 ZKSCAN3Q9BRR0 538 aa5.88□□□□□ -1.47
LIMA1-206ENST00000550611 ACSS3Q9H6R3 686 aa5.88□□□□□ -1.47
LIMA1-206ENST00000550611 CDK11AQ9UQ88 783 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-206ENST00000550611 ZNF518AQ6AHZ1 1483 aa5.88□□□□□ -1.47
LIMA1-206ENST00000550611 GSTM4Q03013 218 aa5.87□□□□□ -1.47
LIMA1-206ENST00000550611 MESP2Q0VG99 397 aa5.87□□□□□ -1.47
LIMA1-206ENST00000550611 HP1BP3Q5SSJ5 553 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-206ENST00000550611 FAM84AQ96KN4 292 aa5.87□□□□□ -1.47
LIMA1-206ENST00000550611 GSX1Q9H4S2 264 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-206ENST00000550611 RC3H2Q9HBD1 1191 aaKnown RBP5.87□□□□□ -1.47
LIMA1-206ENST00000550611 C1GALT1Q9NS00 363 aa5.87□□□□□ -1.47
LIMA1-206ENST00000550611 MBNL3Q9NUK0 354 aaKnown RBP5.87□□□□□ -1.47
LIMA1-206ENST00000550611 ZMIZ1Q9ULJ6 1067 aa5.87□□□□□ -1.47
LIMA1-206ENST00000550611 TROQ12816 1431 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-206ENST00000550611 AGLP35573 1532 aa5.87□□□□□ -1.47
LIMA1-206ENST00000550611 KDM5CP41229 1560 aa5.87□□□□□ -1.47
LIMA1-206ENST00000550611 REREQ9P2R6 1566 aa5.87□□□□□ -1.47
LIMA1-206ENST00000550611 SETBP1Q9Y6X0 1596 aa5.86□□□□□ -1.47
LIMA1-206ENST00000550611 CPS1P31327 1500 aa5.86□□□□□ -1.47
LIMA1-206ENST00000550611 FMN1Q68DA7 1419 aa5.86□□□□□ -1.47
LIMA1-206ENST00000550611 EDN3P14138 238 aa5.86□□□□□ -1.47
LIMA1-206ENST00000550611 PCSK2P16519 638 aa5.86□□□□□ -1.47
LIMA1-206ENST00000550611 RAB6AP20340 208 aa5.86□□□□□ -1.47
LIMA1-206ENST00000550611 CDCA8Q53HL2 280 aa5.86□□□□□ -1.47
LIMA1-206ENST00000550611 FAM105AQ9NUU6 356 aa5.86□□□□□ -1.47
LIMA1-206ENST00000550611 LRRC7Q96NW7 1537 aa5.85□□□□□ -1.47
LIMA1-206ENST00000550611 PLA2R1Q13018 1463 aa5.85□□□□□ -1.47
LIMA1-206ENST00000550611 NPATQ14207 1427 aa5.85□□□□□ -1.47
LIMA1-206ENST00000550611 CNTLNQ9NXG0 1405 aa5.85□□□□□ -1.47
LIMA1-206ENST00000550611 RNASE1P07998 156 aaKnown RBP5.85□□□□□ -1.47
LIMA1-206ENST00000550611 CYP27C1Q4G0S4 372 aa5.85□□□□□ -1.47
LIMA1-206ENST00000550611 ATCAYQ86WG3 371 aa5.85□□□□□ -1.47
LIMA1-206ENST00000550611 GGNBP2Q9H3C7 697 aa5.85□□□□□ -1.47
LIMA1-206ENST00000550611 ZFYVE1Q9HBF4 777 aa5.85□□□□□ -1.47
LIMA1-206ENST00000550611 VWDEQ8N2E2 1590 aa5.84□□□□□ -1.47
LIMA1-206ENST00000550611 DIP2CQ9Y2E4 1556 aa5.84□□□□□ -1.47
LIMA1-206ENST00000550611 ARHGAP35Q9NRY4 1499 aa5.84□□□□□ -1.47
LIMA1-206ENST00000550611 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.84□□□□□ -1.47
LIMA1-206ENST00000550611 CD8BP10966 210 aa5.84□□□□□ -1.47
LIMA1-206ENST00000550611 BNIP3Q12983 259 aa5.84□□□□□ -1.47
LIMA1-206ENST00000550611 GGT6Q6P531 493 aa5.84□□□□□ -1.47
LIMA1-206ENST00000550611 DYMQ7RTS9 669 aa5.84□□□□□ -1.47
LIMA1-206ENST00000550611 ANKLE2Q86XL3 938 aa5.84□□□□□ -1.47
LIMA1-206ENST00000550611 NETO1Q8TDF5 533 aa5.84□□□□□ -1.47
LIMA1-206ENST00000550611 EDEM1Q92611 657 aa5.84□□□□□ -1.47
LIMA1-206ENST00000550611 ADAMTS6Q9UKP5 1117 aa5.84□□□□□ -1.47
LIMA1-206ENST00000550611 VAV3Q9UKW4 847 aa5.84□□□□□ -1.47
LIMA1-206ENST00000550611 STRCP1A6NGW2 1772 aa5.84□□□□□ -1.47
LIMA1-206ENST00000550611 SUPT6HQ7KZ85 1726 aaKnown RBP5.83□□□□□ -1.48
LIMA1-206ENST00000550611 DYNC1LI2O43237 492 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-206ENST00000550611 PDGFAP04085 211 aa5.83□□□□□ -1.48
LIMA1-206ENST00000550611 CYP11A1P05108 521 aa5.83□□□□□ -1.48
LIMA1-206ENST00000550611 ZNF865P0CJ78 1059 aaPredicted RBP5.83□□□□□ -1.48
LIMA1-206ENST00000550611 MAOBP27338 520 aa5.83□□□□□ -1.48
LIMA1-206ENST00000550611 LRRN4CLQ8ND94 238 aa5.83□□□□□ -1.48
LIMA1-206ENST00000550611 TTC16Q8NEE8 873 aa5.83□□□□□ -1.48
LIMA1-206ENST00000550611 ASAP3Q8TDY4 903 aa5.83□□□□□ -1.48
LIMA1-206ENST00000550611 STK32AQ8WU08 396 aa5.83□□□□□ -1.48
LIMA1-206ENST00000550611 TOX2Q96NM4 488 aa5.83□□□□□ -1.48
LIMA1-206ENST00000550611 FAM53CQ9NYF3 392 aa5.83□□□□□ -1.48
LIMA1-206ENST00000550611 ARHGAP5Q13017 1502 aa5.83□□□□□ -1.48
LIMA1-206ENST00000550611 CLIP1P30622 1438 aa5.82□□□□□ -1.48
LIMA1-206ENST00000550611 KIF14Q15058 1648 aa5.82□□□□□ -1.48
LIMA1-206ENST00000550611 NCANO14594 1321 aa5.82□□□□□ -1.48
LIMA1-206ENST00000550611 SYNGAP1Q96PV0 1343 aa5.82□□□□□ -1.48
LIMA1-206ENST00000550611 NEURL4Q96JN8 1562 aa5.82□□□□□ -1.48
LIMA1-206ENST00000550611 CEP170BQ9Y4F5 1589 aaPredicted RBP5.82□□□□□ -1.48
LIMA1-206ENST00000550611 EREGO14944 169 aa5.82□□□□□ -1.48
LIMA1-206ENST00000550611 MZF1P28698 734 aaPredicted RBP5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms