RNA–Protein interactions for RNA: ENST00000544501.1

YBX3-214, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 181 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-214ENST00000544501 UTP4Q969X6 686 aaKnown RBP3.91□□□□□ -1.78
YBX3-214ENST00000544501 TP53INP1Q96A56 240 aa3.91□□□□□ -1.78
YBX3-214ENST00000544501 FANCD2OSQ96PS1 177 aa3.91□□□□□ -1.78
YBX3-214ENST00000544501 YIPF2Q9BWQ6 316 aa3.91□□□□□ -1.78
YBX3-214ENST00000544501 COPRSQ9NQ92 184 aa3.91□□□□□ -1.78
YBX3-214ENST00000544501 TPSG1Q9NRR2 321 aa3.91□□□□□ -1.78
YBX3-214ENST00000544501 DDX41Q9UJV9 622 aaKnown RBP3.91□□□□□ -1.78
YBX3-214ENST00000544501 PPP1R9AQ9ULJ8 1098 aa3.91□□□□□ -1.78
YBX3-214ENST00000544501 PCDHA4Q9UN74 947 aa3.91□□□□□ -1.78
YBX3-214ENST00000544501 PCDHB5Q9Y5E4 795 aa3.91□□□□□ -1.78
YBX3-214ENST00000544501 ACTL7BQ9Y614 415 aa3.91□□□□□ -1.78
YBX3-214ENST00000544501 FAM221AA4D161 298 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 MINDY4BA8MYZ0 360 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 FANCGO15287 622 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 GREM1O60565 184 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 CILPO75339 1184 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 BMP3P12645 472 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 TCF3P15923 654 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 GARTP22102 1010 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 ASPAP45381 313 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 USP11P51784 963 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 RPL6Q02878 288 aaKnown RBP3.9□□□□□ -1.79
YBX3-214ENST00000544501 PTPN11Q06124 597 aaPredicted RBP3.9□□□□□ -1.79
YBX3-214ENST00000544501 NKAPLQ5M9Q1 402 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 SNAP47Q5SQN1 464 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 PRR23CQ6ZRP0 262 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 CYFIP1Q7L576 1253 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 USP48Q86UV5 1035 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 CLEC10AQ8IUN9 316 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 ZNF654Q8IZM8 581 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 RNF214Q8ND24 703 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 FAM83CQ9BQN1 747 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 ACSS3Q9H6R3 686 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 DISC1Q9NRI5 854 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 IGSF5Q9NSI5 407 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 FAM105AQ9NUU6 356 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 AP4E1Q9UPM8 1137 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 RAXQ9Y2V3 346 aa3.9□□□□□ -1.79
YBX3-214ENST00000544501 SUPT16HQ9Y5B9 1047 aaKnown RBP3.9□□□□□ -1.79
YBX3-214ENST00000544501 GFRA2O00451 464 aa3.89□□□□□ -1.79
YBX3-214ENST00000544501 BPNT1O95861 308 aa3.89□□□□□ -1.79
YBX3-214ENST00000544501 MAP4P27816 1152 aaKnown RBP3.89□□□□□ -1.79
YBX3-214ENST00000544501 SEPT6Q14141 434 aa3.89□□□□□ -1.79
YBX3-214ENST00000544501 MPP2Q14168 576 aa3.89□□□□□ -1.79
YBX3-214ENST00000544501 DOC2BQ14184 412 aa3.89□□□□□ -1.79
YBX3-214ENST00000544501 MAP7Q14244 749 aa3.89□□□□□ -1.79
YBX3-214ENST00000544501 INPP5AQ14642 412 aa3.89□□□□□ -1.79
YBX3-214ENST00000544501 CDPF1Q6NVV7 123 aa3.89□□□□□ -1.79
YBX3-214ENST00000544501 FBXL19Q6PCT2 694 aa3.89□□□□□ -1.79
YBX3-214ENST00000544501 LRFN4Q6PJG9 635 aa3.89□□□□□ -1.79
YBX3-214ENST00000544501 FAM196AQ6ZSG2 479 aa3.89□□□□□ -1.79
YBX3-214ENST00000544501 NT5DC4Q86YG4 428 aa3.89□□□□□ -1.79
YBX3-214ENST00000544501 KIAA0825Q8IV33 1275 aa3.89□□□□□ -1.79
YBX3-214ENST00000544501 GOLM1Q8NBJ4 401 aa3.89□□□□□ -1.79
YBX3-214ENST00000544501 ZNF296Q8WUU4 475 aaPredicted RBP3.89□□□□□ -1.79
YBX3-214ENST00000544501 JARID2Q92833 1246 aaPredicted RBP3.89□□□□□ -1.79
YBX3-214ENST00000544501 ELMO3Q96BJ8 720 aa3.89□□□□□ -1.79
YBX3-214ENST00000544501 PLPPR2Q96GM1 343 aa3.89□□□□□ -1.79
YBX3-214ENST00000544501 LRRC3Q9BY71 257 aa3.89□□□□□ -1.79
YBX3-214ENST00000544501 PIDD1Q9HB75 910 aa3.89□□□□□ -1.79
YBX3-214ENST00000544501 STOML1Q9UBI4 398 aa3.89□□□□□ -1.79
YBX3-214ENST00000544501 FAM95CA0A1B0GW59 222 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 DCDC2CA8MYV0 355 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 F6X3S4 739 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 GSC2O15499 205 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 F13A1P00488 732 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 RACK1P63244 317 aaKnown RBP3.88□□□□□ -1.79
YBX3-214ENST00000544501 FAM160A1Q05DH4 1040 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 TTLL4Q14679 1199 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 RSPO4Q2I0M5 234 aaPredicted RBP3.88□□□□□ -1.79
YBX3-214ENST00000544501 CWF19L2Q2TBE0 894 aaKnown RBP3.88□□□□□ -1.79
YBX3-214ENST00000544501 ZNF394Q53GI3 561 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 SGO2Q562F6 1265 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 WIPI1Q5MNZ9 446 aaPredicted RBP3.88□□□□□ -1.79
YBX3-214ENST00000544501 ZBTB37Q5TC79 503 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 PAOXQ6QHF9 649 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 PDZRN4Q6ZMN7 1036 aaPredicted RBP3.88□□□□□ -1.79
YBX3-214ENST00000544501 BNC2Q6ZN30 1099 aaPredicted RBP3.88□□□□□ -1.79
YBX3-214ENST00000544501 BEND4Q6ZU67 534 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 C12orf40Q86WS4 652 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 SMYD4Q8IYR2 804 aaPredicted RBP3.88□□□□□ -1.79
YBX3-214ENST00000544501 KCT2Q8NC54 265 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 ZNF507Q8TCN5 953 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 SPATA32Q96LK8 384 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 SPON2Q9BUD6 331 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 NT5C1AQ9BXI3 368 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 TGIF2Q9GZN2 237 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 WNT10AQ9GZT5 417 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 KCNF1Q9H3M0 494 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 SEMA6CQ9H3T2 930 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 ADAMTS1Q9UHI8 967 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 PCOLCE2Q9UKZ9 415 aa3.88□□□□□ -1.79
YBX3-214ENST00000544501 EPB41L3Q9Y2J2 1087 aaPredicted RBP3.88□□□□□ -1.79
YBX3-214ENST00000544501 NEFMP07197 916 aa3.87□□□□□ -1.79
YBX3-214ENST00000544501 NFICP08651 508 aa3.87□□□□□ -1.79
YBX3-214ENST00000544501 RXRBP28702 533 aa3.87□□□□□ -1.79
YBX3-214ENST00000544501 NTF4P34130 210 aa3.87□□□□□ -1.79
YBX3-214ENST00000544501 CAP2P40123 477 aa3.87□□□□□ -1.79
YBX3-214ENST00000544501 PDE4BQ07343 736 aa3.87□□□□□ -1.79
YBX3-214ENST00000544501 RAD51AP2Q09MP3 1159 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms