RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 CNKSR1Q969H4 720 aa16.79■□□□□ 0.28
VPS33A-209ENST00000544349 KRT23Q9C075 422 aa16.79■□□□□ 0.28
VPS33A-209ENST00000544349 CDC37L1Q7L3B6 337 aa16.79■□□□□ 0.28
VPS33A-209ENST00000544349 CCDC125Q86Z20 511 aa16.79■□□□□ 0.28
VPS33A-209ENST00000544349 TBC1D22AQ8WUA7 517 aa16.79■□□□□ 0.28
VPS33A-209ENST00000544349 SYAP1Q96A49 352 aaPredicted RBP16.79■□□□□ 0.28
VPS33A-209ENST00000544349 LLPHQ9BRT6 129 aaKnown RBP16.79■□□□□ 0.28
VPS33A-209ENST00000544349 MYH2Q9UKX2 1941 aa16.78■□□□□ 0.28
VPS33A-209ENST00000544349 MINDY4BA8MYZ0 360 aa16.78■□□□□ 0.28
VPS33A-209ENST00000544349 LDHCP07864 332 aa16.78■□□□□ 0.28
VPS33A-209ENST00000544349 PDIA4P13667 645 aaKnown RBP16.78■□□□□ 0.28
VPS33A-209ENST00000544349 MFSD14BQ5SR56 506 aa16.78■□□□□ 0.28
VPS33A-209ENST00000544349 TMEM87BQ96K49 555 aa16.78■□□□□ 0.28
VPS33A-209ENST00000544349 RNF41Q9H4P4 317 aaPredicted RBP16.78■□□□□ 0.28
VPS33A-209ENST00000544349 SH2B2O14492 632 aaPredicted RBP16.78■□□□□ 0.28
VPS33A-209ENST00000544349 CCT2P78371 535 aaKnown RBP16.78■□□□□ 0.28
VPS33A-209ENST00000544349 DIXDC1Q155Q3 683 aa16.78■□□□□ 0.28
VPS33A-209ENST00000544349 LARP1BQ659C4 914 aaKnown RBP16.78■□□□□ 0.28
VPS33A-209ENST00000544349 ZSCAN30Q86W11 494 aa16.78■□□□□ 0.28
VPS33A-209ENST00000544349 SMARCC2Q8TAQ2 1214 aa16.78■□□□□ 0.28
VPS33A-209ENST00000544349 UPF1Q92900 1129 aaKnown RBP eCLIP16.78■□□□□ 0.28
VPS33A-209ENST00000544349 EYA3Q99504 573 aa16.78■□□□□ 0.28
VPS33A-209ENST00000544349 DCP1AQ9NPI6 582 aaPredicted RBP16.78■□□□□ 0.28
VPS33A-209ENST00000544349 ATP8A2Q9NTI2 1148 aa16.78■□□□□ 0.28
VPS33A-209ENST00000544349 ZSWIM5Q9P217 1185 aa16.78■□□□□ 0.28
VPS33A-209ENST00000544349 NAP1L2Q9ULW6 460 aaPredicted RBP16.78■□□□□ 0.28
VPS33A-209ENST00000544349 ANGEL1Q9UNK9 670 aaKnown RBP16.78■□□□□ 0.28
VPS33A-209ENST00000544349 JAK2O60674 1132 aa16.77■□□□□ 0.28
VPS33A-209ENST00000544349 KDM4AO75164 1064 aa16.77■□□□□ 0.28
VPS33A-209ENST00000544349 PPP4CP60510 307 aa16.77■□□□□ 0.28
VPS33A-209ENST00000544349 GTF2IP78347 998 aa16.77■□□□□ 0.28
VPS33A-209ENST00000544349 CTR9Q6PD62 1173 aa16.77■□□□□ 0.28
VPS33A-209ENST00000544349 IGDCC4Q8TDY8 1250 aa16.77■□□□□ 0.28
VPS33A-209ENST00000544349 CHMP4CQ96CF2 233 aa16.77■□□□□ 0.28
VPS33A-209ENST00000544349 MROH7-TTC4A0A0A0MT08 1334 aa16.77■□□□□ 0.27
VPS33A-209ENST00000544349 KLF18A0A0U1RQI7 1052 aa16.76■□□□□ 0.27
VPS33A-209ENST00000544349 BAG3O95817 575 aa16.76■□□□□ 0.27
VPS33A-209ENST00000544349 PDCP20941 246 aa16.76■□□□□ 0.27
VPS33A-209ENST00000544349 UBE2HP62256 183 aa16.76■□□□□ 0.27
VPS33A-209ENST00000544349 NAP1L5Q96NT1 182 aaPredicted RBP16.76■□□□□ 0.27
VPS33A-209ENST00000544349 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.76■□□□□ 0.27
VPS33A-209ENST00000544349 MYH15Q9Y2K3 1946 aa16.76■□□□□ 0.27
VPS33A-209ENST00000544349 C10orf71Q711Q0 1435 aa16.76■□□□□ 0.27
VPS33A-209ENST00000544349 USP17L12C9JPN9 530 aa16.76■□□□□ 0.27
VPS33A-209ENST00000544349 USP17L21D6R901 530 aa16.76■□□□□ 0.27
VPS33A-209ENST00000544349 CTDNEP1O95476 244 aa16.76■□□□□ 0.27
VPS33A-209ENST00000544349 RRP12Q5JTH9 1297 aaKnown RBP16.76■□□□□ 0.27
VPS33A-209ENST00000544349 CCDC183Q5T5S1 534 aa16.76■□□□□ 0.27
VPS33A-209ENST00000544349 FERMT3Q86UX7 667 aa16.76■□□□□ 0.27
VPS33A-209ENST00000544349 STK11IPQ8N1F8 1099 aa16.76■□□□□ 0.27
VPS33A-209ENST00000544349 NSUN7Q8NE18 718 aaKnown RBP16.76■□□□□ 0.27
VPS33A-209ENST00000544349 C7orf43Q8WVR3 580 aa16.76■□□□□ 0.27
VPS33A-209ENST00000544349 NCOA5Q9HCD5 579 aaKnown RBP16.76■□□□□ 0.27
VPS33A-209ENST00000544349 CYP2D7A0A087X1C5 515 aa16.75■□□□□ 0.27
VPS33A-209ENST00000544349 SMIM22K7EJ46 135 aa16.75■□□□□ 0.27
VPS33A-209ENST00000544349 DOK7Q18PE1 504 aa16.75■□□□□ 0.27
VPS33A-209ENST00000544349 FAM173BQ6P4H8 233 aa16.75■□□□□ 0.27
VPS33A-209ENST00000544349 NOL10Q9BSC4 688 aaKnown RBP16.75■□□□□ 0.27
VPS33A-209ENST00000544349 RTFDC1Q9BY42 306 aaPredicted RBP16.75■□□□□ 0.27
VPS33A-209ENST00000544349 TOMM22Q9NS69 142 aa16.75■□□□□ 0.27
VPS33A-209ENST00000544349 HPS5Q9UPZ3 1129 aa16.75■□□□□ 0.27
VPS33A-209ENST00000544349 SBK1Q52WX2 424 aa16.75■□□□□ 0.27
VPS33A-209ENST00000544349 FAM163AQ96GL9 167 aaPredicted RBP16.75■□□□□ 0.27
VPS33A-209ENST00000544349 ZNF219Q9P2Y4 722 aaPredicted RBP16.75■□□□□ 0.27
VPS33A-209ENST00000544349 ATP6V1DQ9Y5K8 247 aa16.75■□□□□ 0.27
VPS33A-209ENST00000544349 GPR75-ASB3A0A0A6YYF3 556 aa16.74■□□□□ 0.27
VPS33A-209ENST00000544349 GOLGA8BA8MQT2 603 aa16.74■□□□□ 0.27
VPS33A-209ENST00000544349 FGRP09769 529 aa16.74■□□□□ 0.27
VPS33A-209ENST00000544349 LIFRP42702 1097 aa16.74■□□□□ 0.27
VPS33A-209ENST00000544349 HMGN5P82970 282 aaKnown RBP16.74■□□□□ 0.27
VPS33A-209ENST00000544349 TMEM67Q5HYA8 995 aa16.74■□□□□ 0.27
VPS33A-209ENST00000544349 SGMS1Q86VZ5 419 aa16.74■□□□□ 0.27
VPS33A-209ENST00000544349 CERS3Q8IU89 383 aa16.74■□□□□ 0.27
VPS33A-209ENST00000544349 SH3RF3Q8TEJ3 882 aaPredicted RBP16.74■□□□□ 0.27
VPS33A-209ENST00000544349 MTA3Q9BTC8 594 aa16.74■□□□□ 0.27
VPS33A-209ENST00000544349 LY9Q9HBG7 655 aa16.74■□□□□ 0.27
VPS33A-209ENST00000544349 ARPP21Q9UBL0 812 aaPredicted RBP16.74■□□□□ 0.27
VPS33A-209ENST00000544349 MKRN1Q9UHC7 482 aaKnown RBP16.74■□□□□ 0.27
VPS33A-209ENST00000544349 SUGT1Q9Y2Z0 365 aa16.74■□□□□ 0.27
VPS33A-209ENST00000544349 LAMB1P07942 1786 aa16.74■□□□□ 0.27
VPS33A-209ENST00000544349 G3V3G9 751 aa16.73■□□□□ 0.27
VPS33A-209ENST00000544349 IFIT3O14879 490 aaKnown RBP16.73■□□□□ 0.27
VPS33A-209ENST00000544349 PCP11498 1178 aaKnown RBP16.73■□□□□ 0.27
VPS33A-209ENST00000544349 DCAF8Q5TAQ9 597 aa16.73■□□□□ 0.27
VPS33A-209ENST00000544349 SLF2Q8IX21 1173 aa16.73■□□□□ 0.27
VPS33A-209ENST00000544349 DDX11Q96FC9 970 aa16.73■□□□□ 0.27
VPS33A-209ENST00000544349 SENP2Q9HC62 589 aa16.73■□□□□ 0.27
VPS33A-209ENST00000544349 DLEC1Q9Y238 1755 aa16.73■□□□□ 0.27
VPS33A-209ENST00000544349 PTPDC1A2A3K4 754 aa16.73■□□□□ 0.27
VPS33A-209ENST00000544349 BTDP43251 543 aa16.73■□□□□ 0.27
VPS33A-209ENST00000544349 CC2D2BQ6DHV5 1058 aa16.73■□□□□ 0.27
VPS33A-209ENST00000544349 PODNQ7Z5L7 613 aa16.73■□□□□ 0.27
VPS33A-209ENST00000544349 ESR2Q92731 530 aa16.73■□□□□ 0.27
VPS33A-209ENST00000544349 SNED1Q8TER0 1413 aa16.72■□□□□ 0.27
VPS33A-209ENST00000544349 DHX16O60231 1041 aaKnown RBP16.72■□□□□ 0.27
VPS33A-209ENST00000544349 USP5P45974 858 aa16.72■□□□□ 0.27
VPS33A-209ENST00000544349 TTC6Q86TZ1 520 aa16.72■□□□□ 0.27
VPS33A-209ENST00000544349 FAM184AQ8NB25 1140 aa16.72■□□□□ 0.27
VPS33A-209ENST00000544349 FBXW7Q969H0 707 aa16.72■□□□□ 0.27
VPS33A-209ENST00000544349 GAKO14976 1311 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms