RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 KIAA0825Q8IV33 1275 aa12.69□□□□□ -0.38
LEMD3-202ENST00000539442 IFNL3Q8IZI9 196 aa12.69□□□□□ -0.38
LEMD3-202ENST00000539442 DDRGK1Q96HY6 314 aa12.69□□□□□ -0.38
LEMD3-202ENST00000539442 NAPBQ9H115 298 aa12.69□□□□□ -0.38
LEMD3-202ENST00000539442 EPB41L4AQ9HCS5 686 aaPredicted RBP12.69□□□□□ -0.38
LEMD3-202ENST00000539442 ATP8A2Q9NTI2 1148 aa12.69□□□□□ -0.38
LEMD3-202ENST00000539442 PALD1Q9ULE6 856 aa12.69□□□□□ -0.38
LEMD3-202ENST00000539442 SNX14Q9Y5W7 946 aa12.69□□□□□ -0.38
LEMD3-202ENST00000539442 PRKAB2O43741 272 aa12.68□□□□□ -0.38
LEMD3-202ENST00000539442 GRIN3BO60391 1043 aa12.68□□□□□ -0.38
LEMD3-202ENST00000539442 CYP21A2P08686 494 aa12.68□□□□□ -0.38
LEMD3-202ENST00000539442 TDO2P48775 406 aa12.68□□□□□ -0.38
LEMD3-202ENST00000539442 SCNN1DP51172 638 aa12.68□□□□□ -0.38
LEMD3-202ENST00000539442 RASEFQ8IZ41 740 aa12.68□□□□□ -0.38
LEMD3-202ENST00000539442 OGFOD1Q8N543 542 aa12.68□□□□□ -0.38
LEMD3-202ENST00000539442 TM6SF1Q9BZW5 370 aa12.68□□□□□ -0.38
LEMD3-202ENST00000539442 MYH2Q9UKX2 1941 aa12.68□□□□□ -0.38
LEMD3-202ENST00000539442 ZNF213O14771 459 aa12.67□□□□□ -0.38
LEMD3-202ENST00000539442 PSMA5P28066 241 aa12.67□□□□□ -0.38
LEMD3-202ENST00000539442 RHBDL3P58872 404 aa12.67□□□□□ -0.38
LEMD3-202ENST00000539442 SH3RF3Q8TEJ3 882 aaPredicted RBP12.67□□□□□ -0.38
LEMD3-202ENST00000539442 SDR42E1Q8WUS8 393 aa12.67□□□□□ -0.38
LEMD3-202ENST00000539442 USP17L8P0C7I0 530 aa12.66□□□□□ -0.38
LEMD3-202ENST00000539442 USP5P45974 858 aa12.66□□□□□ -0.38
LEMD3-202ENST00000539442 GPR162Q16538 588 aa12.66□□□□□ -0.38
LEMD3-202ENST00000539442 APOBEC3HQ6NTF7 200 aaKnown RBP12.66□□□□□ -0.38
LEMD3-202ENST00000539442 TEX11Q8IYF3 940 aa12.66□□□□□ -0.38
LEMD3-202ENST00000539442 MTMR14Q8NCE2 650 aa12.66□□□□□ -0.38
LEMD3-202ENST00000539442 DPF2Q92785 391 aa12.66□□□□□ -0.38
LEMD3-202ENST00000539442 DCP1AQ9NPI6 582 aaPredicted RBP12.66□□□□□ -0.38
LEMD3-202ENST00000539442 ARPP21Q9UBL0 812 aaPredicted RBP12.66□□□□□ -0.38
LEMD3-202ENST00000539442 MKRN1Q9UHC7 482 aaKnown RBP12.66□□□□□ -0.38
LEMD3-202ENST00000539442 DICER1Q9UPY3 1922 aaKnown RBP12.65□□□□□ -0.38
LEMD3-202ENST00000539442 HMGB1P09429 215 aaKnown RBP12.65□□□□□ -0.38
LEMD3-202ENST00000539442 TIE1P35590 1138 aa12.65□□□□□ -0.38
LEMD3-202ENST00000539442 RBM5P52756 815 aaKnown RBP eCLIP12.65□□□□□ -0.38
LEMD3-202ENST00000539442 CFAP100Q494V2 611 aa12.65□□□□□ -0.38
LEMD3-202ENST00000539442 SBK1Q52WX2 424 aa12.65□□□□□ -0.38
LEMD3-202ENST00000539442 GPC2Q8N158 579 aa12.65□□□□□ -0.38
LEMD3-202ENST00000539442 RNF181Q9P0P0 153 aa12.65□□□□□ -0.38
LEMD3-202ENST00000539442 ANAPC4Q9UJX5 808 aa12.65□□□□□ -0.38
LEMD3-202ENST00000539442 COLQQ9Y215 455 aaPredicted RBP12.65□□□□□ -0.38
LEMD3-202ENST00000539442 ZNF541Q9H0D2 1346 aa12.64□□□□□ -0.39
LEMD3-202ENST00000539442 ZC3H4Q9UPT8 1303 aaKnown RBP12.64□□□□□ -0.39
LEMD3-202ENST00000539442 E7EWF7 191 aa12.64□□□□□ -0.39
LEMD3-202ENST00000539442 SNPHO15079 494 aa12.64□□□□□ -0.39
LEMD3-202ENST00000539442 PCP11498 1178 aaKnown RBP12.64□□□□□ -0.39
LEMD3-202ENST00000539442 ZNF280AP59817 542 aaPredicted RBP12.64□□□□□ -0.39
LEMD3-202ENST00000539442 DLGAP5Q15398 846 aa12.64□□□□□ -0.39
LEMD3-202ENST00000539442 ADCK5Q3MIX3 580 aa12.64□□□□□ -0.39
LEMD3-202ENST00000539442 CDC42EP5Q6NZY7 148 aa12.64□□□□□ -0.39
LEMD3-202ENST00000539442 CTR9Q6PD62 1173 aa12.64□□□□□ -0.39
LEMD3-202ENST00000539442 AMOTL1Q8IY63 956 aa12.64□□□□□ -0.39
LEMD3-202ENST00000539442 TGFBRAP1Q8WUH2 860 aa12.64□□□□□ -0.39
LEMD3-202ENST00000539442 SNX21Q969T3 373 aa12.64□□□□□ -0.39
LEMD3-202ENST00000539442 JAKMIP1Q96N16 626 aaKnown RBP12.64□□□□□ -0.39
LEMD3-202ENST00000539442 NEK1Q96PY6 1258 aa12.64□□□□□ -0.39
LEMD3-202ENST00000539442 ZSWIM6Q9HCJ5 1215 aa12.64□□□□□ -0.39
LEMD3-202ENST00000539442 USP40Q9NVE5 1235 aa12.64□□□□□ -0.39
LEMD3-202ENST00000539442 TIAM2Q8IVF5 1701 aa12.64□□□□□ -0.39
LEMD3-202ENST00000539442 LAMA4Q16363 1823 aa12.64□□□□□ -0.39
LEMD3-202ENST00000539442 FLT1P17948 1338 aa12.63□□□□□ -0.39
LEMD3-202ENST00000539442 SBF1O95248 1867 aa12.63□□□□□ -0.39
LEMD3-202ENST00000539442 SPDYE4A6NLX3 237 aa12.63□□□□□ -0.39
LEMD3-202ENST00000539442 WDHD1O75717 1129 aaPredicted RBP12.63□□□□□ -0.39
LEMD3-202ENST00000539442 CASTP20810 708 aaKnown RBP12.63□□□□□ -0.39
LEMD3-202ENST00000539442 NT5C2P49902 561 aa12.63□□□□□ -0.39
LEMD3-202ENST00000539442 GMPSP49915 693 aaPredicted RBP12.63□□□□□ -0.39
LEMD3-202ENST00000539442 HAND2P61296 217 aa12.63□□□□□ -0.39
LEMD3-202ENST00000539442 PPARAQ07869 468 aa12.63□□□□□ -0.39
LEMD3-202ENST00000539442 C9orf131Q5VYM1 1079 aa12.63□□□□□ -0.39
LEMD3-202ENST00000539442 BLOC1S2Q6QNY1 142 aa12.63□□□□□ -0.39
LEMD3-202ENST00000539442 STAG1Q8WVM7 1258 aa12.63□□□□□ -0.39
LEMD3-202ENST00000539442 IDI2Q9BXS1 227 aa12.63□□□□□ -0.39
LEMD3-202ENST00000539442 RNF41Q9H4P4 317 aaPredicted RBP12.63□□□□□ -0.39
LEMD3-202ENST00000539442 MCM9Q9NXL9 1143 aa12.63□□□□□ -0.39
LEMD3-202ENST00000539442 CYP46A1Q9Y6A2 500 aa12.63□□□□□ -0.39
LEMD3-202ENST00000539442 GJA3Q9Y6H8 435 aa12.63□□□□□ -0.39
LEMD3-202ENST00000539442 TAF6LQ9Y6J9 622 aa12.63□□□□□ -0.39
LEMD3-202ENST00000539442 ROBO3Q96MS0 1386 aa12.62□□□□□ -0.39
LEMD3-202ENST00000539442 USP17L12C9JPN9 530 aa12.62□□□□□ -0.39
LEMD3-202ENST00000539442 USP17L21D6R901 530 aa12.62□□□□□ -0.39
LEMD3-202ENST00000539442 SLC3A2P08195 630 aaKnown RBP12.62□□□□□ -0.39
LEMD3-202ENST00000539442 MCM2P49736 904 aa12.62□□□□□ -0.39
LEMD3-202ENST00000539442 NEK4P51957 841 aa12.62□□□□□ -0.39
LEMD3-202ENST00000539442 TRDNQ13061 729 aa12.62□□□□□ -0.39
LEMD3-202ENST00000539442 BECN1Q14457 450 aa12.62□□□□□ -0.39
LEMD3-202ENST00000539442 AKNAD1Q5T1N1 836 aa12.62□□□□□ -0.39
LEMD3-202ENST00000539442 STOX1Q6ZVD7 989 aa12.62□□□□□ -0.39
LEMD3-202ENST00000539442 RUFY3Q7L099 469 aa12.62□□□□□ -0.39
LEMD3-202ENST00000539442 MAPKAPK5Q8IW41 473 aa12.62□□□□□ -0.39
LEMD3-202ENST00000539442 NCOA7Q8NI08 942 aa12.62□□□□□ -0.39
LEMD3-202ENST00000539442 ZBED3Q96IU2 234 aaPredicted RBP12.62□□□□□ -0.39
LEMD3-202ENST00000539442 UPF3BQ9BZI7 483 aaKnown RBP12.62□□□□□ -0.39
LEMD3-202ENST00000539442 NBPF3Q9H094 633 aa12.62□□□□□ -0.39
LEMD3-202ENST00000539442 CNNM2Q9H8M5 875 aa12.62□□□□□ -0.39
LEMD3-202ENST00000539442 MYOZ2Q9NPC6 264 aa12.62□□□□□ -0.39
LEMD3-202ENST00000539442 TMOD2Q9NZR1 351 aa12.62□□□□□ -0.39
LEMD3-202ENST00000539442 DDX60LQ5H9U9 1706 aaKnown RBP12.62□□□□□ -0.39
LEMD3-202ENST00000539442 ADAMTSL1Q8N6G6 1762 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms