RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 IRF6O14896 467 aa22.87■■□□□ 1.25
CHMP1A-207ENST00000549328 RGS19P49795 217 aa22.87■■□□□ 1.25
CHMP1A-207ENST00000549328 MAP3K10Q02779 954 aa22.87■■□□□ 1.25
CHMP1A-207ENST00000549328 SNAPC2Q13487 334 aa22.87■■□□□ 1.25
CHMP1A-207ENST00000549328 HSP90AB4PQ58FF6 505 aa22.87■■□□□ 1.25
CHMP1A-207ENST00000549328 NOL9Q5SY16 702 aaKnown RBP22.87■■□□□ 1.25
CHMP1A-207ENST00000549328 RPAP2Q8IXW5 612 aaPredicted RBP22.87■■□□□ 1.25
CHMP1A-207ENST00000549328 CHMP4BQ9H444 224 aaKnown RBP22.87■■□□□ 1.25
CHMP1A-207ENST00000549328 DBNLQ9UJU6 430 aaKnown RBP22.87■■□□□ 1.25
CHMP1A-207ENST00000549328 ZSCAN29Q8IWY8 852 aaPredicted RBP22.86■■□□□ 1.25
CHMP1A-207ENST00000549328 EAF2Q96CJ1 260 aaPredicted RBP22.86■■□□□ 1.25
CHMP1A-207ENST00000549328 ZCCHC17Q9NP64 241 aaKnown RBP22.86■■□□□ 1.25
CHMP1A-207ENST00000549328 DDX4Q9NQI0 724 aaKnown RBP22.86■■□□□ 1.25
CHMP1A-207ENST00000549328 SNRKQ9NRH2 765 aa22.86■■□□□ 1.25
CHMP1A-207ENST00000549328 ZBTB40Q9NUA8 1239 aa22.86■■□□□ 1.25
CHMP1A-207ENST00000549328 ATRNL1Q5VV63 1379 aa22.86■■□□□ 1.25
CHMP1A-207ENST00000549328 FBXO46Q6PJ61 603 aaPredicted RBP22.85■■□□□ 1.25
CHMP1A-207ENST00000549328 SH3BP5LQ7L8J4 393 aa22.85■■□□□ 1.25
CHMP1A-207ENST00000549328 COG6Q9Y2V7 657 aa22.85■■□□□ 1.25
CHMP1A-207ENST00000549328 DDTLA6NHG4 134 aaPredicted RBP22.84■■□□□ 1.25
CHMP1A-207ENST00000549328 PHF20L1A8MW92 1017 aa22.84■■□□□ 1.25
CHMP1A-207ENST00000549328 CYP2E1P05181 493 aaPredicted RBP22.84■■□□□ 1.25
CHMP1A-207ENST00000549328 CCDC8Q9H0W5 538 aaPredicted RBP22.84■■□□□ 1.25
CHMP1A-207ENST00000549328 ZFYVE28Q9HCC9 887 aa22.84■■□□□ 1.25
CHMP1A-207ENST00000549328 EXOC6BQ9Y2D4 811 aa22.84■■□□□ 1.25
CHMP1A-207ENST00000549328 HMMRO75330 724 aa22.83■■□□□ 1.25
CHMP1A-207ENST00000549328 PICALMQ13492 652 aa22.83■■□□□ 1.25
CHMP1A-207ENST00000549328 TAF1CQ15572 869 aaPredicted RBP22.83■■□□□ 1.25
CHMP1A-207ENST00000549328 NAA16Q6N069 864 aaPredicted RBP22.83■■□□□ 1.25
CHMP1A-207ENST00000549328 FAM43AQ8N2R8 423 aa22.83■■□□□ 1.25
CHMP1A-207ENST00000549328 ERO1AQ96HE7 468 aa22.83■■□□□ 1.25
CHMP1A-207ENST00000549328 TLR7Q9NYK1 1049 aaKnown RBP22.83■■□□□ 1.25
CHMP1A-207ENST00000549328 HPS5Q9UPZ3 1129 aa22.83■■□□□ 1.25
CHMP1A-207ENST00000549328 KCNH4Q9UQ05 1017 aa22.83■■□□□ 1.25
CHMP1A-207ENST00000549328 ZAP70P43403 619 aa22.82■■□□□ 1.24
CHMP1A-207ENST00000549328 SP3Q02447 781 aa22.82■■□□□ 1.24
CHMP1A-207ENST00000549328 PDE3AQ14432 1141 aa22.82■■□□□ 1.24
CHMP1A-207ENST00000549328 NOL10Q9BSC4 688 aaKnown RBP22.82■■□□□ 1.24
CHMP1A-207ENST00000549328 DOCK2Q92608 1830 aa22.81■■□□□ 1.24
CHMP1A-207ENST00000549328 BTBD19C9JJ37 291 aa22.81■■□□□ 1.24
CHMP1A-207ENST00000549328 TBC1D12O60347 775 aa22.81■■□□□ 1.24
CHMP1A-207ENST00000549328 BAG3O95817 575 aa22.81■■□□□ 1.24
CHMP1A-207ENST00000549328 PLCG2P16885 1265 aa22.81■■□□□ 1.24
CHMP1A-207ENST00000549328 PPP4CP60510 307 aa22.81■■□□□ 1.24
CHMP1A-207ENST00000549328 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.81■■□□□ 1.24
CHMP1A-207ENST00000549328 COL2A1P02458 1487 aaPredicted RBP22.8■■□□□ 1.24
CHMP1A-207ENST00000549328 OTOP1Q7RTM1 612 aa22.8■■□□□ 1.24
CHMP1A-207ENST00000549328 TEX11Q8IYF3 940 aa22.8■■□□□ 1.24
CHMP1A-207ENST00000549328 SCYL3Q8IZE3 742 aa22.8■■□□□ 1.24
CHMP1A-207ENST00000549328 RHPN1Q8TCX5 695 aa22.8■■□□□ 1.24
CHMP1A-207ENST00000549328 TRIM17Q9Y577 477 aa22.8■■□□□ 1.24
CHMP1A-207ENST00000549328 CXCL11O14625 94 aa22.79■■□□□ 1.24
CHMP1A-207ENST00000549328 CTNND1O60716 968 aaKnown RBP22.79■■□□□ 1.24
CHMP1A-207ENST00000549328 AACSQ86V21 672 aa22.79■■□□□ 1.24
CHMP1A-207ENST00000549328 SIRT2Q8IXJ6 389 aa22.79■■□□□ 1.24
CHMP1A-207ENST00000549328 KIF1BPQ96EK5 621 aa22.79■■□□□ 1.24
CHMP1A-207ENST00000549328 OSBPL5Q9H0X9 879 aaPredicted RBP22.79■■□□□ 1.24
CHMP1A-207ENST00000549328 PICK1Q9NRD5 415 aa22.79■■□□□ 1.24
CHMP1A-207ENST00000549328 TLR2O60603 784 aa22.78■■□□□ 1.24
CHMP1A-207ENST00000549328 MLLT1Q03111 559 aaPredicted RBP22.78■■□□□ 1.24
CHMP1A-207ENST00000549328 TMED8Q6PL24 325 aaPredicted RBP22.78■■□□□ 1.24
CHMP1A-207ENST00000549328 ANKRD23Q86SG2 305 aa22.78■■□□□ 1.24
CHMP1A-207ENST00000549328 CD99L2Q8TCZ2 262 aa22.78■■□□□ 1.24
CHMP1A-207ENST00000549328 PIH1D3Q9NQM4 214 aaKnown RBP22.78■■□□□ 1.24
CHMP1A-207ENST00000549328 PTPRAP18433 802 aa22.77■■□□□ 1.24
CHMP1A-207ENST00000549328 ARHGEF6Q15052 776 aa22.77■■□□□ 1.24
CHMP1A-207ENST00000549328 CLASRPQ8N2M8 674 aaKnown RBP22.77■■□□□ 1.24
CHMP1A-207ENST00000549328 SH3RF3Q8TEJ3 882 aaPredicted RBP22.77■■□□□ 1.24
CHMP1A-207ENST00000549328 EFCC1Q9HA90 598 aa22.77■■□□□ 1.24
CHMP1A-207ENST00000549328 IL1RAPL2Q9NP60 686 aa22.77■■□□□ 1.24
CHMP1A-207ENST00000549328 AATFQ9NY61 560 aaKnown RBP eCLIP22.77■■□□□ 1.24
CHMP1A-207ENST00000549328 MAST2Q6P0Q8 1798 aa22.76■■□□□ 1.23
CHMP1A-207ENST00000549328 RAB11FIP3O75154 756 aa22.76■■□□□ 1.23
CHMP1A-207ENST00000549328 DHX36Q9H2U1 1008 aaKnown RBP22.76■■□□□ 1.23
CHMP1A-207ENST00000549328 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.76■■□□□ 1.238e-18■■■■■ 88.3
CHMP1A-207ENST00000549328 ZHX2Q9Y6X8 837 aa22.76■■□□□ 1.23
CHMP1A-207ENST00000549328 MOGSQ13724 837 aa22.75■■□□□ 1.23
CHMP1A-207ENST00000549328 ADGRA1Q86SQ6 560 aa22.75■■□□□ 1.23
CHMP1A-207ENST00000549328 HERC5Q9UII4 1024 aaKnown RBP22.75■■□□□ 1.23
CHMP1A-207ENST00000549328 AFG3L2Q9Y4W6 797 aa22.75■■□□□ 1.23
CHMP1A-207ENST00000549328 IDH1O75874 414 aaKnown RBP22.74■■□□□ 1.23
CHMP1A-207ENST00000549328 SLURP2P0DP57 97 aa22.74■■□□□ 1.23
CHMP1A-207ENST00000549328 C20orf194Q5TEA3 1177 aa22.74■■□□□ 1.23
CHMP1A-207ENST00000549328 CERS3Q8IU89 383 aa22.74■■□□□ 1.23
CHMP1A-207ENST00000549328 PI4KBQ9UBF8 816 aa22.74■■□□□ 1.23
CHMP1A-207ENST00000549328 PTPN22Q9Y2R2 807 aa22.74■■□□□ 1.23
CHMP1A-207ENST00000549328 MYO5AQ9Y4I1 1855 aaKnown RBP22.73■■□□□ 1.23
CHMP1A-207ENST00000549328 PDHXO00330 501 aa22.73■■□□□ 1.23
CHMP1A-207ENST00000549328 CYP7A1P22680 504 aa22.73■■□□□ 1.23
CHMP1A-207ENST00000549328 MAP3K12Q12852 859 aa22.73■■□□□ 1.23
CHMP1A-207ENST00000549328 FASTKD5Q7L8L6 764 aaKnown RBP22.73■■□□□ 1.23
CHMP1A-207ENST00000549328 A0A0G2JLL6 359 aaPredicted RBP22.72■■□□□ 1.23
CHMP1A-207ENST00000549328 SOX10P56693 466 aa22.72■■□□□ 1.23
CHMP1A-207ENST00000549328 C17orf99Q6UX52 265 aa22.72■■□□□ 1.23
CHMP1A-207ENST00000549328 PRRT2Q7Z6L0 340 aaPredicted RBP22.72■■□□□ 1.23
CHMP1A-207ENST00000549328 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.72■■□□□ 1.23
CHMP1A-207ENST00000549328 TGFBRAP1Q8WUH2 860 aa22.72■■□□□ 1.23
CHMP1A-207ENST00000549328 ANTXR1Q9H6X2 564 aa22.72■■□□□ 1.23
CHMP1A-207ENST00000549328 APBB1O00213 710 aa22.71■■□□□ 1.23
CHMP1A-207ENST00000549328 IFIT2P09913 472 aaKnown RBP22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms