RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 SPDYE5A6NIY4 337 aa14.41□□□□□ -0.1
SYNE1-238ENST00000540663 APBB1O00213 710 aa14.41□□□□□ -0.1
SYNE1-238ENST00000540663 PPP4CP60510 307 aa14.41□□□□□ -0.1
SYNE1-238ENST00000540663 TTF1Q15361 905 aaPredicted RBP14.41□□□□□ -0.1
SYNE1-238ENST00000540663 IFNL1Q8IU54 200 aa14.41□□□□□ -0.1
SYNE1-238ENST00000540663 ZSCAN29Q8IWY8 852 aaPredicted RBP14.41□□□□□ -0.1
SYNE1-238ENST00000540663 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.41□□□□□ -0.1
SYNE1-238ENST00000540663 PIH1D3Q9NQM4 214 aaKnown RBP14.41□□□□□ -0.1
SYNE1-238ENST00000540663 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.41□□□□□ -0.1
SYNE1-238ENST00000540663 SNCAIPQ9Y6H5 919 aa14.41□□□□□ -0.1
SYNE1-238ENST00000540663 ATRNL1Q5VV63 1379 aa14.41□□□□□ -0.1
SYNE1-238ENST00000540663 DOCK2Q92608 1830 aa14.41□□□□□ -0.1
SYNE1-238ENST00000540663 GTF2A2P52657 109 aa14.4□□□□□ -0.1
SYNE1-238ENST00000540663 MAP3K10Q02779 954 aa14.4□□□□□ -0.1
SYNE1-238ENST00000540663 MAP3K12Q12852 859 aa14.4□□□□□ -0.1
SYNE1-238ENST00000540663 PPIL2Q13356 520 aa14.4□□□□□ -0.1
SYNE1-238ENST00000540663 PICALMQ13492 652 aa14.4□□□□□ -0.1
SYNE1-238ENST00000540663 NOL9Q5SY16 702 aaKnown RBP14.4□□□□□ -0.1
SYNE1-238ENST00000540663 MIGA2Q7L4E1 593 aa14.4□□□□□ -0.1
SYNE1-238ENST00000540663 ZFPM1Q8IX07 1006 aa14.4□□□□□ -0.1
SYNE1-238ENST00000540663 TEX11Q8IYF3 940 aa14.4□□□□□ -0.1
SYNE1-238ENST00000540663 LRRCC1Q9C099 1032 aa14.4□□□□□ -0.1
SYNE1-238ENST00000540663 DDX4Q9NQI0 724 aaKnown RBP14.4□□□□□ -0.1
SYNE1-238ENST00000540663 AK9Q5TCS8 1911 aa14.4□□□□□ -0.1
SYNE1-238ENST00000540663 IDH1O75874 414 aaKnown RBP14.39□□□□□ -0.11
SYNE1-238ENST00000540663 PPATQ06203 517 aa14.39□□□□□ -0.11
SYNE1-238ENST00000540663 SH3BP5LQ7L8J4 393 aa14.39□□□□□ -0.11
SYNE1-238ENST00000540663 ZKSCAN4Q969J2 545 aaPredicted RBP14.39□□□□□ -0.11
SYNE1-238ENST00000540663 OTUD5Q96G74 571 aa14.39□□□□□ -0.11
SYNE1-238ENST00000540663 MS4A4AQ96JQ5 239 aa14.39□□□□□ -0.11
SYNE1-238ENST00000540663 CASP8AP2Q9UKL3 1982 aa14.38□□□□□ -0.11
SYNE1-238ENST00000540663 DDTLA6NHG4 134 aaPredicted RBP14.38□□□□□ -0.11
SYNE1-238ENST00000540663 IGF2BP3O00425 579 aaKnown RBP eCLIP14.38□□□□□ -0.11
SYNE1-238ENST00000540663 TBC1D12O60347 775 aa14.38□□□□□ -0.11
SYNE1-238ENST00000540663 INPP5BP32019 993 aa14.38□□□□□ -0.11
SYNE1-238ENST00000540663 SNAPC2Q13487 334 aa14.38□□□□□ -0.11
SYNE1-238ENST00000540663 SH3RF3Q8TEJ3 882 aaPredicted RBP14.38□□□□□ -0.11
SYNE1-238ENST00000540663 OSBPL5Q9H0X9 879 aaPredicted RBP14.38□□□□□ -0.11
SYNE1-238ENST00000540663 DCTPP1Q9H773 170 aa14.38□□□□□ -0.11
SYNE1-238ENST00000540663 PHF20L1A8MW92 1017 aa14.37□□□□□ -0.11
SYNE1-238ENST00000540663 GPR25O00155 361 aa14.37□□□□□ -0.11
SYNE1-238ENST00000540663 TBC1D8O95759 1140 aa14.37□□□□□ -0.11
SYNE1-238ENST00000540663 CETPP11597 493 aa14.37□□□□□ -0.11
SYNE1-238ENST00000540663 ATP5JP18859 108 aa14.37□□□□□ -0.11
SYNE1-238ENST00000540663 CYP7A1P22680 504 aa14.37□□□□□ -0.11
SYNE1-238ENST00000540663 AAMPQ13685 434 aa14.37□□□□□ -0.11
SYNE1-238ENST00000540663 CNKSR2Q8WXI2 1034 aa14.37□□□□□ -0.11
SYNE1-238ENST00000540663 DHX36Q9H2U1 1008 aaKnown RBP14.37□□□□□ -0.11
SYNE1-238ENST00000540663 ZCCHC17Q9NP64 241 aaKnown RBP14.37□□□□□ -0.11
SYNE1-238ENST00000540663 AATFQ9NY61 560 aaKnown RBP eCLIP14.37□□□□□ -0.11
SYNE1-238ENST00000540663 CCL15-CCL14A0A0B4J2E2 113 aa14.36□□□□□ -0.11
SYNE1-238ENST00000540663 CTNND1O60716 968 aaKnown RBP14.36□□□□□ -0.11
SYNE1-238ENST00000540663 CCL15Q16663 113 aa14.36□□□□□ -0.11
SYNE1-238ENST00000540663 ADGRA1Q86SQ6 560 aa14.36□□□□□ -0.11
SYNE1-238ENST00000540663 SCYL3Q8IZE3 742 aa14.36□□□□□ -0.11
SYNE1-238ENST00000540663 MAGEB6Q8N7X4 407 aa14.36□□□□□ -0.11
SYNE1-238ENST00000540663 BRI3BPQ8WY22 251 aa14.36□□□□□ -0.11
SYNE1-238ENST00000540663 PTPN18Q99952 460 aa14.36□□□□□ -0.11
SYNE1-238ENST00000540663 ANTXR1Q9H6X2 564 aa14.36□□□□□ -0.11
SYNE1-238ENST00000540663 PICK1Q9NRD5 415 aa14.36□□□□□ -0.11
SYNE1-238ENST00000540663 HERC5Q9UII4 1024 aaKnown RBP14.36□□□□□ -0.11
SYNE1-238ENST00000540663 MYO5AQ9Y4I1 1855 aaKnown RBP14.35□□□□□ -0.11
SYNE1-238ENST00000540663 IRF6O14896 467 aa14.35□□□□□ -0.11
SYNE1-238ENST00000540663 FKTNO75072 461 aa14.35□□□□□ -0.11
SYNE1-238ENST00000540663 DGKZQ13574 1117 aa14.35□□□□□ -0.11
SYNE1-238ENST00000540663 CTU1Q7Z7A3 348 aaKnown RBP14.35□□□□□ -0.11
SYNE1-238ENST00000540663 ZNF296Q8WUU4 475 aaPredicted RBP14.35□□□□□ -0.11
SYNE1-238ENST00000540663 ABHD8Q96I13 439 aa14.35□□□□□ -0.11
SYNE1-238ENST00000540663 DNAJC2Q99543 621 aaKnown RBP14.35□□□□□ -0.11
SYNE1-238ENST00000540663 HAUS7Q99871 368 aa14.35□□□□□ -0.11
SYNE1-238ENST00000540663 KCNH4Q9UQ05 1017 aa14.35□□□□□ -0.11
SYNE1-238ENST00000540663 NDUFB9Q9Y6M9 179 aa14.35□□□□□ -0.11
SYNE1-238ENST00000540663 FLT1P17948 1338 aa14.35□□□□□ -0.11
SYNE1-238ENST00000540663 FOCADQ5VW36 1801 aa14.34□□□□□ -0.11
SYNE1-238ENST00000540663 GOLIM4O00461 696 aa14.34□□□□□ -0.11
SYNE1-238ENST00000540663 CXCL11O14625 94 aa14.34□□□□□ -0.11
SYNE1-238ENST00000540663 PDE6AP16499 860 aa14.34□□□□□ -0.11
SYNE1-238ENST00000540663 TGFBRAP1Q8WUH2 860 aa14.34□□□□□ -0.11
SYNE1-238ENST00000540663 GPATCH3Q96I76 525 aa14.34□□□□□ -0.11
SYNE1-238ENST00000540663 MCOLN1Q9GZU1 580 aa14.34□□□□□ -0.11
SYNE1-238ENST00000540663 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.34□□□□□ -0.11
SYNE1-238ENST00000540663 PAG1Q9NWQ8 432 aa14.34□□□□□ -0.11
SYNE1-238ENST00000540663 PI4KBQ9UBF8 816 aa14.34□□□□□ -0.11
SYNE1-238ENST00000540663 PCDHB15Q9Y5E8 787 aa14.34□□□□□ -0.11
SYNE1-238ENST00000540663 SMARCA5O60264 1052 aaPredicted RBP14.33□□□□□ -0.12
SYNE1-238ENST00000540663 CRHR2Q13324 411 aa14.33□□□□□ -0.12
SYNE1-238ENST00000540663 PKN2Q16513 984 aaKnown RBP14.33□□□□□ -0.12
SYNE1-238ENST00000540663 SLC9C2Q5TAH2 1124 aa14.33□□□□□ -0.12
SYNE1-238ENST00000540663 METTL16Q86W50 562 aaKnown RBP14.33□□□□□ -0.12
SYNE1-238ENST00000540663 MAPKAPK5Q8IW41 473 aa14.33□□□□□ -0.12
SYNE1-238ENST00000540663 CRBNQ96SW2 442 aa14.33□□□□□ -0.12
SYNE1-238ENST00000540663 TBC1D2Q9BYX2 928 aa14.33□□□□□ -0.12
SYNE1-238ENST00000540663 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.33□□□□□ -0.12
SYNE1-238ENST00000540663 BCL11AQ9H165 835 aa14.33□□□□□ -0.12
SYNE1-238ENST00000540663 R3HDMLQ9H3Y0 253 aa14.33□□□□□ -0.12
SYNE1-238ENST00000540663 ZFYVE28Q9HCC9 887 aa14.33□□□□□ -0.12
SYNE1-238ENST00000540663 ECHDC1Q9NTX5 307 aa14.33□□□□□ -0.12
SYNE1-238ENST00000540663 DOCK1Q14185 1865 aa14.32□□□□□ -0.12
SYNE1-238ENST00000540663 CDK5RAP2Q96SN8 1893 aa14.32□□□□□ -0.12
SYNE1-238ENST00000540663 HLA-DOAP06340 250 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms