RNA–Protein interactions for RNA: ENST00000542700.6

CHMP4A-209, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3

Gene CHMP4A, Length 847 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-209ENST00000542700 SNAP23O00161 211 aa10.03□□□□□ -0.8
CHMP4A-209ENST00000542700 TLL1O43897 1013 aa10.03□□□□□ -0.8
CHMP4A-209ENST00000542700 CRKP46108 304 aa10.03□□□□□ -0.8
CHMP4A-209ENST00000542700 CTSWP56202 376 aa10.03□□□□□ -0.8
CHMP4A-209ENST00000542700 TRIM28Q13263 835 aaKnown RBP10.03□□□□□ -0.8
CHMP4A-209ENST00000542700 PRRT2Q7Z6L0 340 aaPredicted RBP10.03□□□□□ -0.8
CHMP4A-209ENST00000542700 GREM2Q9H772 168 aa10.03□□□□□ -0.8
CHMP4A-209ENST00000542700 SLC45A1Q9Y2W3 748 aa10.03□□□□□ -0.8
CHMP4A-209ENST00000542700 XIRP2A4UGR9 3374 aa10.03□□□□□ -0.8
CHMP4A-209ENST00000542700 PCCAP05165 728 aaPredicted RBP10.02□□□□□ -0.81
CHMP4A-209ENST00000542700 ITGB8P26012 769 aa10.02□□□□□ -0.81
CHMP4A-209ENST00000542700 ZNF804AQ7Z570 1209 aa10.02□□□□□ -0.81
CHMP4A-209ENST00000542700 ANKRD2Q9GZV1 360 aa10.02□□□□□ -0.81
CHMP4A-209ENST00000542700 DAGLAQ9Y4D2 1042 aa10.02□□□□□ -0.81
CHMP4A-209ENST00000542700 PLXNB2O15031 1838 aa10.02□□□□□ -0.81
CHMP4A-209ENST00000542700 RPAP1Q9BWH6 1393 aaPredicted RBP10.01□□□□□ -0.81
CHMP4A-209ENST00000542700 DNM1LO00429 736 aa10.01□□□□□ -0.81
CHMP4A-209ENST00000542700 IL1R1P14778 569 aa10.01□□□□□ -0.81
CHMP4A-209ENST00000542700 IGHMBP2P38935 993 aaKnown RBP10.01□□□□□ -0.81
CHMP4A-209ENST00000542700 FPGSQ05932 587 aa10.01□□□□□ -0.81
CHMP4A-209ENST00000542700 CCL14Q16627 93 aa10.01□□□□□ -0.81
CHMP4A-209ENST00000542700 MFSD14BQ5SR56 506 aa10.01□□□□□ -0.81
CHMP4A-209ENST00000542700 NOL9Q5SY16 702 aaKnown RBP10.01□□□□□ -0.81
CHMP4A-209ENST00000542700 SLC39A5Q6ZMH5 540 aa10.01□□□□□ -0.81
CHMP4A-209ENST00000542700 ANKS1AQ92625 1134 aa10.01□□□□□ -0.81
CHMP4A-209ENST00000542700 TMOD2Q9NZR1 351 aa10.01□□□□□ -0.81
CHMP4A-209ENST00000542700 NUDCQ9Y266 331 aa10.01□□□□□ -0.81
CHMP4A-209ENST00000542700 ZHX2Q9Y6X8 837 aa10.01□□□□□ -0.81
CHMP4A-209ENST00000542700 PLXNA1Q9UIW2 1896 aa10.01□□□□□ -0.81
CHMP4A-209ENST00000542700 CFAP54Q96N23 3096 aa10.01□□□□□ -0.81
CHMP4A-209ENST00000542700 DLG5Q8TDM6 1919 aa10□□□□□ -0.81
CHMP4A-209ENST00000542700 HERVK_113Q902F9 699 aa10□□□□□ -0.81
CHMP4A-209ENST00000542700 CFAP53Q96M91 514 aa10□□□□□ -0.81
CHMP4A-209ENST00000542700 MYD88Q99836 296 aa10□□□□□ -0.81
CHMP4A-209ENST00000542700 ZNF112Q9UJU3 913 aa10□□□□□ -0.81
CHMP4A-209ENST00000542700 AGTPBP1Q9UPW5 1226 aa10□□□□□ -0.81
CHMP4A-209ENST00000542700 GFRA3O60609 400 aa9.99□□□□□ -0.81
CHMP4A-209ENST00000542700 XRCC5P13010 732 aaKnown RBP9.99□□□□□ -0.81
CHMP4A-209ENST00000542700 CHRNDQ07001 517 aa9.99□□□□□ -0.81
CHMP4A-209ENST00000542700 KRT24Q2M2I5 525 aa9.99□□□□□ -0.81
CHMP4A-209ENST00000542700 TREML2Q5T2D2 321 aa9.99□□□□□ -0.81
CHMP4A-209ENST00000542700 GJC2Q5T442 439 aaPredicted RBP9.99□□□□□ -0.81
CHMP4A-209ENST00000542700 FAM83AQ86UY5 434 aa9.99□□□□□ -0.81
CHMP4A-209ENST00000542700 TTLL11Q8NHH1 800 aa9.99□□□□□ -0.81
CHMP4A-209ENST00000542700 SOCS4Q8WXH5 440 aa9.99□□□□□ -0.81
CHMP4A-209ENST00000542700 NUDT12Q9BQG2 462 aa9.99□□□□□ -0.81
CHMP4A-209ENST00000542700 NKX2-4Q9H2Z4 354 aa9.99□□□□□ -0.81
CHMP4A-209ENST00000542700 DDX20Q9UHI6 824 aaKnown RBP9.99□□□□□ -0.81
CHMP4A-209ENST00000542700 PNMA3Q9UL41 463 aa9.99□□□□□ -0.81
CHMP4A-209ENST00000542700 RLFQ13129 1914 aa9.99□□□□□ -0.81
CHMP4A-209ENST00000542700 WDFY4Q6ZS81 3184 aa9.99□□□□□ -0.81
CHMP4A-209ENST00000542700 TRIM75PA6NK02 468 aa9.98□□□□□ -0.81
CHMP4A-209ENST00000542700 MYCNP04198 464 aaPredicted RBP9.98□□□□□ -0.81
CHMP4A-209ENST00000542700 RAG1P15918 1043 aa9.98□□□□□ -0.81
CHMP4A-209ENST00000542700 CNGA1P29973 690 aa9.98□□□□□ -0.81
CHMP4A-209ENST00000542700 SNX17Q15036 470 aa9.98□□□□□ -0.81
CHMP4A-209ENST00000542700 ERMP1Q7Z2K6 904 aa9.98□□□□□ -0.81
CHMP4A-209ENST00000542700 TRMT44Q8IYL2 757 aaKnown RBP9.98□□□□□ -0.81
CHMP4A-209ENST00000542700 LPAR1Q92633 364 aa9.98□□□□□ -0.81
CHMP4A-209ENST00000542700 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.98□□□□□ -0.819e-7■■■□□ 14.9
CHMP4A-209ENST00000542700 PICK1Q9NRD5 415 aa9.98□□□□□ -0.81
CHMP4A-209ENST00000542700 CWC25Q9NXE8 425 aaPredicted RBP9.98□□□□□ -0.81
CHMP4A-209ENST00000542700 MSRAQ9UJ68 235 aa9.98□□□□□ -0.81
CHMP4A-209ENST00000542700 KBTBD13C9JR72 458 aa9.97□□□□□ -0.81
CHMP4A-209ENST00000542700 TAF5LO75529 589 aa9.97□□□□□ -0.81
CHMP4A-209ENST00000542700 PTPRAP18433 802 aa9.97□□□□□ -0.81
CHMP4A-209ENST00000542700 GCLCP48506 637 aaPredicted RBP9.97□□□□□ -0.81
CHMP4A-209ENST00000542700 TLE2Q04725 743 aa9.97□□□□□ -0.81
CHMP4A-209ENST00000542700 C15orf52Q6ZUT6 534 aaKnown RBP9.97□□□□□ -0.81
CHMP4A-209ENST00000542700 CCDC191Q8NCU4 936 aa9.97□□□□□ -0.81
CHMP4A-209ENST00000542700 MPHOSPH8Q99549 860 aa9.97□□□□□ -0.81
CHMP4A-209ENST00000542700 SLC28A3Q9HAS3 691 aa9.97□□□□□ -0.81
CHMP4A-209ENST00000542700 COG5Q9UP83 839 aa9.97□□□□□ -0.81
CHMP4A-209ENST00000542700 AFG3L2Q9Y4W6 797 aa9.97□□□□□ -0.81
CHMP4A-209ENST00000542700 REV3LO60673 3130 aa9.97□□□□□ -0.81
CHMP4A-209ENST00000542700 PKD1L2Q7Z442 2459 aa9.96□□□□□ -0.81
CHMP4A-209ENST00000542700 PTPRFP10586 1907 aa9.96□□□□□ -0.81
CHMP4A-209ENST00000542700 CLTBP09497 229 aa9.96□□□□□ -0.82
CHMP4A-209ENST00000542700 ALADP13716 330 aa9.96□□□□□ -0.82
CHMP4A-209ENST00000542700 SSTR3P32745 418 aaPredicted RBP9.96□□□□□ -0.82
CHMP4A-209ENST00000542700 GOLGA2Q08379 1002 aa9.96□□□□□ -0.82
CHMP4A-209ENST00000542700 RAB30Q15771 203 aa9.96□□□□□ -0.82
CHMP4A-209ENST00000542700 GRIK5Q16478 980 aa9.96□□□□□ -0.82
CHMP4A-209ENST00000542700 HDGFL1Q5TGJ6 251 aa9.96□□□□□ -0.82
CHMP4A-209ENST00000542700 SCYL3Q8IZE3 742 aa9.96□□□□□ -0.82
CHMP4A-209ENST00000542700 FERMT2Q96AC1 680 aa9.96□□□□□ -0.82
CHMP4A-209ENST00000542700 APBA2Q99767 749 aa9.96□□□□□ -0.82
CHMP4A-209ENST00000542700 TACC3Q9Y6A5 838 aa9.96□□□□□ -0.82
CHMP4A-209ENST00000542700 CHD9Q3L8U1 2897 aa9.96□□□□□ -0.82
CHMP4A-209ENST00000542700 ZNF318Q5VUA4 2279 aa9.95□□□□□ -0.82
CHMP4A-209ENST00000542700 SPTBN4Q9H254 2564 aa9.95□□□□□ -0.82
CHMP4A-209ENST00000542700 BAHCC1Q9P281 2608 aa9.95□□□□□ -0.82
CHMP4A-209ENST00000542700 MSCO60682 206 aa9.95□□□□□ -0.82
CHMP4A-209ENST00000542700 PEX10O60683 326 aa9.95□□□□□ -0.82
CHMP4A-209ENST00000542700 NEFMP07197 916 aa9.95□□□□□ -0.82
CHMP4A-209ENST00000542700 HSPA5P11021 654 aaKnown RBP9.95□□□□□ -0.82
CHMP4A-209ENST00000542700 RGS2P41220 211 aa9.95□□□□□ -0.82
CHMP4A-209ENST00000542700 TCP10Q12799 353 aa9.95□□□□□ -0.82
CHMP4A-209ENST00000542700 FKBP1CQ5VVH2 108 aa9.95□□□□□ -0.82
CHMP4A-209ENST00000542700 CCDC84Q86UT8 332 aaPredicted RBP9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms