RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 ZNF500O60304 480 aaPredicted RBP17.85■□□□□ 0.45
CUX1-211ENST00000546411 CYP2E1P05181 493 aaPredicted RBP17.85■□□□□ 0.45
CUX1-211ENST00000546411 ZNF397Q8NF99 534 aaPredicted RBP17.85■□□□□ 0.45
CUX1-211ENST00000546411 CALML4Q96GE6 196 aa17.85■□□□□ 0.45
CUX1-211ENST00000546411 ZMYND15Q9H091 742 aa17.85■□□□□ 0.45
CUX1-211ENST00000546411 ASIC1P78348 528 aa17.84■□□□□ 0.45
CUX1-211ENST00000546411 BRINP3Q76B58 766 aa17.84■□□□□ 0.45
CUX1-211ENST00000546411 FRMPD1Q5SYB0 1578 aa17.84■□□□□ 0.45
CUX1-211ENST00000546411 VWDEQ8N2E2 1590 aa17.84■□□□□ 0.45
CUX1-211ENST00000546411 SLU7O95391 586 aaKnown RBP17.84■□□□□ 0.45
CUX1-211ENST00000546411 C11orf57Q6ZUT1 292 aaPredicted RBP17.84■□□□□ 0.45
CUX1-211ENST00000546411 ZNF654Q8IZM8 581 aa17.84■□□□□ 0.45
CUX1-211ENST00000546411 DRC1Q96MC2 740 aa17.84■□□□□ 0.45
CUX1-211ENST00000546411 DENND2AQ9ULE3 1009 aa17.84■□□□□ 0.45
CUX1-211ENST00000546411 MROH5Q6ZUA9 1318 aa17.84■□□□□ 0.45
CUX1-211ENST00000546411 ZNF335Q9H4Z2 1342 aaPredicted RBP17.84■□□□□ 0.45
CUX1-211ENST00000546411 JAKMIP3Q5VZ66 844 aa17.84■□□□□ 0.45
CUX1-211ENST00000546411 PTPRUQ92729 1446 aa17.84■□□□□ 0.45
CUX1-211ENST00000546411 MATR3P43243 847 aaKnown RBP eCLIP17.83■□□□□ 0.455e-7■■■■□ 22.9
CUX1-211ENST00000546411 VPS16Q9H269 839 aa17.83■□□□□ 0.45
CUX1-211ENST00000546411 LETM2Q2VYF4 491 aa17.83■□□□□ 0.45
CUX1-211ENST00000546411 RAB34Q9BZG1 259 aa17.83■□□□□ 0.45
CUX1-211ENST00000546411 CCNL1Q9UK58 526 aaPredicted RBP17.83■□□□□ 0.45
CUX1-211ENST00000546411 RTL9Q8NET4 1388 aa17.83■□□□□ 0.44
CUX1-211ENST00000546411 LMTK3Q96Q04 1460 aa17.83■□□□□ 0.44
CUX1-211ENST00000546411 LOC102724428A0A0B4J2F2 783 aa17.83■□□□□ 0.44
CUX1-211ENST00000546411 SIK1P57059 783 aa17.83■□□□□ 0.44
CUX1-211ENST00000546411 TCERG1LQ5VWI1 586 aa17.83■□□□□ 0.44
CUX1-211ENST00000546411 CDC42BPGQ6DT37 1551 aa17.83■□□□□ 0.44
CUX1-211ENST00000546411 CHRNDQ07001 517 aa17.83■□□□□ 0.44
CUX1-211ENST00000546411 APOA5Q6Q788 366 aa17.83■□□□□ 0.44
CUX1-211ENST00000546411 COL3A1P02461 1466 aaPredicted RBP17.82■□□□□ 0.44
CUX1-211ENST00000546411 NRKQ7Z2Y5 1582 aa17.82■□□□□ 0.44
CUX1-211ENST00000546411 TNNI2P48788 182 aa17.82■□□□□ 0.44
CUX1-211ENST00000546411 PPARAQ07869 468 aa17.82■□□□□ 0.44
CUX1-211ENST00000546411 IQUBQ8NA54 791 aa17.82■□□□□ 0.44
CUX1-211ENST00000546411 MYRIPQ8NFW9 859 aa17.82■□□□□ 0.44
CUX1-211ENST00000546411 TTLL11Q8NHH1 800 aa17.82■□□□□ 0.44
CUX1-211ENST00000546411 EEF2KMTQ96G04 330 aa17.82■□□□□ 0.44
CUX1-211ENST00000546411 EXOC1Q9NV70 894 aa17.82■□□□□ 0.44
CUX1-211ENST00000546411 SERTAD1Q9UHV2 236 aa17.82■□□□□ 0.44
CUX1-211ENST00000546411 CARMIL3Q8ND23 1372 aa17.82■□□□□ 0.44
CUX1-211ENST00000546411 TOM1O60784 492 aa17.82■□□□□ 0.44
CUX1-211ENST00000546411 BMP15O95972 392 aa17.82■□□□□ 0.44
CUX1-211ENST00000546411 CRKLP46109 303 aaKnown RBP17.82■□□□□ 0.44
CUX1-211ENST00000546411 SCARF1Q14162 830 aa17.82■□□□□ 0.44
CUX1-211ENST00000546411 DPCR1Q3MIW9 517 aa17.82■□□□□ 0.44
CUX1-211ENST00000546411 AEBP2Q6ZN18 517 aaPredicted RBP17.82■□□□□ 0.44
CUX1-211ENST00000546411 CCDC148Q8NFR7 591 aa17.82■□□□□ 0.44
CUX1-211ENST00000546411 NYXQ9GZU5 481 aa17.82■□□□□ 0.44
CUX1-211ENST00000546411 U2AF2P26368 475 aaKnown RBP eCLIP17.81■□□□□ 0.441e-7■■■■■ 27.9
CUX1-211ENST00000546411 TNKSO95271 1327 aa17.81■□□□□ 0.44
CUX1-211ENST00000546411 CALM1P0DP23 149 aa17.81■□□□□ 0.44
CUX1-211ENST00000546411 CALM2P0DP24 149 aa17.81■□□□□ 0.44
CUX1-211ENST00000546411 CALM3P0DP25 149 aa17.81■□□□□ 0.44
CUX1-211ENST00000546411 MCAMP43121 646 aa17.81■□□□□ 0.44
CUX1-211ENST00000546411 RPS8P62241 208 aaKnown RBP17.81■□□□□ 0.44
CUX1-211ENST00000546411 CCDC40Q4G0X9 1142 aa17.81■□□□□ 0.44
CUX1-211ENST00000546411 SLF2Q8IX21 1173 aa17.81■□□□□ 0.44
CUX1-211ENST00000546411 CUTAO60888 179 aa17.81■□□□□ 0.44
CUX1-211ENST00000546411 NLRP12P59046 1061 aa17.81■□□□□ 0.44
CUX1-211ENST00000546411 RESTQ13127 1097 aa17.81■□□□□ 0.44
CUX1-211ENST00000546411 DTHD1Q6ZMT9 781 aa17.81■□□□□ 0.44
CUX1-211ENST00000546411 MAPKAPK5Q8IW41 473 aa17.81■□□□□ 0.44
CUX1-211ENST00000546411 PIH1D3Q9NQM4 214 aaKnown RBP17.81■□□□□ 0.44
CUX1-211ENST00000546411 PUF60Q9UHX1 559 aaKnown RBP17.81■□□□□ 0.44
CUX1-211ENST00000546411 CYP2D7A0A087X1C5 515 aa17.8■□□□□ 0.44
CUX1-211ENST00000546411 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.8■□□□□ 0.444e-6■■■■□ 23.2
CUX1-211ENST00000546411 BLZF1Q9H2G9 400 aa17.8■□□□□ 0.44
CUX1-211ENST00000546411 MAP2P11137 1827 aaKnown RBP17.8■□□□□ 0.44
CUX1-211ENST00000546411 SPATA31A3Q5VYP0 1347 aa17.8■□□□□ 0.44
CUX1-211ENST00000546411 CIAO1O76071 339 aa17.8■□□□□ 0.44
CUX1-211ENST00000546411 FANCBQ8NB91 859 aa17.8■□□□□ 0.44
CUX1-211ENST00000546411 BAG1Q99933 345 aaPredicted RBP17.8■□□□□ 0.44
CUX1-211ENST00000546411 GPR108Q9NPR9 543 aa17.8■□□□□ 0.44
CUX1-211ENST00000546411 MYO1BO43795 1136 aa17.8■□□□□ 0.44
CUX1-211ENST00000546411 ZNF804AQ7Z570 1209 aa17.8■□□□□ 0.44
CUX1-211ENST00000546411 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.8■□□□□ 0.44
CUX1-211ENST00000546411 NOSTRINQ8IVI9 506 aa17.8■□□□□ 0.44
CUX1-211ENST00000546411 PGBD1Q96JS3 809 aa17.8■□□□□ 0.44
CUX1-211ENST00000546411 ZC3H12CQ9C0D7 883 aaKnown RBP17.8■□□□□ 0.44
CUX1-211ENST00000546411 JADE2Q9NQC1 790 aa17.8■□□□□ 0.44
CUX1-211ENST00000546411 TMOD2Q9NZR1 351 aa17.8■□□□□ 0.44
CUX1-211ENST00000546411 UFL1O94874 794 aa17.8■□□□□ 0.44
CUX1-211ENST00000546411 CALML3P27482 149 aa17.8■□□□□ 0.44
CUX1-211ENST00000546411 GNAQP50148 359 aa17.8■□□□□ 0.44
CUX1-211ENST00000546411 GSTO1P78417 241 aa17.8■□□□□ 0.44
CUX1-211ENST00000546411 ST5P78524 1137 aa17.8■□□□□ 0.44
CUX1-211ENST00000546411 TFAP4Q01664 338 aa17.8■□□□□ 0.44
CUX1-211ENST00000546411 TEX11Q8IYF3 940 aa17.8■□□□□ 0.44
CUX1-211ENST00000546411 CNBD1Q8NA66 436 aa17.8■□□□□ 0.44
CUX1-211ENST00000546411 LUC7LQ9NQ29 371 aaKnown RBP17.8■□□□□ 0.44
CUX1-211ENST00000546411 CCDC66A2RUB6 948 aa17.79■□□□□ 0.44
CUX1-211ENST00000546411 PSMA7O14818 248 aa17.79■□□□□ 0.44
CUX1-211ENST00000546411 COBLO75128 1261 aa17.79■□□□□ 0.44
CUX1-211ENST00000546411 MCM6Q14566 821 aa17.79■□□□□ 0.44
CUX1-211ENST00000546411 POSTNQ15063 836 aa17.79■□□□□ 0.44
CUX1-211ENST00000546411 ADGRL3Q9HAR2 1447 aa17.79■□□□□ 0.44
CUX1-211ENST00000546411 AKR1B10O60218 316 aa17.79■□□□□ 0.44
CUX1-211ENST00000546411 UBXN1Q04323 297 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms