RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 ZSCAN29Q8IWY8 852 aaPredicted RBP22.59■■□□□ 1.21
VPS33A-205ENST00000541169 RILPL2Q969X0 211 aa22.59■■□□□ 1.21
VPS33A-205ENST00000541169 OSBPL5Q9H0X9 879 aaPredicted RBP22.59■■□□□ 1.21
VPS33A-205ENST00000541169 ATP8A2Q9NTI2 1148 aa22.59■■□□□ 1.21
VPS33A-205ENST00000541169 ABT1Q9ULW3 272 aaKnown RBP22.59■■□□□ 1.21
VPS33A-205ENST00000541169 IREB2P48200 963 aaKnown RBP22.58■■□□□ 1.21
VPS33A-205ENST00000541169 PICALMQ13492 652 aa22.58■■□□□ 1.21
VPS33A-205ENST00000541169 NBPF12Q5TAG4 269 aaPredicted RBP22.58■■□□□ 1.21
VPS33A-205ENST00000541169 SAPCD2Q86UD0 394 aa22.58■■□□□ 1.21
VPS33A-205ENST00000541169 HELLSQ9NRZ9 838 aa22.58■■□□□ 1.21
VPS33A-205ENST00000541169 SCAF8Q9UPN6 1271 aaKnown RBP22.58■■□□□ 1.21
VPS33A-205ENST00000541169 AK9Q5TCS8 1911 aa22.58■■□□□ 1.21
VPS33A-205ENST00000541169 TTLL12Q14166 644 aaPredicted RBP22.57■■□□□ 1.2
VPS33A-205ENST00000541169 ZMYM1Q5SVZ6 1142 aa22.57■■□□□ 1.2
VPS33A-205ENST00000541169 TGFBRAP1Q8WUH2 860 aa22.57■■□□□ 1.2
VPS33A-205ENST00000541169 CSRNP1Q96S65 589 aa22.57■■□□□ 1.2
VPS33A-205ENST00000541169 PI4KBQ9UBF8 816 aa22.57■■□□□ 1.2
VPS33A-205ENST00000541169 FLT1P17948 1338 aa22.57■■□□□ 1.2
VPS33A-205ENST00000541169 RASSF10A6NK89 507 aa22.56■■□□□ 1.2
VPS33A-205ENST00000541169 MBD4O95243 580 aa22.56■■□□□ 1.2
VPS33A-205ENST00000541169 MFAP1P55081 439 aaKnown RBP22.56■■□□□ 1.2
VPS33A-205ENST00000541169 DYNLL1P63167 89 aaKnown RBP22.56■■□□□ 1.2
VPS33A-205ENST00000541169 FMR1Q06787 632 aaKnown RBP eCLIP22.56■■□□□ 1.2
VPS33A-205ENST00000541169 PRAMEF18Q5VWM3 479 aa22.56■■□□□ 1.2
VPS33A-205ENST00000541169 GIMAP6Q6P9H5 292 aa22.56■■□□□ 1.2
VPS33A-205ENST00000541169 AMOTL1Q8IY63 956 aa22.56■■□□□ 1.2
VPS33A-205ENST00000541169 DDX4Q9NQI0 724 aaKnown RBP22.56■■□□□ 1.2
VPS33A-205ENST00000541169 CDK5RAP2Q96SN8 1893 aa22.56■■□□□ 1.2
VPS33A-205ENST00000541169 TBC1D12O60347 775 aa22.55■■□□□ 1.2
VPS33A-205ENST00000541169 HLA-DOAP06340 250 aa22.55■■□□□ 1.2
VPS33A-205ENST00000541169 DEFB115Q30KQ5 88 aa22.55■■□□□ 1.2
VPS33A-205ENST00000541169 TTC6Q86TZ1 520 aa22.55■■□□□ 1.2
VPS33A-205ENST00000541169 PUS7LQ9H0K6 701 aaKnown RBP22.55■■□□□ 1.2
VPS33A-205ENST00000541169 HERC5Q9UII4 1024 aaKnown RBP22.55■■□□□ 1.2
VPS33A-205ENST00000541169 ECE1P42892 770 aa22.54■■□□□ 1.2
VPS33A-205ENST00000541169 HUNKP57058 714 aa22.54■■□□□ 1.2
VPS33A-205ENST00000541169 MAP3K10Q02779 954 aa22.54■■□□□ 1.2
VPS33A-205ENST00000541169 DLK2Q6UY11 383 aa22.54■■□□□ 1.2
VPS33A-205ENST00000541169 FOXP4Q8IVH2 680 aaPredicted RBP22.54■■□□□ 1.2
VPS33A-205ENST00000541169 LCORLQ8N3X6 602 aa22.54■■□□□ 1.2
VPS33A-205ENST00000541169 OSBP2Q969R2 916 aa22.54■■□□□ 1.2
VPS33A-205ENST00000541169 STRBPQ96SI9 672 aaKnown RBP22.54■■□□□ 1.2
VPS33A-205ENST00000541169 ZNF341Q9BYN7 854 aa22.54■■□□□ 1.2
VPS33A-205ENST00000541169 SDSP20132 328 aa22.53■■□□□ 1.2
VPS33A-205ENST00000541169 MCMDC2Q4G0Z9 681 aa22.53■■□□□ 1.2
VPS33A-205ENST00000541169 LDLRAD1Q5T700 205 aa22.53■■□□□ 1.2
VPS33A-205ENST00000541169 MAPKAPK5Q8IW41 473 aa22.53■■□□□ 1.2
VPS33A-205ENST00000541169 ANKRD13AQ8IZ07 590 aa22.53■■□□□ 1.2
VPS33A-205ENST00000541169 CCDC102AQ96A19 550 aa22.53■■□□□ 1.2
VPS33A-205ENST00000541169 ARMT1Q9H993 441 aa22.53■■□□□ 1.2
VPS33A-205ENST00000541169 DIAPH3Q9NSV4 1193 aa22.53■■□□□ 1.2
VPS33A-205ENST00000541169 ANGEL1Q9UNK9 670 aaKnown RBP22.53■■□□□ 1.2
VPS33A-205ENST00000541169 SSC5DA1L4H1 1573 aa22.52■■□□□ 1.2
VPS33A-205ENST00000541169 BMP2KLQ5H9B9 411 aa22.52■■□□□ 1.2
VPS33A-205ENST00000541169 NACAP1Q9BZK3 213 aa22.52■■□□□ 1.2
VPS33A-205ENST00000541169 MKRN1Q9UHC7 482 aaKnown RBP22.52■■□□□ 1.2
VPS33A-205ENST00000541169 SLC4A4Q9Y6R1 1079 aa22.52■■□□□ 1.2
VPS33A-205ENST00000541169 DDTLA6NHG4 134 aaPredicted RBP22.51■■□□□ 1.19
VPS33A-205ENST00000541169 GPAA1O43292 621 aa22.51■■□□□ 1.19
VPS33A-205ENST00000541169 USP2O75604 605 aaPredicted RBP22.51■■□□□ 1.19
VPS33A-205ENST00000541169 RGMBQ6NW40 437 aa22.51■■□□□ 1.19
VPS33A-205ENST00000541169 ZFPM1Q8IX07 1006 aa22.51■■□□□ 1.19
VPS33A-205ENST00000541169 RUFY2Q8WXA3 655 aa22.51■■□□□ 1.19
VPS33A-205ENST00000541169 KLRG1Q96E93 195 aa22.51■■□□□ 1.19
VPS33A-205ENST00000541169 TRIM34Q9BYJ4 488 aa22.51■■□□□ 1.19
VPS33A-205ENST00000541169 EHD4Q9H223 541 aa22.51■■□□□ 1.19
VPS33A-205ENST00000541169 DCP1AQ9NPI6 582 aaPredicted RBP22.51■■□□□ 1.19
VPS33A-205ENST00000541169 MYH1P12882 1939 aa22.51■■□□□ 1.19
VPS33A-205ENST00000541169 GSPT1P15170 499 aaKnown RBP22.5■■□□□ 1.19
VPS33A-205ENST00000541169 MAP3K9P80192 1104 aa22.5■■□□□ 1.19
VPS33A-205ENST00000541169 SH3BP5LQ7L8J4 393 aa22.5■■□□□ 1.19
VPS33A-205ENST00000541169 METTL16Q86W50 562 aaKnown RBP22.5■■□□□ 1.19
VPS33A-205ENST00000541169 MCM9Q9NXL9 1143 aa22.5■■□□□ 1.19
VPS33A-205ENST00000541169 ZNF112Q9UJU3 913 aa22.5■■□□□ 1.19
VPS33A-205ENST00000541169 CSADQ9Y600 493 aa22.5■■□□□ 1.19
VPS33A-205ENST00000541169 PATL2C9JE40 543 aaKnown RBP22.49■■□□□ 1.19
VPS33A-205ENST00000541169 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.49■■□□□ 1.19
VPS33A-205ENST00000541169 ARPP21Q9UBL0 812 aaPredicted RBP22.49■■□□□ 1.19
VPS33A-205ENST00000541169 NAV1Q8NEY1 1877 aa22.48■■□□□ 1.19
VPS33A-205ENST00000541169 POLR3DP05423 398 aaPredicted RBP22.48■■□□□ 1.19
VPS33A-205ENST00000541169 SLFNL1Q499Z3 407 aa22.48■■□□□ 1.19
VPS33A-205ENST00000541169 REM2Q8IYK8 340 aaPredicted RBP22.48■■□□□ 1.19
VPS33A-205ENST00000541169 CRACR2BQ8N4Y2 399 aaPredicted RBP22.48■■□□□ 1.19
VPS33A-205ENST00000541169 SLC10A4Q96EP9 437 aa22.48■■□□□ 1.19
VPS33A-205ENST00000541169 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.48■■□□□ 1.19
VPS33A-205ENST00000541169 GINM1Q9NU53 330 aa22.48■■□□□ 1.19
VPS33A-205ENST00000541169 SERPINB13Q9UIV8 391 aa22.48■■□□□ 1.19
VPS33A-205ENST00000541169 PALD1Q9ULE6 856 aa22.48■■□□□ 1.19
VPS33A-205ENST00000541169 RAD50Q92878 1312 aa22.48■■□□□ 1.19
VPS33A-205ENST00000541169 UBE2Q2LH0YL09 131 aa22.47■■□□□ 1.19
VPS33A-205ENST00000541169 M0R2C6 588 aa22.47■■□□□ 1.19
VPS33A-205ENST00000541169 ZNF157P51786 506 aaPredicted RBP22.47■■□□□ 1.19
VPS33A-205ENST00000541169 PRKG1Q13976 671 aa22.47■■□□□ 1.19
VPS33A-205ENST00000541169 MIGA2Q7L4E1 593 aa22.47■■□□□ 1.19
VPS33A-205ENST00000541169 CDAN1Q8IWY9 1227 aa22.47■■□□□ 1.19
VPS33A-205ENST00000541169 SDR42E1Q8WUS8 393 aa22.47■■□□□ 1.19
VPS33A-205ENST00000541169 WRNIP1Q96S55 665 aa22.47■■□□□ 1.19
VPS33A-205ENST00000541169 DDX60LQ5H9U9 1706 aaKnown RBP22.46■■□□□ 1.19
VPS33A-205ENST00000541169 GSG1L2A8MUP6 293 aa22.46■■□□□ 1.19
VPS33A-205ENST00000541169 CTNND1O60716 968 aaKnown RBP22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms