RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 FAM196BA6NMK8 535 aa8.56□□□□□ -1.04
LIMA1-204ENST00000549064 MYCP01106 439 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-204ENST00000549064 PPP4CP60510 307 aa8.56□□□□□ -1.04
LIMA1-204ENST00000549064 NCOA4Q13772 614 aa8.56□□□□□ -1.04
LIMA1-204ENST00000549064 NBPF9Q3BBW0 867 aa8.56□□□□□ -1.04
LIMA1-204ENST00000549064 SLFNL1Q499Z3 407 aa8.56□□□□□ -1.04
LIMA1-204ENST00000549064 SPRYD7Q5W111 196 aa8.56□□□□□ -1.04
LIMA1-204ENST00000549064 TMC4Q7Z404 712 aa8.56□□□□□ -1.04
LIMA1-204ENST00000549064 TBC1D16Q8TBP0 767 aa8.56□□□□□ -1.04
LIMA1-204ENST00000549064 EYA3Q99504 573 aa8.56□□□□□ -1.04
LIMA1-204ENST00000549064 MYOZ2Q9NPC6 264 aa8.56□□□□□ -1.04
LIMA1-204ENST00000549064 CEP126Q9P2H0 1117 aa8.56□□□□□ -1.04
LIMA1-204ENST00000549064 TRMT112Q9UI30 125 aaKnown RBP8.56□□□□□ -1.04
LIMA1-204ENST00000549064 PCDHB9Q9Y5E1 797 aa8.56□□□□□ -1.04
LIMA1-204ENST00000549064 PCDHB3Q9Y5E6 796 aa8.56□□□□□ -1.04
LIMA1-204ENST00000549064 ZSWIM8A7E2V4 1837 aa8.56□□□□□ -1.04
LIMA1-204ENST00000549064 SH3TC1Q8TE82 1336 aa8.55□□□□□ -1.04
LIMA1-204ENST00000549064 TK2O00142 265 aa8.55□□□□□ -1.04
LIMA1-204ENST00000549064 IGF2BP3O00425 579 aaKnown RBP eCLIP8.55□□□□□ -1.04
LIMA1-204ENST00000549064 U2AF1L5P0DN76 240 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-204ENST00000549064 RASA1P20936 1047 aa8.55□□□□□ -1.04
LIMA1-204ENST00000549064 BCAMP50895 628 aa8.55□□□□□ -1.04
LIMA1-204ENST00000549064 U2AF1Q01081 240 aaKnown RBP eCLIP8.55□□□□□ -1.04
LIMA1-204ENST00000549064 TCIRG1Q13488 830 aa8.55□□□□□ -1.04
LIMA1-204ENST00000549064 RNF135Q8IUD6 432 aa8.55□□□□□ -1.04
LIMA1-204ENST00000549064 CCER1Q8TC90 406 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-204ENST00000549064 ERO1AQ96HE7 468 aa8.55□□□□□ -1.04
LIMA1-204ENST00000549064 GMLQ99445 158 aa8.55□□□□□ -1.04
LIMA1-204ENST00000549064 OCSTAMPQ9BR26 566 aa8.55□□□□□ -1.04
LIMA1-204ENST00000549064 UNC80Q8N2C7 3258 aa8.55□□□□□ -1.04
LIMA1-204ENST00000549064 HTATSF1O43719 755 aaKnown RBP8.54□□□□□ -1.04
LIMA1-204ENST00000549064 ST18O60284 1047 aa8.54□□□□□ -1.04
LIMA1-204ENST00000549064 NR1I2O75469 434 aa8.54□□□□□ -1.04
LIMA1-204ENST00000549064 ALDH1A1P00352 501 aa8.54□□□□□ -1.04
LIMA1-204ENST00000549064 EIF2S2P20042 333 aaKnown RBP8.54□□□□□ -1.04
LIMA1-204ENST00000549064 PTK2Q05397 1052 aa8.54□□□□□ -1.04
LIMA1-204ENST00000549064 KCNH2Q12809 1159 aa8.54□□□□□ -1.04
LIMA1-204ENST00000549064 AIMP1Q12904 312 aaKnown RBP8.54□□□□□ -1.04
LIMA1-204ENST00000549064 PTK7Q13308 1070 aa8.54□□□□□ -1.04
LIMA1-204ENST00000549064 ADGRD1Q6QNK2 874 aa8.54□□□□□ -1.04
LIMA1-204ENST00000549064 AGBL3Q8NEM8 1001 aa8.54□□□□□ -1.04
LIMA1-204ENST00000549064 ANKK1Q8NFD2 765 aa8.54□□□□□ -1.04
LIMA1-204ENST00000549064 ZNF333Q96JL9 665 aa8.54□□□□□ -1.04
LIMA1-204ENST00000549064 MXD3Q9BW11 206 aa8.54□□□□□ -1.04
LIMA1-204ENST00000549064 ZC3H12CQ9C0D7 883 aaKnown RBP8.54□□□□□ -1.04
LIMA1-204ENST00000549064 EFCC1Q9HA90 598 aa8.54□□□□□ -1.04
LIMA1-204ENST00000549064 ANGEL1Q9UNK9 670 aaKnown RBP8.54□□□□□ -1.04
LIMA1-204ENST00000549064 ERBB4Q15303 1308 aa8.54□□□□□ -1.04
LIMA1-204ENST00000549064 UFL1O94874 794 aa8.53□□□□□ -1.04
LIMA1-204ENST00000549064 SASH1O94885 1247 aa8.53□□□□□ -1.04
LIMA1-204ENST00000549064 CCNYL3P0C7X3 344 aa8.53□□□□□ -1.04
LIMA1-204ENST00000549064 NF2P35240 595 aa8.53□□□□□ -1.04
LIMA1-204ENST00000549064 CRHR2Q13324 411 aa8.53□□□□□ -1.04
LIMA1-204ENST00000549064 SLC4A8Q2Y0W8 1093 aa8.53□□□□□ -1.04
LIMA1-204ENST00000549064 COPS6Q7L5N1 327 aa8.53□□□□□ -1.04
LIMA1-204ENST00000549064 ARMC9Q7Z3E5 817 aa8.53□□□□□ -1.04
LIMA1-204ENST00000549064 PLPP7Q8NBV4 271 aa8.53□□□□□ -1.04
LIMA1-204ENST00000549064 CLMNQ96JQ2 1002 aa8.53□□□□□ -1.04
LIMA1-204ENST00000549064 PTCH2Q9Y6C5 1203 aa8.53□□□□□ -1.04
LIMA1-204ENST00000549064 MANSC4A6NHS7 340 aaPredicted RBP8.52□□□□□ -1.05
LIMA1-204ENST00000549064 WTIPA6NIX2 430 aaPredicted RBP8.52□□□□□ -1.05
LIMA1-204ENST00000549064 SOX1O00570 391 aaPredicted RBP8.52□□□□□ -1.05
LIMA1-204ENST00000549064 WNT10BO00744 389 aa8.52□□□□□ -1.05
LIMA1-204ENST00000549064 SF3B3Q15393 1217 aaKnown RBP8.52□□□□□ -1.05
LIMA1-204ENST00000549064 HSP90AB3PQ58FF7 597 aa8.52□□□□□ -1.05
LIMA1-204ENST00000549064 LDLRAD1Q5T700 205 aa8.52□□□□□ -1.05
LIMA1-204ENST00000549064 PHTF2Q8N3S3 785 aa8.52□□□□□ -1.05
LIMA1-204ENST00000549064 FAM200AQ8TCP9 573 aa8.52□□□□□ -1.05
LIMA1-204ENST00000549064 PNISRQ8TF01 805 aaKnown RBP8.52□□□□□ -1.05
LIMA1-204ENST00000549064 XAGE3Q8WTP9 111 aa8.52□□□□□ -1.05
LIMA1-204ENST00000549064 FAM89AQ96GI7 184 aa8.52□□□□□ -1.05
LIMA1-204ENST00000549064 WNK4Q96J92 1243 aa8.52□□□□□ -1.05
LIMA1-204ENST00000549064 NUDT12Q9BQG2 462 aa8.52□□□□□ -1.05
LIMA1-204ENST00000549064 PRDM9Q9NQV7 894 aa8.52□□□□□ -1.05
LIMA1-204ENST00000549064 SPEF2Q9C093 1822 aa8.52□□□□□ -1.05
LIMA1-204ENST00000549064 OTOFQ9HC10 1997 aa8.52□□□□□ -1.05
LIMA1-204ENST00000549064 SOWAHBA6NEL2 793 aa8.51□□□□□ -1.05
LIMA1-204ENST00000549064 GOLGA8CPA6NN73 597 aa8.51□□□□□ -1.05
LIMA1-204ENST00000549064 ATP5J2-PTCD1G3V325 749 aa8.51□□□□□ -1.05
LIMA1-204ENST00000549064 RPS8P62241 208 aaKnown RBP8.51□□□□□ -1.05
LIMA1-204ENST00000549064 SP3Q02447 781 aa8.51□□□□□ -1.05
LIMA1-204ENST00000549064 SLC9C1Q4G0N8 1177 aa8.51□□□□□ -1.05
LIMA1-204ENST00000549064 PDXDC2PQ6P474 469 aa8.51□□□□□ -1.05
LIMA1-204ENST00000549064 ANKMY2Q8IV38 441 aa8.51□□□□□ -1.05
LIMA1-204ENST00000549064 FAM160A2Q8N612 972 aaPredicted RBP8.51□□□□□ -1.05
LIMA1-204ENST00000549064 DPF3Q92784 378 aa8.51□□□□□ -1.05
LIMA1-204ENST00000549064 CFAP53Q96M91 514 aa8.51□□□□□ -1.05
LIMA1-204ENST00000549064 SEC31BQ9NQW1 1179 aa8.51□□□□□ -1.05
LIMA1-204ENST00000549064 EVA1BQ9NVM1 165 aa8.51□□□□□ -1.05
LIMA1-204ENST00000549064 ANKIB1Q9P2G1 1089 aa8.51□□□□□ -1.05
LIMA1-204ENST00000549064 GGA1Q9UJY5 639 aa8.51□□□□□ -1.05
LIMA1-204ENST00000549064 NUDCQ9Y266 331 aa8.51□□□□□ -1.05
LIMA1-204ENST00000549064 GPSM3Q9Y4H4 160 aa8.51□□□□□ -1.05
LIMA1-204ENST00000549064 LAMA3Q16787 3333 aa8.51□□□□□ -1.05
LIMA1-204ENST00000549064 SSC5DA1L4H1 1573 aa8.51□□□□□ -1.05
LIMA1-204ENST00000549064 POTEB3A0JP26 581 aa8.5□□□□□ -1.05
LIMA1-204ENST00000549064 HRO43593 1189 aa8.5□□□□□ -1.05
LIMA1-204ENST00000549064 DXOO77932 396 aaKnown RBP8.5□□□□□ -1.05
LIMA1-204ENST00000549064 ARID4AP29374 1257 aaPredicted RBP8.5□□□□□ -1.05
LIMA1-204ENST00000549064 SCNN1AP37088 669 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms