RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 YEATS4O95619 227 aa16.05■□□□□ 0.16
RTN3-210ENST00000540798 ADRA2BP18089 450 aa16.05■□□□□ 0.16
RTN3-210ENST00000540798 CEBPZQ03701 1054 aaKnown RBP16.05■□□□□ 0.16
RTN3-210ENST00000540798 TRAPPC3LQ5T215 181 aa16.05■□□□□ 0.16
RTN3-210ENST00000540798 MYSM1Q5VVJ2 828 aa16.05■□□□□ 0.16
RTN3-210ENST00000540798 NSUN4Q96CB9 384 aaKnown RBP16.05■□□□□ 0.16
RTN3-210ENST00000540798 A0A1W2PQ27 194 aa16.05■□□□□ 0.16
RTN3-210ENST00000540798 A0A1W2PQ64 194 aa16.05■□□□□ 0.16
RTN3-210ENST00000540798 A0A1W2PQD8 194 aa16.05■□□□□ 0.16
RTN3-210ENST00000540798 CCAR1Q8IX12 1150 aaKnown RBP16.05■□□□□ 0.16
RTN3-210ENST00000540798 FAM200AQ8TCP9 573 aa16.05■□□□□ 0.16
RTN3-210ENST00000540798 LRRC4BQ9NT99 713 aa16.05■□□□□ 0.16
RTN3-210ENST00000540798 GOLGA8AA7E2F4 631 aa16.04■□□□□ 0.16
RTN3-210ENST00000540798 RRP9O43818 475 aaKnown RBP16.04■□□□□ 0.16
RTN3-210ENST00000540798 CPLX2Q6PUV4 134 aaKnown RBP16.04■□□□□ 0.16
RTN3-210ENST00000540798 MICU3Q86XE3 530 aa16.04■□□□□ 0.16
RTN3-210ENST00000540798 VPS37DQ86XT2 251 aa16.04■□□□□ 0.16
RTN3-210ENST00000540798 SDR42E1Q8WUS8 393 aa16.04■□□□□ 0.16
RTN3-210ENST00000540798 GJB4Q9NTQ9 266 aa16.04■□□□□ 0.16
RTN3-210ENST00000540798 USP25Q9UHP3 1055 aa16.04■□□□□ 0.16
RTN3-210ENST00000540798 SLC12A7Q9Y666 1083 aa16.04■□□□□ 0.16
RTN3-210ENST00000540798 MYH2Q9UKX2 1941 aa16.04■□□□□ 0.16
RTN3-210ENST00000540798 BRWD3Q6RI45 1802 aa16.04■□□□□ 0.16
RTN3-210ENST00000540798 RXRAP19793 462 aa16.04■□□□□ 0.16
RTN3-210ENST00000540798 HIBADHP31937 336 aaKnown RBP16.04■□□□□ 0.16
RTN3-210ENST00000540798 RFC4P35249 363 aa16.04■□□□□ 0.16
RTN3-210ENST00000540798 ALG1Q9BT22 464 aa16.04■□□□□ 0.16
RTN3-210ENST00000540798 IGSF3O75054 1194 aa16.03■□□□□ 0.16
RTN3-210ENST00000540798 FMNL1O95466 1100 aaPredicted RBP16.03■□□□□ 0.16
RTN3-210ENST00000540798 IFNAR1P17181 557 aa16.03■□□□□ 0.16
RTN3-210ENST00000540798 NFIXQ14938 502 aa16.03■□□□□ 0.16
RTN3-210ENST00000540798 ADALQ6DHV7 355 aa16.03■□□□□ 0.16
RTN3-210ENST00000540798 NFXL1Q6ZNB6 911 aa16.03■□□□□ 0.16
RTN3-210ENST00000540798 SEPT12Q8IYM1 358 aa16.03■□□□□ 0.16
RTN3-210ENST00000540798 TMTC2Q8N394 836 aa16.03■□□□□ 0.16
RTN3-210ENST00000540798 TRPC5Q9UL62 973 aaPredicted RBP16.03■□□□□ 0.16
RTN3-210ENST00000540798 PCDHA7Q9UN72 937 aa16.03■□□□□ 0.16
RTN3-210ENST00000540798 ZKSCAN5Q9Y2L8 839 aa16.03■□□□□ 0.16
RTN3-210ENST00000540798 CCDC69A6NI79 296 aa16.03■□□□□ 0.16
RTN3-210ENST00000540798 CTAGE5O15320 804 aa16.03■□□□□ 0.16
RTN3-210ENST00000540798 FAM160A1Q05DH4 1040 aa16.03■□□□□ 0.16
RTN3-210ENST00000540798 SEC23AQ15436 765 aa16.03■□□□□ 0.16
RTN3-210ENST00000540798 FAM196AQ6ZSG2 479 aa16.03■□□□□ 0.16
RTN3-210ENST00000540798 CKAP2LQ8IYA6 745 aa16.03■□□□□ 0.16
RTN3-210ENST00000540798 CLIC4Q9Y696 253 aa16.03■□□□□ 0.16
RTN3-210ENST00000540798 AP5Z1O43299 807 aa16.03■□□□□ 0.16
RTN3-210ENST00000540798 ADCY5O95622 1261 aa16.03■□□□□ 0.16
RTN3-210ENST00000540798 PCP11498 1178 aaKnown RBP16.03■□□□□ 0.16
RTN3-210ENST00000540798 DYNLL1P63167 89 aaKnown RBP16.03■□□□□ 0.16
RTN3-210ENST00000540798 KCNG4Q8TDN1 519 aa16.03■□□□□ 0.16
RTN3-210ENST00000540798 AIFM3Q96NN9 605 aa16.03■□□□□ 0.16
RTN3-210ENST00000540798 ZNF500O60304 480 aaPredicted RBP16.02■□□□□ 0.16
RTN3-210ENST00000540798 U2AF2P26368 475 aaKnown RBP eCLIP16.02■□□□□ 0.163e-6■■■□□ 15.2
RTN3-210ENST00000540798 IARSP41252 1262 aaKnown RBP16.02■□□□□ 0.16
RTN3-210ENST00000540798 MECOMQ03112 1051 aa16.02■□□□□ 0.16
RTN3-210ENST00000540798 SART3Q15020 963 aaKnown RBP16.02■□□□□ 0.16
RTN3-210ENST00000540798 MEX3CQ5U5Q3 659 aaKnown RBP16.02■□□□□ 0.16
RTN3-210ENST00000540798 KRT40Q6A162 431 aa16.02■□□□□ 0.16
RTN3-210ENST00000540798 PHKBQ93100 1093 aa16.02■□□□□ 0.16
RTN3-210ENST00000540798 MYL10Q9BUA6 226 aa16.02■□□□□ 0.16
RTN3-210ENST00000540798 GRAPQ13588 217 aa16.02■□□□□ 0.15
RTN3-210ENST00000540798 WTAPQ15007 396 aa16.02■□□□□ 0.15
RTN3-210ENST00000540798 NBPF11Q86T75 865 aa16.02■□□□□ 0.15
RTN3-210ENST00000540798 CCDC24Q8N4L8 307 aa16.02■□□□□ 0.15
RTN3-210ENST00000540798 GRAPLQ8TC17 118 aaPredicted RBP16.02■□□□□ 0.15
RTN3-210ENST00000540798 MYH6P13533 1939 aa16.02■□□□□ 0.15
RTN3-210ENST00000540798 FMR1NBQ8N0W7 255 aaPredicted RBP16.01■□□□□ 0.15
RTN3-210ENST00000540798 LRRC37AA6NMS7 1700 aa16.01■□□□□ 0.15
RTN3-210ENST00000540798 POLR3DP05423 398 aaPredicted RBP16.01■□□□□ 0.15
RTN3-210ENST00000540798 C15orf52Q6ZUT6 534 aaKnown RBP16.01■□□□□ 0.15
RTN3-210ENST00000540798 CAVIN2O95810 425 aa16.01■□□□□ 0.15
RTN3-210ENST00000540798 ME1P48163 572 aa16.01■□□□□ 0.15
RTN3-210ENST00000540798 TXNRD3Q86VQ6 643 aa16.01■□□□□ 0.15
RTN3-210ENST00000540798 MRPS27Q92552 414 aaKnown RBP16.01■□□□□ 0.15
RTN3-210ENST00000540798 TFCP2L1Q9NZI6 479 aa16.01■□□□□ 0.15
RTN3-210ENST00000540798 MSNP26038 577 aaKnown RBP16■□□□□ 0.15
RTN3-210ENST00000540798 ANO6Q4KMQ2 910 aa16■□□□□ 0.15
RTN3-210ENST00000540798 ANO1Q5XXA6 986 aa16■□□□□ 0.15
RTN3-210ENST00000540798 CTR9Q6PD62 1173 aa16■□□□□ 0.15
RTN3-210ENST00000540798 CCDC73Q6ZRK6 1079 aa16■□□□□ 0.15
RTN3-210ENST00000540798 CCDC144CPQ8IYA2 1237 aa16■□□□□ 0.15
RTN3-210ENST00000540798 ESR2Q92731 530 aa16■□□□□ 0.15
RTN3-210ENST00000540798 LEMD3Q9Y2U8 911 aa16■□□□□ 0.15
RTN3-210ENST00000540798 LTBP1Q14766 1721 aa16■□□□□ 0.15
RTN3-210ENST00000540798 SSRP1Q08945 709 aaKnown RBP16■□□□□ 0.15
RTN3-210ENST00000540798 RRP12Q5JTH9 1297 aaKnown RBP16■□□□□ 0.15
RTN3-210ENST00000540798 SYNE3Q6ZMZ3 975 aa16■□□□□ 0.15
RTN3-210ENST00000540798 FSIP1Q8NA03 581 aa16■□□□□ 0.15
RTN3-210ENST00000540798 CBX8Q9HC52 389 aa16■□□□□ 0.15
RTN3-210ENST00000540798 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16■□□□□ 0.15
RTN3-210ENST00000540798 SMIM22K7EJ46 135 aa15.99■□□□□ 0.15
RTN3-210ENST00000540798 SPTLC2O15270 562 aa15.99■□□□□ 0.15
RTN3-210ENST00000540798 CRY2Q49AN0 593 aa15.99■□□□□ 0.15
RTN3-210ENST00000540798 WASF1Q92558 559 aa15.99■□□□□ 0.15
RTN3-210ENST00000540798 ZKSCAN3Q9BRR0 538 aa15.99■□□□□ 0.15
RTN3-210ENST00000540798 ERICH2A1L162 156 aa15.99■□□□□ 0.15
RTN3-210ENST00000540798 SLC39A14Q15043 492 aa15.99■□□□□ 0.15
RTN3-210ENST00000540798 PPP2R5BQ15173 497 aa15.99■□□□□ 0.15
RTN3-210ENST00000540798 STK38Q15208 465 aa15.99■□□□□ 0.15
RTN3-210ENST00000540798 RTN1Q16799 776 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms