RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 TTLL11Q8NHH1 800 aa6.15□□□□□ -1.42
LIMS1-214ENST00000542845 PPM1EQ8WY54 764 aa6.15□□□□□ -1.42
LIMS1-214ENST00000542845 TEPSINQ96N21 525 aa6.15□□□□□ -1.42
LIMS1-214ENST00000542845 PLEKHF1Q96S99 279 aa6.15□□□□□ -1.42
LIMS1-214ENST00000542845 ANKRD2Q9GZV1 360 aa6.15□□□□□ -1.42
LIMS1-214ENST00000542845 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.15□□□□□ -1.42
LIMS1-214ENST00000542845 ZCCHC17Q9NP64 241 aaKnown RBP6.15□□□□□ -1.42
LIMS1-214ENST00000542845 TTF2Q9UNY4 1162 aaKnown RBP6.15□□□□□ -1.42
LIMS1-214ENST00000542845 DDX60LQ5H9U9 1706 aaKnown RBP6.14□□□□□ -1.43
LIMS1-214ENST00000542845 ELL2O00472 640 aaPredicted RBP6.14□□□□□ -1.43
LIMS1-214ENST00000542845 SNPHO15079 494 aa6.14□□□□□ -1.43
LIMS1-214ENST00000542845 FOSL2P15408 326 aa6.14□□□□□ -1.43
LIMS1-214ENST00000542845 PPATQ06203 517 aa6.14□□□□□ -1.43
LIMS1-214ENST00000542845 CHRNDQ07001 517 aa6.14□□□□□ -1.43
LIMS1-214ENST00000542845 MAP3K12Q12852 859 aa6.14□□□□□ -1.43
LIMS1-214ENST00000542845 CAMK2BQ13554 666 aa6.14□□□□□ -1.43
LIMS1-214ENST00000542845 FAM109BQ6ICB4 259 aaPredicted RBP6.14□□□□□ -1.43
LIMS1-214ENST00000542845 GADL1Q6ZQY3 521 aa6.14□□□□□ -1.43
LIMS1-214ENST00000542845 ZNF804AQ7Z570 1209 aa6.14□□□□□ -1.43
LIMS1-214ENST00000542845 DZIP1LQ8IYY4 767 aaKnown RBP6.14□□□□□ -1.43
LIMS1-214ENST00000542845 TMC2Q8TDI7 906 aa6.14□□□□□ -1.43
LIMS1-214ENST00000542845 LBHD1Q9BQE6 289 aaPredicted RBP6.14□□□□□ -1.43
LIMS1-214ENST00000542845 PNNQ9H307 717 aaKnown RBP6.14□□□□□ -1.43
LIMS1-214ENST00000542845 SEMA6BQ9H3T3 888 aa6.14□□□□□ -1.43
LIMS1-214ENST00000542845 PAK6Q9NQU5 681 aaPredicted RBP6.14□□□□□ -1.43
LIMS1-214ENST00000542845 ARIH1Q9Y4X5 557 aaPredicted RBP6.14□□□□□ -1.43
LIMS1-214ENST00000542845 MYH3P11055 1940 aa6.14□□□□□ -1.43
LIMS1-214ENST00000542845 LAMA3Q16787 3333 aa6.14□□□□□ -1.43
LIMS1-214ENST00000542845 CAPN2P17655 700 aa6.13□□□□□ -1.43
LIMS1-214ENST00000542845 ITGA6P23229 1130 aa6.13□□□□□ -1.43
LIMS1-214ENST00000542845 INPP5BP32019 993 aa6.13□□□□□ -1.43
LIMS1-214ENST00000542845 IRX5P78411 483 aaPredicted RBP6.13□□□□□ -1.43
LIMS1-214ENST00000542845 TRIM32Q13049 653 aa6.13□□□□□ -1.43
LIMS1-214ENST00000542845 TJAP1Q5JTD0 557 aa6.13□□□□□ -1.43
LIMS1-214ENST00000542845 MFSD14BQ5SR56 506 aa6.13□□□□□ -1.43
LIMS1-214ENST00000542845 ANKLE1Q8NAG6 615 aa6.13□□□□□ -1.43
LIMS1-214ENST00000542845 PXYLP1Q8TE99 480 aa6.13□□□□□ -1.43
LIMS1-214ENST00000542845 COA7Q96BR5 231 aa6.13□□□□□ -1.43
LIMS1-214ENST00000542845 PARK7Q99497 189 aaKnown RBP6.13□□□□□ -1.43
LIMS1-214ENST00000542845 KRTAP3-3Q9BYR6 98 aa6.13□□□□□ -1.43
LIMS1-214ENST00000542845 KRTAP3-2Q9BYR7 98 aa6.13□□□□□ -1.43
LIMS1-214ENST00000542845 HMX1Q9NP08 348 aaPredicted RBP6.13□□□□□ -1.43
LIMS1-214ENST00000542845 BABAM1Q9NWV8 329 aa6.13□□□□□ -1.43
LIMS1-214ENST00000542845 ADGRA2Q96PE1 1338 aa6.13□□□□□ -1.43
LIMS1-214ENST00000542845 BCRP11274 1271 aa6.12□□□□□ -1.43
LIMS1-214ENST00000542845 CRKP46108 304 aa6.12□□□□□ -1.43
LIMS1-214ENST00000542845 LRRC26Q2I0M4 334 aa6.12□□□□□ -1.43
LIMS1-214ENST00000542845 DUSP27Q5VZP5 1158 aa6.12□□□□□ -1.43
LIMS1-214ENST00000542845 DCAF15Q66K64 600 aa6.12□□□□□ -1.43
LIMS1-214ENST00000542845 FAM205AQ6ZU69 1335 aa6.12□□□□□ -1.43
LIMS1-214ENST00000542845 UBE3BQ7Z3V4 1068 aa6.12□□□□□ -1.43
LIMS1-214ENST00000542845 SMCR8Q8TEV9 937 aaPredicted RBP6.12□□□□□ -1.43
LIMS1-214ENST00000542845 ARAP2Q8WZ64 1704 aa6.12□□□□□ -1.43
LIMS1-214ENST00000542845 METTL22Q9BUU2 404 aaPredicted RBP6.12□□□□□ -1.43
LIMS1-214ENST00000542845 ZNF341Q9BYN7 854 aa6.12□□□□□ -1.43
LIMS1-214ENST00000542845 KDM4CQ9H3R0 1056 aa6.12□□□□□ -1.43
LIMS1-214ENST00000542845 TMOD2Q9NZR1 351 aa6.12□□□□□ -1.43
LIMS1-214ENST00000542845 SERPINA10Q9UK55 444 aa6.12□□□□□ -1.43
LIMS1-214ENST00000542845 IQSEC3Q9UPP2 1182 aaPredicted RBP6.12□□□□□ -1.43
LIMS1-214ENST00000542845 MAP3K2Q9Y2U5 619 aa6.12□□□□□ -1.43
LIMS1-214ENST00000542845 CHMP3Q9Y3E7 222 aa6.12□□□□□ -1.43
LIMS1-214ENST00000542845 DOCK3Q8IZD9 2030 aa6.11□□□□□ -1.43
LIMS1-214ENST00000542845 POTEB3A0JP26 581 aa6.11□□□□□ -1.43
LIMS1-214ENST00000542845 CHL1O00533 1208 aa6.11□□□□□ -1.43
LIMS1-214ENST00000542845 DDX58O95786 925 aaKnown RBP6.11□□□□□ -1.43
LIMS1-214ENST00000542845 IL1R1P14778 569 aa6.11□□□□□ -1.43
LIMS1-214ENST00000542845 TMPOP42166 694 aaKnown RBP6.11□□□□□ -1.43
LIMS1-214ENST00000542845 FKBP1AP62942 108 aaKnown RBP6.11□□□□□ -1.43
LIMS1-214ENST00000542845 LMOD3Q0VAK6 560 aa6.11□□□□□ -1.43
LIMS1-214ENST00000542845 CHAF1AQ13111 956 aaPredicted RBP6.11□□□□□ -1.43
LIMS1-214ENST00000542845 IRF5Q13568 498 aa6.11□□□□□ -1.43
LIMS1-214ENST00000542845 SHHQ15465 462 aa6.11□□□□□ -1.43
LIMS1-214ENST00000542845 CWF19L2Q2TBE0 894 aaKnown RBP6.11□□□□□ -1.43
LIMS1-214ENST00000542845 GPAT2Q6NUI2 795 aa6.11□□□□□ -1.43
LIMS1-214ENST00000542845 POTEBQ6S5H4 581 aa6.11□□□□□ -1.43
LIMS1-214ENST00000542845 ANKRD13CQ8N6S4 541 aa6.11□□□□□ -1.43
LIMS1-214ENST00000542845 HOOK2Q96ED9 719 aa6.11□□□□□ -1.43
LIMS1-214ENST00000542845 GPHNQ9NQX3 736 aaPredicted RBP6.11□□□□□ -1.43
LIMS1-214ENST00000542845 PRKAG2Q9UGJ0 569 aa6.11□□□□□ -1.43
LIMS1-214ENST00000542845 VCANP13611 3396 aa6.11□□□□□ -1.43
LIMS1-214ENST00000542845 SPTBN5Q9NRC6 3674 aaKnown RBP6.11□□□□□ -1.43
LIMS1-214ENST00000542845 PFASO15067 1338 aa6.1□□□□□ -1.43
LIMS1-214ENST00000542845 ANKRD18BA2A2Z9 1011 aa6.1□□□□□ -1.43
LIMS1-214ENST00000542845 GRXCR2A6NFK2 248 aa6.1□□□□□ -1.43
LIMS1-214ENST00000542845 SPDYE16A6NNV3 312 aaPredicted RBP6.1□□□□□ -1.43
LIMS1-214ENST00000542845 FRAT2O75474 233 aaPredicted RBP6.1□□□□□ -1.43
LIMS1-214ENST00000542845 HMGCRP04035 888 aa6.1□□□□□ -1.43
LIMS1-214ENST00000542845 GYG1P46976 350 aa6.1□□□□□ -1.43
LIMS1-214ENST00000542845 PDE4DQ08499 809 aa6.1□□□□□ -1.43
LIMS1-214ENST00000542845 NEXNQ0ZGT2 675 aa6.1□□□□□ -1.43
LIMS1-214ENST00000542845 TCP10Q12799 353 aa6.1□□□□□ -1.43
LIMS1-214ENST00000542845 MOGSQ13724 837 aa6.1□□□□□ -1.43
LIMS1-214ENST00000542845 PDE3AQ14432 1141 aa6.1□□□□□ -1.43
LIMS1-214ENST00000542845 GRIK5Q16478 980 aa6.1□□□□□ -1.43
LIMS1-214ENST00000542845 CCDC146Q8IYE0 955 aa6.1□□□□□ -1.43
LIMS1-214ENST00000542845 USP38Q8NB14 1042 aa6.1□□□□□ -1.43
LIMS1-214ENST00000542845 SENP6Q9GZR1 1112 aaPredicted RBP6.1□□□□□ -1.43
LIMS1-214ENST00000542845 TTYH1Q9H313 450 aaPredicted RBP6.1□□□□□ -1.43
LIMS1-214ENST00000542845 KCNH4Q9UQ05 1017 aa6.1□□□□□ -1.43
LIMS1-214ENST00000542845 ZHX2Q9Y6X8 837 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms