RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	DDTL	A6NHG4	134 aa	Predicted RBP	13.41	□□□□□ -0.26
DDB1-222	ENST00000543627	ENTPD3	O75355	529 aa		13.41	□□□□□ -0.26
DDB1-222	ENST00000543627	WDHD1	O75717	1129 aa	Predicted RBP	13.41	□□□□□ -0.26
DDB1-222	ENST00000543627	TRPA1	O75762	1119 aa		13.41	□□□□□ -0.26
DDB1-222	ENST00000543627	SLURP2	P0DP57	97 aa		13.41	□□□□□ -0.26
DDB1-222	ENST00000543627	ATP5J	P18859	108 aa		13.41	□□□□□ -0.26
DDB1-222	ENST00000543627	USP5	P45974	858 aa		13.41	□□□□□ -0.26
DDB1-222	ENST00000543627	RHBDL3	P58872	404 aa		13.41	□□□□□ -0.26
DDB1-222	ENST00000543627	IDI2	Q9BXS1	227 aa		13.41	□□□□□ -0.26
DDB1-222	ENST00000543627	ECHDC1	Q9NTX5	307 aa		13.41	□□□□□ -0.26
DDB1-222	ENST00000543627	SAP30BP	Q9UHR5	308 aa	Known RBP	13.41	□□□□□ -0.26
DDB1-222	ENST00000543627	PLCG2	P16885	1265 aa		13.4	□□□□□ -0.26
DDB1-222	ENST00000543627	VGLL4	Q14135	290 aa		13.4	□□□□□ -0.26
DDB1-222	ENST00000543627	MAP3K11	Q16584	847 aa		13.4	□□□□□ -0.26
DDB1-222	ENST00000543627	SLFNL1	Q499Z3	407 aa		13.4	□□□□□ -0.26
DDB1-222	ENST00000543627	SPRYD7	Q5W111	196 aa		13.4	□□□□□ -0.26
DDB1-222	ENST00000543627	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	13.4	□□□□□ -0.26
DDB1-222	ENST00000543627	CNKSR2	Q8WXI2	1034 aa		13.4	□□□□□ -0.26
DDB1-222	ENST00000543627	OPTN	Q96CV9	577 aa		13.4	□□□□□ -0.26
DDB1-222	ENST00000543627	OTUD5	Q96G74	571 aa		13.4	□□□□□ -0.26
DDB1-222	ENST00000543627	WNK4	Q96J92	1243 aa		13.4	□□□□□ -0.26
DDB1-222	ENST00000543627	AKAP11	Q9UKA4	1901 aa		13.4	□□□□□ -0.26
DDB1-222	ENST00000543627	ZNF532	Q9HCE3	1301 aa		13.39	□□□□□ -0.27
DDB1-222	ENST00000543627	MAGEB6P1	A0A0J9YX57	407 aa		13.39	□□□□□ -0.27
DDB1-222	ENST00000543627	FAM196B	A6NMK8	535 aa		13.39	□□□□□ -0.27
DDB1-222	ENST00000543627	INPP5B	P32019	993 aa		13.39	□□□□□ -0.27
DDB1-222	ENST00000543627	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	13.39	□□□□□ -0.27
DDB1-222	ENST00000543627	SH3BP5L	Q7L8J4	393 aa		13.39	□□□□□ -0.27
DDB1-222	ENST00000543627	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	13.39	□□□□□ -0.27
DDB1-222	ENST00000543627	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.39	□□□□□ -0.27
DDB1-222	ENST00000543627	GCC1	Q96CN9	775 aa		13.39	□□□□□ -0.27
DDB1-222	ENST00000543627	HAUS7	Q99871	368 aa		13.39	□□□□□ -0.27
DDB1-222	ENST00000543627	TRIM34	Q9BYJ4	488 aa		13.39	□□□□□ -0.27
DDB1-222	ENST00000543627	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	13.39	□□□□□ -0.27
DDB1-222	ENST00000543627	MYO5A	Q9Y4I1	1855 aa	Known RBP	13.38	□□□□□ -0.27
DDB1-222	ENST00000543627	IGHD	P01880	384 aa		13.38	□□□□□ -0.27
DDB1-222	ENST00000543627	HSPA8	P11142	646 aa	Known RBP	13.38	□□□□□ -0.27
DDB1-222	ENST00000543627	PDE6A	P16499	860 aa		13.38	□□□□□ -0.27
DDB1-222	ENST00000543627	SREBF2	Q12772	1141 aa		13.38	□□□□□ -0.27
DDB1-222	ENST00000543627	HDAC1	Q13547	482 aa	Predicted RBP	13.38	□□□□□ -0.27
DDB1-222	ENST00000543627	COL13A1	Q5TAT6	717 aa	Predicted RBP	13.38	□□□□□ -0.27
DDB1-222	ENST00000543627	LNPK	Q9C0E8	428 aa		13.38	□□□□□ -0.27
DDB1-222	ENST00000543627	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	13.38	□□□□□ -0.27	2e-11	■□□□□ 9.4
DDB1-222	ENST00000543627	OSBPL5	Q9H0X9	879 aa	Predicted RBP	13.38	□□□□□ -0.27
DDB1-222	ENST00000543627	RNF186	Q9NXI6	227 aa		13.38	□□□□□ -0.27
DDB1-222	ENST00000543627	TBC1D8	O95759	1140 aa		13.37	□□□□□ -0.27
DDB1-222	ENST00000543627	PPP4C	P60510	307 aa		13.37	□□□□□ -0.27
DDB1-222	ENST00000543627	AAMP	Q13685	434 aa		13.37	□□□□□ -0.27
DDB1-222	ENST00000543627	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	13.37	□□□□□ -0.27
DDB1-222	ENST00000543627	PALD1	Q9ULE6	856 aa		13.37	□□□□□ -0.27
DDB1-222	ENST00000543627	MANSC4	A6NHS7	340 aa	Predicted RBP	13.36	□□□□□ -0.27
DDB1-222	ENST00000543627	ERC2	O15083	957 aa		13.36	□□□□□ -0.27
DDB1-222	ENST00000543627	CHGB	P05060	677 aa		13.36	□□□□□ -0.27
DDB1-222	ENST00000543627	GJA5	P36382	358 aa		13.36	□□□□□ -0.27
DDB1-222	ENST00000543627	REM2	Q8IYK8	340 aa	Predicted RBP	13.36	□□□□□ -0.27
DDB1-222	ENST00000543627	ARMT1	Q9H993	441 aa		13.36	□□□□□ -0.27
DDB1-222	ENST00000543627	PICK1	Q9NRD5	415 aa		13.36	□□□□□ -0.27
DDB1-222	ENST00000543627	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.35	□□□□□ -0.27
DDB1-222	ENST00000543627	UNCX	A6NJT0	531 aa		13.35	□□□□□ -0.27
DDB1-222	ENST00000543627	CA12	O43570	354 aa		13.35	□□□□□ -0.27
DDB1-222	ENST00000543627	POLR3D	P05423	398 aa	Predicted RBP	13.35	□□□□□ -0.27
DDB1-222	ENST00000543627	HLA-DOA	P06340	250 aa		13.35	□□□□□ -0.27
DDB1-222	ENST00000543627	ZBTB48	P10074	688 aa	Predicted RBP	13.35	□□□□□ -0.27
DDB1-222	ENST00000543627	MX1	P20591	662 aa		13.35	□□□□□ -0.27
DDB1-222	ENST00000543627	ZSCAN25	Q6NSZ9	544 aa		13.35	□□□□□ -0.27
DDB1-222	ENST00000543627	ERO1B	Q86YB8	467 aa		13.35	□□□□□ -0.27
DDB1-222	ENST00000543627	SNCAIP	Q9Y6H5	919 aa		13.35	□□□□□ -0.27
DDB1-222	ENST00000543627	FLT1	P17948	1338 aa		13.35	□□□□□ -0.27
DDB1-222	ENST00000543627	CCL15-CCL14	A0A0B4J2E2	113 aa		13.34	□□□□□ -0.27
DDB1-222	ENST00000543627	IGSF3	O75054	1194 aa		13.34	□□□□□ -0.27
DDB1-222	ENST00000543627	MBD4	O95243	580 aa		13.34	□□□□□ -0.27
DDB1-222	ENST00000543627	ADD2	P35612	726 aa		13.34	□□□□□ -0.27
DDB1-222	ENST00000543627	TM4SF4	P48230	202 aa		13.34	□□□□□ -0.27
DDB1-222	ENST00000543627	CCL15	Q16663	113 aa		13.34	□□□□□ -0.27
DDB1-222	ENST00000543627	OTUD7B	Q6GQQ9	843 aa		13.34	□□□□□ -0.27
DDB1-222	ENST00000543627	LCORL	Q8N3X6	602 aa		13.34	□□□□□ -0.27
DDB1-222	ENST00000543627	SDR42E1	Q8WUS8	393 aa		13.34	□□□□□ -0.27
DDB1-222	ENST00000543627	FSD1	Q9BTV5	496 aa		13.34	□□□□□ -0.27
DDB1-222	ENST00000543627	CRNKL1	Q9BZJ0	848 aa	Known RBP	13.34	□□□□□ -0.27
DDB1-222	ENST00000543627	DHX36	Q9H2U1	1008 aa	Known RBP	13.34	□□□□□ -0.27
DDB1-222	ENST00000543627	PI4KB	Q9UBF8	816 aa		13.34	□□□□□ -0.27
DDB1-222	ENST00000543627	SPDYE5	A6NIY4	337 aa		13.33	□□□□□ -0.28
DDB1-222	ENST00000543627	IRF6	O14896	467 aa		13.33	□□□□□ -0.28
DDB1-222	ENST00000543627	GLRX3	O76003	335 aa	Known RBP	13.33	□□□□□ -0.28
DDB1-222	ENST00000543627	GTF2A2	P52657	109 aa		13.33	□□□□□ -0.28
DDB1-222	ENST00000543627	INHBE	P58166	350 aa		13.33	□□□□□ -0.28
DDB1-222	ENST00000543627	CCDC84	Q86UT8	332 aa	Predicted RBP	13.33	□□□□□ -0.28
DDB1-222	ENST00000543627	IFNL1	Q8IU54	200 aa		13.33	□□□□□ -0.28
DDB1-222	ENST00000543627	CERS3	Q8IU89	383 aa		13.33	□□□□□ -0.28
DDB1-222	ENST00000543627	TNS4	Q8IZW8	715 aa		13.33	□□□□□ -0.28
DDB1-222	ENST00000543627	MCM9	Q9NXL9	1143 aa		13.33	□□□□□ -0.28
DDB1-222	ENST00000543627	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	13.33	□□□□□ -0.28
DDB1-222	ENST00000543627	ZHX2	Q9Y6X8	837 aa		13.33	□□□□□ -0.28
DDB1-222	ENST00000543627	TTC41P	Q6P2S7	1318 aa		13.33	□□□□□ -0.28
DDB1-222	ENST00000543627	TCRBV5S4A2T	A0A5A2	114 aa		13.32	□□□□□ -0.28
DDB1-222	ENST00000543627	PHF20L1	A8MW92	1017 aa		13.32	□□□□□ -0.28
DDB1-222	ENST00000543627	TRIM6-TRIM34	B2RNG4	842 aa		13.32	□□□□□ -0.28
DDB1-222	ENST00000543627	PRKAB2	O43741	272 aa		13.32	□□□□□ -0.28
DDB1-222	ENST00000543627	NPM3	O75607	178 aa	Known RBP	13.32	□□□□□ -0.28
DDB1-222	ENST00000543627	CHD1L	Q86WJ1	897 aa		13.32	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms