RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 MYH8P13535 1937 aa19.08■□□□□ 0.64
PRPF40A-212ENST00000545856 WNT10BO00744 389 aa19.07■□□□□ 0.64
PRPF40A-212ENST00000545856 FOXP2O15409 715 aa19.07■□□□□ 0.64
PRPF40A-212ENST00000545856 WDHD1O75717 1129 aaPredicted RBP19.07■□□□□ 0.64
PRPF40A-212ENST00000545856 FGAP02671 866 aa19.07■□□□□ 0.64
PRPF40A-212ENST00000545856 PTH1RQ03431 593 aa19.07■□□□□ 0.64
PRPF40A-212ENST00000545856 KIF4BQ2VIQ3 1234 aa19.07■□□□□ 0.64
PRPF40A-212ENST00000545856 VPS53Q5VIR6 699 aa19.07■□□□□ 0.64
PRPF40A-212ENST00000545856 HACL1Q9UJ83 578 aa19.07■□□□□ 0.64
PRPF40A-212ENST00000545856 ROBO3Q96MS0 1386 aa19.07■□□□□ 0.64
PRPF40A-212ENST00000545856 FLT1P17948 1338 aa19.07■□□□□ 0.64
PRPF40A-212ENST00000545856 DDNO94850 711 aaPredicted RBP19.06■□□□□ 0.64
PRPF40A-212ENST00000545856 SLC3A2P08195 630 aaKnown RBP19.06■□□□□ 0.64
PRPF40A-212ENST00000545856 TNNI2P48788 182 aa19.06■□□□□ 0.64
PRPF40A-212ENST00000545856 USP50Q70EL3 339 aaPredicted RBP19.06■□□□□ 0.64
PRPF40A-212ENST00000545856 ZC3H15Q8WU90 426 aaKnown RBP19.06■□□□□ 0.64
PRPF40A-212ENST00000545856 PRMT6Q96LA8 375 aaPredicted RBP19.06■□□□□ 0.64
PRPF40A-212ENST00000545856 EPB41L4AQ9HCS5 686 aaPredicted RBP19.06■□□□□ 0.64
PRPF40A-212ENST00000545856 TTC6Q86TZ1 520 aa19.06■□□□□ 0.64
PRPF40A-212ENST00000545856 PNMA8AQ86V59 439 aaPredicted RBP19.06■□□□□ 0.64
PRPF40A-212ENST00000545856 APOBEC3FQ8IUX4 373 aaKnown RBP19.06■□□□□ 0.64
PRPF40A-212ENST00000545856 RNF41Q9H4P4 317 aaPredicted RBP19.06■□□□□ 0.64
PRPF40A-212ENST00000545856 ZNF287Q9HBT7 754 aa19.06■□□□□ 0.64
PRPF40A-212ENST00000545856 ZNF213O14771 459 aa19.05■□□□□ 0.64
PRPF40A-212ENST00000545856 CREB3L3Q68CJ9 461 aa19.05■□□□□ 0.64
PRPF40A-212ENST00000545856 TGFBRAP1Q8WUH2 860 aa19.05■□□□□ 0.64
PRPF40A-212ENST00000545856 SDR42E1Q8WUS8 393 aa19.05■□□□□ 0.64
PRPF40A-212ENST00000545856 OSBPL5Q9H0X9 879 aaPredicted RBP19.05■□□□□ 0.64
PRPF40A-212ENST00000545856 ZNF70Q9UC06 446 aaPredicted RBP19.05■□□□□ 0.64
PRPF40A-212ENST00000545856 PPP2R3BQ9Y5P8 575 aa19.05■□□□□ 0.64
PRPF40A-212ENST00000545856 PRKAB2O43741 272 aa19.04■□□□□ 0.64
PRPF40A-212ENST00000545856 FAM151AQ8WW52 585 aa19.04■□□□□ 0.64
PRPF40A-212ENST00000545856 TM6SF1Q9BZW5 370 aa19.04■□□□□ 0.64
PRPF40A-212ENST00000545856 EHD4Q9H223 541 aa19.04■□□□□ 0.64
PRPF40A-212ENST00000545856 CNNM2Q9H8M5 875 aa19.04■□□□□ 0.64
PRPF40A-212ENST00000545856 SLC27A2O14975 620 aa19.03■□□□□ 0.64
PRPF40A-212ENST00000545856 HLA-DOAP06340 250 aa19.03■□□□□ 0.64
PRPF40A-212ENST00000545856 HMGB1P09429 215 aaKnown RBP19.03■□□□□ 0.64
PRPF40A-212ENST00000545856 PSMA5P28066 241 aa19.03■□□□□ 0.64
PRPF40A-212ENST00000545856 HOOK2Q96ED9 719 aa19.03■□□□□ 0.64
PRPF40A-212ENST00000545856 TDRD3Q9H7E2 651 aaKnown RBP19.03■□□□□ 0.64
PRPF40A-212ENST00000545856 MCM9Q9NXL9 1143 aa19.03■□□□□ 0.64
PRPF40A-212ENST00000545856 CYP21A2P08686 494 aa19.02■□□□□ 0.64
PRPF40A-212ENST00000545856 C12orf60Q5U649 245 aa19.02■□□□□ 0.64
PRPF40A-212ENST00000545856 FGRP09769 529 aa19.01■□□□□ 0.63
PRPF40A-212ENST00000545856 EPHX2P34913 555 aa19.01■□□□□ 0.63
PRPF40A-212ENST00000545856 EPS15P42566 896 aa19.01■□□□□ 0.63
PRPF40A-212ENST00000545856 PPARAQ07869 468 aa19.01■□□□□ 0.63
PRPF40A-212ENST00000545856 TBC1D10BQ4KMP7 808 aaPredicted RBP19.01■□□□□ 0.63
PRPF40A-212ENST00000545856 CTR9Q6PD62 1173 aa19.01■□□□□ 0.63
PRPF40A-212ENST00000545856 SAMD7Q7Z3H4 446 aa19.01■□□□□ 0.63
PRPF40A-212ENST00000545856 MAPKAPK5Q8IW41 473 aa19.01■□□□□ 0.63
PRPF40A-212ENST00000545856 MTA3Q9BTC8 594 aa19.01■□□□□ 0.63
PRPF40A-212ENST00000545856 SWAP70Q9UH65 585 aa19.01■□□□□ 0.63
PRPF40A-212ENST00000545856 SIPA1L1O43166 1804 aa19■□□□□ 0.63
PRPF40A-212ENST00000545856 USP17L12C9JPN9 530 aa19■□□□□ 0.63
PRPF40A-212ENST00000545856 USP17L21D6R901 530 aa19■□□□□ 0.63
PRPF40A-212ENST00000545856 POLR3DP05423 398 aaPredicted RBP19■□□□□ 0.63
PRPF40A-212ENST00000545856 PDE4BQ07343 736 aa19■□□□□ 0.63
PRPF40A-212ENST00000545856 TRDNQ13061 729 aa19■□□□□ 0.63
PRPF40A-212ENST00000545856 NBPF9Q3BBW0 867 aa19■□□□□ 0.63
PRPF40A-212ENST00000545856 STAG1Q8WVM7 1258 aa19■□□□□ 0.63
PRPF40A-212ENST00000545856 PI4KBQ9UBF8 816 aa19■□□□□ 0.63
PRPF40A-212ENST00000545856 FAM198AQ9UFP1 575 aa19■□□□□ 0.63
PRPF40A-212ENST00000545856 PGAP2Q9UHJ9 254 aa19■□□□□ 0.63
PRPF40A-212ENST00000545856 WDR19Q8NEZ3 1342 aa19■□□□□ 0.63
PRPF40A-212ENST00000545856 POLR2AP24928 1970 aaKnown RBP18.99■□□□□ 0.63
PRPF40A-212ENST00000545856 VEGFAP15692 232 aaPredicted RBP18.99■□□□□ 0.63
PRPF40A-212ENST00000545856 NFIAQ12857 509 aa18.99■□□□□ 0.63
PRPF40A-212ENST00000545856 RABEP1Q15276 862 aa18.99■□□□□ 0.63
PRPF40A-212ENST00000545856 AKNAD1Q5T1N1 836 aa18.99■□□□□ 0.63
PRPF40A-212ENST00000545856 METTL16Q86W50 562 aaKnown RBP18.99■□□□□ 0.63
PRPF40A-212ENST00000545856 FOXP4Q8IVH2 680 aaPredicted RBP18.99■□□□□ 0.63
PRPF40A-212ENST00000545856 KRT23Q9C075 422 aa18.99■□□□□ 0.63
PRPF40A-212ENST00000545856 TAF1DQ9H5J8 278 aaPredicted RBP18.99■□□□□ 0.63
PRPF40A-212ENST00000545856 DDX4Q9NQI0 724 aaKnown RBP18.99■□□□□ 0.63
PRPF40A-212ENST00000545856 HERC5Q9UII4 1024 aaKnown RBP18.99■□□□□ 0.63
PRPF40A-212ENST00000545856 SNX14Q9Y5W7 946 aa18.99■□□□□ 0.63
PRPF40A-212ENST00000545856 ORC4O43929 436 aa18.98■□□□□ 0.63
PRPF40A-212ENST00000545856 PICALMQ13492 652 aa18.98■□□□□ 0.63
PRPF40A-212ENST00000545856 MFSD6Q6ZSS7 791 aa18.98■□□□□ 0.63
PRPF40A-212ENST00000545856 TRPM4Q8TD43 1214 aa18.98■□□□□ 0.63
PRPF40A-212ENST00000545856 VEZTQ9HBM0 779 aa18.98■□□□□ 0.63
PRPF40A-212ENST00000545856 SERPINB13Q9UIV8 391 aa18.98■□□□□ 0.63
PRPF40A-212ENST00000545856 PCDHAC2Q9Y5I4 1007 aa18.98■□□□□ 0.63
PRPF40A-212ENST00000545856 SHTN1A0MZ66 631 aa18.97■□□□□ 0.63
PRPF40A-212ENST00000545856 TBC1D12O60347 775 aa18.97■□□□□ 0.63
PRPF40A-212ENST00000545856 NCOA7Q8NI08 942 aa18.97■□□□□ 0.63
PRPF40A-212ENST00000545856 CNTNAP1P78357 1384 aa18.97■□□□□ 0.63
PRPF40A-212ENST00000545856 CLRN2A0PK11 232 aa18.96■□□□□ 0.63
PRPF40A-212ENST00000545856 MINDY4BA8MYZ0 360 aa18.96■□□□□ 0.63
PRPF40A-212ENST00000545856 E7EWF7 191 aa18.96■□□□□ 0.63
PRPF40A-212ENST00000545856 EGFRP00533 1210 aa18.96■□□□□ 0.63
PRPF40A-212ENST00000545856 RBM26Q5T8P6 1007 aaKnown RBP18.96■□□□□ 0.63
PRPF40A-212ENST00000545856 C16orf86Q6ZW13 317 aa18.96■□□□□ 0.63
PRPF40A-212ENST00000545856 RALYLQ86SE5 291 aaKnown RBP18.96■□□□□ 0.63
PRPF40A-212ENST00000545856 RASEFQ8IZ41 740 aa18.96■□□□□ 0.63
PRPF40A-212ENST00000545856 DCPSQ96C86 337 aaKnown RBP18.96■□□□□ 0.63
PRPF40A-212ENST00000545856 HIRAP54198 1017 aaPredicted RBP18.95■□□□□ 0.62
PRPF40A-212ENST00000545856 GABPAQ06546 454 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms