RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 DIEXFQ68CQ4 756 aaKnown RBP5.36□□□□□ -1.55
USP28-210ENST00000542033 TTBK2Q6IQ55 1244 aa5.36□□□□□ -1.55
USP28-210ENST00000542033 CDPF1Q6NVV7 123 aa5.36□□□□□ -1.55
USP28-210ENST00000542033 GSX1Q9H4S2 264 aaPredicted RBP5.36□□□□□ -1.55
USP28-210ENST00000542033 CRIM1Q9NZV1 1036 aa5.36□□□□□ -1.55
USP28-210ENST00000542033 RNF112Q9ULX5 631 aa5.36□□□□□ -1.55
USP28-210ENST00000542033 SCO2A0A1W2PP80 73 aa5.35□□□□□ -1.55
USP28-210ENST00000542033 UNCXA6NJT0 531 aa5.35□□□□□ -1.55
USP28-210ENST00000542033 BMP6P22004 513 aa5.35□□□□□ -1.55
USP28-210ENST00000542033 GRIK1P39086 918 aa5.35□□□□□ -1.55
USP28-210ENST00000542033 LIG3P49916 1009 aa5.35□□□□□ -1.55
USP28-210ENST00000542033 CPSF6Q16630 551 aaKnown RBP eCLIP5.35□□□□□ -1.55
USP28-210ENST00000542033 RELL1Q8IUW5 271 aa5.35□□□□□ -1.55
USP28-210ENST00000542033 STK35Q8TDR2 534 aa5.35□□□□□ -1.55
USP28-210ENST00000542033 GPBAR1Q8TDU6 330 aa5.35□□□□□ -1.55
USP28-210ENST00000542033 ZNF428Q96B54 188 aa5.35□□□□□ -1.55
USP28-210ENST00000542033 WDR89Q96FK6 387 aaPredicted RBP5.35□□□□□ -1.55
USP28-210ENST00000542033 METTL22Q9BUU2 404 aaPredicted RBP5.35□□□□□ -1.55
USP28-210ENST00000542033 ACSS3Q9H6R3 686 aa5.35□□□□□ -1.55
USP28-210ENST00000542033 FAM105AQ9NUU6 356 aa5.35□□□□□ -1.55
USP28-210ENST00000542033 PPP1R9AQ9ULJ8 1098 aa5.35□□□□□ -1.55
USP28-210ENST00000542033 NFICP08651 508 aa5.34□□□□□ -1.55
USP28-210ENST00000542033 ZNF76P36508 570 aa5.34□□□□□ -1.55
USP28-210ENST00000542033 RPS26P62854 115 aaKnown RBP5.34□□□□□ -1.55
USP28-210ENST00000542033 ERVK-24P63145 666 aa5.34□□□□□ -1.55
USP28-210ENST00000542033 PWP1Q13610 501 aa5.34□□□□□ -1.55
USP28-210ENST00000542033 HS2ST1Q7LGA3 356 aa5.34□□□□□ -1.55
USP28-210ENST00000542033 GRIN3AQ8TCU5 1115 aa5.34□□□□□ -1.55
USP28-210ENST00000542033 MFSD14AQ96MC6 490 aa5.34□□□□□ -1.55
USP28-210ENST00000542033 FANCD2OSQ96PS1 177 aa5.34□□□□□ -1.55
USP28-210ENST00000542033 SEMA6CQ9H3T2 930 aa5.34□□□□□ -1.55
USP28-210ENST00000542033 PICK1Q9NRD5 415 aa5.34□□□□□ -1.55
USP28-210ENST00000542033 ATG3Q9NT62 314 aa5.34□□□□□ -1.55
USP28-210ENST00000542033 CACNA2D2Q9NY47 1150 aa5.34□□□□□ -1.55
USP28-210ENST00000542033 KIAA1522Q9P206 1035 aaPredicted RBP5.34□□□□□ -1.55
USP28-210ENST00000542033 GGT7Q9UJ14 662 aa5.34□□□□□ -1.55
USP28-210ENST00000542033 DAGLAQ9Y4D2 1042 aa5.34□□□□□ -1.55
USP28-210ENST00000542033 SCAMP3O14828 347 aaKnown RBP5.33□□□□□ -1.56
USP28-210ENST00000542033 RNGTTO60942 597 aaKnown RBP5.33□□□□□ -1.56
USP28-210ENST00000542033 RECKO95980 971 aa5.33□□□□□ -1.56
USP28-210ENST00000542033 CYP27A1Q02318 531 aa5.33□□□□□ -1.56
USP28-210ENST00000542033 ZC3H12AQ5D1E8 599 aaKnown RBP5.33□□□□□ -1.56
USP28-210ENST00000542033 ZDHHC13Q8IUH4 622 aa5.33□□□□□ -1.56
USP28-210ENST00000542033 SMYD4Q8IYR2 804 aaPredicted RBP5.33□□□□□ -1.56
USP28-210ENST00000542033 SHKBP1Q8TBC3 707 aa5.33□□□□□ -1.56
USP28-210ENST00000542033 TBC1D32Q96NH3 1257 aa5.33□□□□□ -1.56
USP28-210ENST00000542033 OSBPL1AQ9BXW6 950 aa5.33□□□□□ -1.56
USP28-210ENST00000542033 MIR1-1HGQ9H1L0 117 aa5.33□□□□□ -1.56
USP28-210ENST00000542033 METTL5Q9NRN9 209 aaKnown RBP5.33□□□□□ -1.56
USP28-210ENST00000542033 PCDHA4Q9UN74 947 aa5.33□□□□□ -1.56
USP28-210ENST00000542033 PCDHGC5Q9Y5F6 944 aa5.33□□□□□ -1.56
USP28-210ENST00000542033 WDR64B1ANS9 1081 aa5.32□□□□□ -1.56
USP28-210ENST00000542033 F6X3S4 739 aa5.32□□□□□ -1.56
USP28-210ENST00000542033 GBP2P32456 591 aaPredicted RBP5.32□□□□□ -1.56
USP28-210ENST00000542033 LRP8Q14114 963 aa5.32□□□□□ -1.56
USP28-210ENST00000542033 TTLL4Q14679 1199 aa5.32□□□□□ -1.56
USP28-210ENST00000542033 RASIP1Q5U651 963 aa5.32□□□□□ -1.56
USP28-210ENST00000542033 INTS5Q6P9B9 1019 aaKnown RBP5.32□□□□□ -1.56
USP28-210ENST00000542033 AGMOQ6ZNB7 445 aa5.32□□□□□ -1.56
USP28-210ENST00000542033 ZAR1Q86SH2 424 aa5.32□□□□□ -1.56
USP28-210ENST00000542033 FBXL6Q8N531 539 aa5.32□□□□□ -1.56
USP28-210ENST00000542033 RNF214Q8ND24 703 aa5.32□□□□□ -1.56
USP28-210ENST00000542033 RNF34Q969K3 372 aa5.32□□□□□ -1.56
USP28-210ENST00000542033 ELMO3Q96BJ8 720 aa5.32□□□□□ -1.56
USP28-210ENST00000542033 RSRP1Q9BUV0 290 aa5.32□□□□□ -1.56
USP28-210ENST00000542033 SSU72Q9NP77 194 aaKnown RBP5.32□□□□□ -1.56
USP28-210ENST00000542033 DISC1Q9NRI5 854 aa5.32□□□□□ -1.56
USP28-210ENST00000542033 PRKAG2Q9UGJ0 569 aa5.32□□□□□ -1.56
USP28-210ENST00000542033 PCOLCE2Q9UKZ9 415 aa5.32□□□□□ -1.56
USP28-210ENST00000542033 MINDY4BA8MYZ0 360 aa5.31□□□□□ -1.56
USP28-210ENST00000542033 E9PSI1 815 aa5.31□□□□□ -1.56
USP28-210ENST00000542033 COBLO75128 1261 aa5.31□□□□□ -1.56
USP28-210ENST00000542033 LDLRAD1Q5T700 205 aa5.31□□□□□ -1.56
USP28-210ENST00000542033 LCE3BQ5TA77 95 aa5.31□□□□□ -1.56
USP28-210ENST00000542033 DUSP27Q5VZP5 1158 aa5.31□□□□□ -1.56
USP28-210ENST00000542033 MPRIPQ6WCQ1 1025 aa5.31□□□□□ -1.56
USP28-210ENST00000542033 HDXQ7Z353 690 aa5.31□□□□□ -1.56
USP28-210ENST00000542033 PHC3Q8NDX5 983 aa5.31□□□□□ -1.56
USP28-210ENST00000542033 TMEM74Q96NL1 305 aa5.31□□□□□ -1.56
USP28-210ENST00000542033 KBTBD4Q9NVX7 518 aa5.31□□□□□ -1.56
USP28-210ENST00000542033 TLR6Q9Y2C9 796 aa5.31□□□□□ -1.56
USP28-210ENST00000542033 LEMD3Q9Y2U8 911 aa5.31□□□□□ -1.56
USP28-210ENST00000542033 FANCGO15287 622 aa5.3□□□□□ -1.56
USP28-210ENST00000542033 TGFB1P01137 390 aa5.3□□□□□ -1.56
USP28-210ENST00000542033 F13BP05160 661 aa5.3□□□□□ -1.56
USP28-210ENST00000542033 HCLS1P14317 486 aaPredicted RBP5.3□□□□□ -1.56
USP28-210ENST00000542033 TFE3P19532 575 aaPredicted RBP5.3□□□□□ -1.56
USP28-210ENST00000542033 FANCCQ00597 558 aa5.3□□□□□ -1.56
USP28-210ENST00000542033 CAMK2GQ13555 558 aaPredicted RBP5.3□□□□□ -1.56
USP28-210ENST00000542033 SEPT6Q14141 434 aa5.3□□□□□ -1.56
USP28-210ENST00000542033 SNAP47Q5SQN1 464 aa5.3□□□□□ -1.56
USP28-210ENST00000542033 ARTNQ5T4W7 220 aa5.3□□□□□ -1.56
USP28-210ENST00000542033 ERMP1Q7Z2K6 904 aa5.3□□□□□ -1.56
USP28-210ENST00000542033 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.3□□□□□ -1.56
USP28-210ENST00000542033 KCT2Q8NC54 265 aa5.3□□□□□ -1.56
USP28-210ENST00000542033 ZFP64Q9NPA5 681 aa5.3□□□□□ -1.56
USP28-210ENST00000542033 COPRSQ9NQ92 184 aa5.3□□□□□ -1.56
USP28-210ENST00000542033 PIM2Q9P1W9 311 aa5.3□□□□□ -1.56
USP28-210ENST00000542033 PCDHB5Q9Y5E4 795 aa5.3□□□□□ -1.56
USP28-210ENST00000542033 SNCAIPQ9Y6H5 919 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms