RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 NBPF15Q8N660 670 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 SENP2Q9HC62 589 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 INTS13Q9NVM9 706 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 SERTAD1Q9UHV2 236 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 ARHGAP23Q9P227 1491 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 FOXP2O15409 715 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 CYP27B1O15528 508 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 ATP8B1O43520 1251 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 SSRP1Q08945 709 aaKnown RBP12.88□□□□□ -0.35
SYNE1-237ENST00000539504 MTF1Q14872 753 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 POSTNQ15063 836 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 PTPAQ15257 358 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 METTL24Q5JXM2 366 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 CYB5R4Q7L1T6 521 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 MAN1B1Q9UKM7 699 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 MRFAP1Q9Y605 127 aa12.88□□□□□ -0.35
SYNE1-237ENST00000539504 LMO7Q8WWI1 1683 aa12.87□□□□□ -0.35
SYNE1-237ENST00000539504 CCDC175P0C221 793 aa12.87□□□□□ -0.35
SYNE1-237ENST00000539504 STX17P56962 302 aa12.87□□□□□ -0.35
SYNE1-237ENST00000539504 FBXL16Q8N461 479 aa12.87□□□□□ -0.35
SYNE1-237ENST00000539504 SAMSN1Q9NSI8 373 aaKnown RBP12.87□□□□□ -0.35
SYNE1-237ENST00000539504 FMR1Q06787 632 aaKnown RBP eCLIP12.87□□□□□ -0.35
SYNE1-237ENST00000539504 KIF4BQ2VIQ3 1234 aa12.87□□□□□ -0.35
SYNE1-237ENST00000539504 TBC1D10CQ8IV04 446 aa12.87□□□□□ -0.35
SYNE1-237ENST00000539504 TC2NQ8N9U0 490 aa12.87□□□□□ -0.35
SYNE1-237ENST00000539504 CCDC191Q8NCU4 936 aa12.87□□□□□ -0.35
SYNE1-237ENST00000539504 RABGGTAQ92696 567 aa12.87□□□□□ -0.35
SYNE1-237ENST00000539504 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.87□□□□□ -0.35
SYNE1-237ENST00000539504 RAI14Q9P0K7 980 aa12.87□□□□□ -0.35
SYNE1-237ENST00000539504 KCNJ14Q9UNX9 436 aa12.87□□□□□ -0.35
SYNE1-237ENST00000539504 SLC12A7Q9Y666 1083 aa12.87□□□□□ -0.35
SYNE1-237ENST00000539504 BTBD18B2RXH4 712 aa12.86□□□□□ -0.35
SYNE1-237ENST00000539504 IFIT3O14879 490 aaKnown RBP12.86□□□□□ -0.35
SYNE1-237ENST00000539504 KIF5CO60282 957 aa12.86□□□□□ -0.35
SYNE1-237ENST00000539504 RAD51AP2Q09MP3 1159 aa12.86□□□□□ -0.35
SYNE1-237ENST00000539504 ZSCAN26Q16670 478 aa12.86□□□□□ -0.35
SYNE1-237ENST00000539504 LONRF2Q1L5Z9 754 aa12.86□□□□□ -0.35
SYNE1-237ENST00000539504 CABLES1Q8TDN4 633 aa12.86□□□□□ -0.35
SYNE1-237ENST00000539504 TRIM34Q9BYJ4 488 aa12.86□□□□□ -0.35
SYNE1-237ENST00000539504 INCENPQ9NQS7 918 aa12.86□□□□□ -0.35
SYNE1-237ENST00000539504 PRR29P0C7W0 189 aa12.86□□□□□ -0.35
SYNE1-237ENST00000539504 BMP6P22004 513 aa12.86□□□□□ -0.35
SYNE1-237ENST00000539504 CHMP4BP1P59074 171 aa12.86□□□□□ -0.35
SYNE1-237ENST00000539504 JAKMIP3Q5VZ66 844 aa12.86□□□□□ -0.35
SYNE1-237ENST00000539504 TMEM139Q8IV31 216 aa12.86□□□□□ -0.35
SYNE1-237ENST00000539504 NUTM2AQ8IVF1 878 aaPredicted RBP12.86□□□□□ -0.35
SYNE1-237ENST00000539504 SOWAHDA6NJG2 315 aa12.86□□□□□ -0.35
SYNE1-237ENST00000539504 IFIT5Q13325 482 aaKnown RBP12.86□□□□□ -0.35
SYNE1-237ENST00000539504 FAM89AQ96GI7 184 aa12.86□□□□□ -0.35
SYNE1-237ENST00000539504 MARF1Q9Y4F3 1742 aaKnown RBP12.86□□□□□ -0.35
SYNE1-237ENST00000539504 AKR1B15C9JRZ8 316 aaPredicted RBP12.85□□□□□ -0.35
SYNE1-237ENST00000539504 SH2B2O14492 632 aaPredicted RBP12.85□□□□□ -0.35
SYNE1-237ENST00000539504 MYO1BO43795 1136 aa12.85□□□□□ -0.35
SYNE1-237ENST00000539504 CIAO1O76071 339 aa12.85□□□□□ -0.35
SYNE1-237ENST00000539504 CWC15Q9P013 229 aaKnown RBP12.85□□□□□ -0.35
SYNE1-237ENST00000539504 ABCC6O95255 1503 aa12.85□□□□□ -0.35
SYNE1-237ENST00000539504 CAPN2P17655 700 aa12.85□□□□□ -0.35
SYNE1-237ENST00000539504 TXLNAP40222 546 aa12.85□□□□□ -0.35
SYNE1-237ENST00000539504 AFMP43652 599 aa12.85□□□□□ -0.35
SYNE1-237ENST00000539504 GRIN1Q05586 938 aa12.85□□□□□ -0.35
SYNE1-237ENST00000539504 ZNF569Q5MCW4 686 aa12.85□□□□□ -0.35
SYNE1-237ENST00000539504 DIS3L2Q8IYB7 885 aaKnown RBP12.85□□□□□ -0.35
SYNE1-237ENST00000539504 MLKLQ8NB16 471 aa12.85□□□□□ -0.35
SYNE1-237ENST00000539504 MAP3K14Q99558 947 aa12.85□□□□□ -0.35
SYNE1-237ENST00000539504 MRPL44Q9H9J2 332 aaKnown RBP12.85□□□□□ -0.35
SYNE1-237ENST00000539504 VPS18Q9P253 973 aa12.85□□□□□ -0.35
SYNE1-237ENST00000539504 TRIM22Q8IYM9 498 aa12.85□□□□□ -0.35
SYNE1-237ENST00000539504 AIDAQ96BJ3 306 aa12.85□□□□□ -0.35
SYNE1-237ENST00000539504 CNNM1Q9NRU3 951 aa12.85□□□□□ -0.35
SYNE1-237ENST00000539504 RHOXF2BP0C7M4 288 aa12.84□□□□□ -0.35
SYNE1-237ENST00000539504 TICAM2Q86XR7 235 aa12.84□□□□□ -0.35
SYNE1-237ENST00000539504 NOSTRINQ8IVI9 506 aa12.84□□□□□ -0.35
SYNE1-237ENST00000539504 IGSF22Q8N9C0 903 aa12.84□□□□□ -0.35
SYNE1-237ENST00000539504 NUP133Q8WUM0 1156 aa12.84□□□□□ -0.35
SYNE1-237ENST00000539504 RHOXF2Q9BQY4 288 aa12.84□□□□□ -0.35
SYNE1-237ENST00000539504 LDHAL6AQ6ZMR3 332 aa12.84□□□□□ -0.35
SYNE1-237ENST00000539504 CMTR1Q8N1G2 835 aaKnown RBP12.84□□□□□ -0.35
SYNE1-237ENST00000539504 NKX2-3Q8TAU0 364 aa12.84□□□□□ -0.35
SYNE1-237ENST00000539504 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.84□□□□□ -0.35
SYNE1-237ENST00000539504 TBC1D2BQ9UPU7 963 aa12.84□□□□□ -0.35
SYNE1-237ENST00000539504 C10orf67Q8IYJ2 551 aa12.84□□□□□ -0.35
SYNE1-237ENST00000539504 ZKSCAN3Q9BRR0 538 aa12.84□□□□□ -0.35
SYNE1-237ENST00000539504 FUT8Q9BYC5 575 aa12.84□□□□□ -0.35
SYNE1-237ENST00000539504 ADAM21Q9UKJ8 722 aa12.84□□□□□ -0.35
SYNE1-237ENST00000539504 CPDO75976 1380 aa12.84□□□□□ -0.35
SYNE1-237ENST00000539504 TEX33O43247 280 aa12.83□□□□□ -0.35
SYNE1-237ENST00000539504 RANBP6O60518 1105 aaKnown RBP12.83□□□□□ -0.35
SYNE1-237ENST00000539504 LEKR1Q6ZMV7 388 aa12.83□□□□□ -0.35
SYNE1-237ENST00000539504 RSRC2Q7L4I2 434 aaKnown RBP12.83□□□□□ -0.35
SYNE1-237ENST00000539504 ENOX1Q8TC92 643 aaKnown RBP12.83□□□□□ -0.35
SYNE1-237ENST00000539504 DDX17Q92841 729 aaKnown RBP12.83□□□□□ -0.35
SYNE1-237ENST00000539504 TSPYL1Q9H0U9 437 aa12.83□□□□□ -0.35
SYNE1-237ENST00000539504 PDE11AQ9HCR9 933 aa12.83□□□□□ -0.35
SYNE1-237ENST00000539504 UBN2Q6ZU65 1347 aa12.83□□□□□ -0.36
SYNE1-237ENST00000539504 ERLIN1O75477 346 aa12.83□□□□□ -0.36
SYNE1-237ENST00000539504 TBX2Q13207 712 aaPredicted RBP12.83□□□□□ -0.36
SYNE1-237ENST00000539504 FILIP1LQ4L180 1135 aa12.83□□□□□ -0.36
SYNE1-237ENST00000539504 CCDC102AQ96A19 550 aa12.83□□□□□ -0.36
SYNE1-237ENST00000539504 CCDC151A5D8V7 595 aa12.83□□□□□ -0.36
SYNE1-237ENST00000539504 CTDSPL2Q05D32 466 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms