RNA–Protein interactions for RNA: ENST00000544093.5

CHFR-222, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 942 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-222ENST00000544093 MIGA2Q7L4E1 593 aa28.39■■■□□ 2.14
CHFR-222ENST00000544093 ZSCAN29Q8IWY8 852 aaPredicted RBP28.39■■■□□ 2.14
CHFR-222ENST00000544093 APBB1O00213 710 aa28.38■■■□□ 2.13
CHFR-222ENST00000544093 GJA5P36382 358 aa28.38■■■□□ 2.13
CHFR-222ENST00000544093 GTF2A2P52657 109 aa28.38■■■□□ 2.13
CHFR-222ENST00000544093 ZNF112Q9UJU3 913 aa28.38■■■□□ 2.13
CHFR-222ENST00000544093 TESPA1A2RU30 521 aaPredicted RBP28.37■■■□□ 2.13
CHFR-222ENST00000544093 RRP1P56182 461 aaKnown RBP28.37■■■□□ 2.13
CHFR-222ENST00000544093 PICALMQ13492 652 aa28.37■■■□□ 2.13
CHFR-222ENST00000544093 CERS3Q8IU89 383 aa28.37■■■□□ 2.13
CHFR-222ENST00000544093 PPIL4Q8WUA2 492 aaKnown RBP eCLIP28.37■■■□□ 2.13
CHFR-222ENST00000544093 SNCAIPQ9Y6H5 919 aa28.37■■■□□ 2.13
CHFR-222ENST00000544093 COL2A1P02458 1487 aaPredicted RBP28.37■■■□□ 2.13
CHFR-222ENST00000544093 ATRNL1Q5VV63 1379 aa28.37■■■□□ 2.13
CHFR-222ENST00000544093 MYO5AQ9Y4I1 1855 aaKnown RBP28.36■■■□□ 2.13
CHFR-222ENST00000544093 TTF1Q15361 905 aaPredicted RBP28.36■■■□□ 2.13
CHFR-222ENST00000544093 ZFPM1Q8IX07 1006 aa28.36■■■□□ 2.13
CHFR-222ENST00000544093 ZKSCAN4Q969J2 545 aaPredicted RBP28.36■■■□□ 2.13
CHFR-222ENST00000544093 OTUD5Q96G74 571 aa28.36■■■□□ 2.13
CHFR-222ENST00000544093 PPP4CP60510 307 aa28.35■■■□□ 2.13
CHFR-222ENST00000544093 DDX4Q9NQI0 724 aaKnown RBP28.35■■■□□ 2.13
CHFR-222ENST00000544093 PIH1D3Q9NQM4 214 aaKnown RBP28.35■■■□□ 2.13
CHFR-222ENST00000544093 TBC1D8O95759 1140 aa28.34■■■□□ 2.13
CHFR-222ENST00000544093 MAP3K10Q02779 954 aa28.34■■■□□ 2.13
CHFR-222ENST00000544093 PPATQ06203 517 aa28.34■■■□□ 2.13
CHFR-222ENST00000544093 MAP3K12Q12852 859 aa28.34■■■□□ 2.13
CHFR-222ENST00000544093 NOL9Q5SY16 702 aaKnown RBP28.34■■■□□ 2.13
CHFR-222ENST00000544093 TEX11Q8IYF3 940 aa28.34■■■□□ 2.13
CHFR-222ENST00000544093 MS4A4AQ96JQ5 239 aa28.34■■■□□ 2.13
CHFR-222ENST00000544093 LRRCC1Q9C099 1032 aa28.34■■■□□ 2.13
CHFR-222ENST00000544093 IDH1O75874 414 aaKnown RBP28.33■■■□□ 2.13
CHFR-222ENST00000544093 PPIL2Q13356 520 aa28.33■■■□□ 2.13
CHFR-222ENST00000544093 AATFQ9NY61 560 aaKnown RBP eCLIP28.33■■■□□ 2.13
CHFR-222ENST00000544093 IGF2BP3O00425 579 aaKnown RBP eCLIP28.32■■■□□ 2.12
CHFR-222ENST00000544093 INPP5BP32019 993 aa28.32■■■□□ 2.12
CHFR-222ENST00000544093 SH3BP5LQ7L8J4 393 aa28.32■■■□□ 2.12
CHFR-222ENST00000544093 CNKSR2Q8WXI2 1034 aa28.32■■■□□ 2.12
CHFR-222ENST00000544093 OSBPL5Q9H0X9 879 aaPredicted RBP28.32■■■□□ 2.12
CHFR-222ENST00000544093 DDTLA6NHG4 134 aaPredicted RBP28.31■■■□□ 2.12
CHFR-222ENST00000544093 GPR25O00155 361 aa28.31■■■□□ 2.12
CHFR-222ENST00000544093 TBC1D12O60347 775 aa28.31■■■□□ 2.12
CHFR-222ENST00000544093 CETPP11597 493 aa28.31■■■□□ 2.12
CHFR-222ENST00000544093 SNAPC2Q13487 334 aa28.31■■■□□ 2.12
CHFR-222ENST00000544093 FOCADQ5VW36 1801 aa28.3■■■□□ 2.12
CHFR-222ENST00000544093 CCL15-CCL14A0A0B4J2E2 113 aa28.3■■■□□ 2.12
CHFR-222ENST00000544093 DGKZQ13574 1117 aa28.3■■■□□ 2.12
CHFR-222ENST00000544093 CCL15Q16663 113 aa28.3■■■□□ 2.12
CHFR-222ENST00000544093 SH3RF3Q8TEJ3 882 aaPredicted RBP28.3■■■□□ 2.12
CHFR-222ENST00000544093 DHX36Q9H2U1 1008 aaKnown RBP28.3■■■□□ 2.12
CHFR-222ENST00000544093 ZCCHC17Q9NP64 241 aaKnown RBP28.3■■■□□ 2.12
CHFR-222ENST00000544093 CYP7A1P22680 504 aa28.29■■■□□ 2.12
CHFR-222ENST00000544093 ZNF296Q8WUU4 475 aaPredicted RBP28.29■■■□□ 2.12
CHFR-222ENST00000544093 ABHD8Q96I13 439 aa28.29■■■□□ 2.12
CHFR-222ENST00000544093 DCTPP1Q9H773 170 aa28.29■■■□□ 2.12
CHFR-222ENST00000544093 CDK5RAP2Q96SN8 1893 aa28.28■■■□□ 2.12
CHFR-222ENST00000544093 PHF20L1A8MW92 1017 aa28.28■■■□□ 2.12
CHFR-222ENST00000544093 IRF6O14896 467 aa28.28■■■□□ 2.12
CHFR-222ENST00000544093 CTU1Q7Z7A3 348 aaKnown RBP28.28■■■□□ 2.12
CHFR-222ENST00000544093 ADGRA1Q86SQ6 560 aa28.28■■■□□ 2.12
CHFR-222ENST00000544093 SCYL3Q8IZE3 742 aa28.28■■■□□ 2.12
CHFR-222ENST00000544093 MAGEB6Q8N7X4 407 aa28.28■■■□□ 2.12
CHFR-222ENST00000544093 BRI3BPQ8WY22 251 aa28.28■■■□□ 2.12
CHFR-222ENST00000544093 PTPN18Q99952 460 aa28.28■■■□□ 2.12
CHFR-222ENST00000544093 MCOLN1Q9GZU1 580 aa28.28■■■□□ 2.12
CHFR-222ENST00000544093 CTNND1O60716 968 aaKnown RBP28.27■■■□□ 2.12
CHFR-222ENST00000544093 FKTNO75072 461 aa28.27■■■□□ 2.12
CHFR-222ENST00000544093 ANTXR1Q9H6X2 564 aa28.27■■■□□ 2.12
CHFR-222ENST00000544093 PICK1Q9NRD5 415 aa28.27■■■□□ 2.12
CHFR-222ENST00000544093 ATP5JP18859 108 aa28.26■■■□□ 2.11
CHFR-222ENST00000544093 PI4KBQ9UBF8 816 aa28.26■■■□□ 2.11
CHFR-222ENST00000544093 HERC5Q9UII4 1024 aaKnown RBP28.26■■■□□ 2.11
CHFR-222ENST00000544093 NDUFB9Q9Y6M9 179 aa28.26■■■□□ 2.11
CHFR-222ENST00000544093 DOCK1Q14185 1865 aa28.25■■■□□ 2.11
CHFR-222ENST00000544093 CAPN15O75808 1086 aa28.25■■■□□ 2.11
CHFR-222ENST00000544093 PKN2Q16513 984 aaKnown RBP28.25■■■□□ 2.11
CHFR-222ENST00000544093 BCL11AQ9H165 835 aa28.25■■■□□ 2.11
CHFR-222ENST00000544093 KCNH4Q9UQ05 1017 aa28.25■■■□□ 2.11
CHFR-222ENST00000544093 FLT1P17948 1338 aa28.24■■■□□ 2.11
CHFR-222ENST00000544093 CRHR2Q13324 411 aa28.24■■■□□ 2.11
CHFR-222ENST00000544093 TGFBRAP1Q8WUH2 860 aa28.24■■■□□ 2.11
CHFR-222ENST00000544093 DNAJC2Q99543 621 aaKnown RBP28.24■■■□□ 2.11
CHFR-222ENST00000544093 XPO5Q9HAV4 1204 aaKnown RBP eCLIP28.24■■■□□ 2.11
CHFR-222ENST00000544093 CXCL11O14625 94 aa28.23■■■□□ 2.11
CHFR-222ENST00000544093 AAMPQ13685 434 aa28.23■■■□□ 2.11
CHFR-222ENST00000544093 ZFYVE28Q9HCC9 887 aa28.23■■■□□ 2.11
CHFR-222ENST00000544093 GOLIM4O00461 696 aa28.22■■■□□ 2.11
CHFR-222ENST00000544093 TAF1CQ15572 869 aaPredicted RBP28.22■■■□□ 2.11
CHFR-222ENST00000544093 SLC9C2Q5TAH2 1124 aa28.22■■■□□ 2.11
CHFR-222ENST00000544093 GPATCH3Q96I76 525 aa28.22■■■□□ 2.11
CHFR-222ENST00000544093 R3HDMLQ9H3Y0 253 aa28.22■■■□□ 2.11
CHFR-222ENST00000544093 PAG1Q9NWQ8 432 aa28.22■■■□□ 2.11
CHFR-222ENST00000544093 PTPRAP18433 802 aa28.21■■■□□ 2.11
CHFR-222ENST00000544093 MAPKAPK5Q8IW41 473 aa28.21■■■□□ 2.11
CHFR-222ENST00000544093 MIGA1Q8NAN2 632 aa28.21■■■□□ 2.11
CHFR-222ENST00000544093 HAUS7Q99871 368 aa28.21■■■□□ 2.11
CHFR-222ENST00000544093 DDX24Q9GZR7 859 aaKnown RBP eCLIP28.21■■■□□ 2.11
CHFR-222ENST00000544093 HLA-DOAP06340 250 aa28.2■■■□□ 2.1
CHFR-222ENST00000544093 FOXP4Q8IVH2 680 aaPredicted RBP28.2■■■□□ 2.1
CHFR-222ENST00000544093 FAM43AQ8N2R8 423 aa28.2■■■□□ 2.1
CHFR-222ENST00000544093 BOLA2Q9H3K6 86 aa28.2■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms