RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 NOL10Q9BSC4 688 aaKnown RBP23.22■■□□□ 1.31
CLIP1-211ENST00000539080 BAG3O95817 575 aa23.21■■□□□ 1.31
CLIP1-211ENST00000539080 GTF2A2P52657 109 aa23.21■■□□□ 1.31
CLIP1-211ENST00000539080 TMED8Q6PL24 325 aaPredicted RBP23.21■■□□□ 1.31
CLIP1-211ENST00000539080 ZKSCAN4Q969J2 545 aaPredicted RBP23.21■■□□□ 1.31
CLIP1-211ENST00000539080 IL1RAPL2Q9NP60 686 aa23.21■■□□□ 1.31
CLIP1-211ENST00000539080 DDX4Q9NQI0 724 aaKnown RBP23.21■■□□□ 1.31
CLIP1-211ENST00000539080 ATRNL1Q5VV63 1379 aa23.21■■□□□ 1.31
CLIP1-211ENST00000539080 COL2A1P02458 1487 aaPredicted RBP23.21■■□□□ 1.31
CLIP1-211ENST00000539080 IGF2BP3O00425 579 aaKnown RBP eCLIP23.2■■□□□ 1.3
CLIP1-211ENST00000539080 PLCG2P16885 1265 aa23.2■■□□□ 1.3
CLIP1-211ENST00000539080 MAP3K10Q02779 954 aa23.2■■□□□ 1.3
CLIP1-211ENST00000539080 ZSCAN29Q8IWY8 852 aaPredicted RBP23.2■■□□□ 1.3
CLIP1-211ENST00000539080 OTUD5Q96G74 571 aa23.2■■□□□ 1.3
CLIP1-211ENST00000539080 ABHD8Q96I13 439 aa23.2■■□□□ 1.3
CLIP1-211ENST00000539080 MS4A4AQ96JQ5 239 aa23.2■■□□□ 1.3
CLIP1-211ENST00000539080 GPR25O00155 361 aa23.19■■□□□ 1.3
CLIP1-211ENST00000539080 PPATQ06203 517 aa23.19■■□□□ 1.3
CLIP1-211ENST00000539080 PICALMQ13492 652 aa23.19■■□□□ 1.3
CLIP1-211ENST00000539080 DGKZQ13574 1117 aa23.19■■□□□ 1.3
CLIP1-211ENST00000539080 NOL9Q5SY16 702 aaKnown RBP23.19■■□□□ 1.3
CLIP1-211ENST00000539080 SH3BP5LQ7L8J4 393 aa23.19■■□□□ 1.3
CLIP1-211ENST00000539080 CNKSR2Q8WXI2 1034 aa23.19■■□□□ 1.3
CLIP1-211ENST00000539080 MCOLN1Q9GZU1 580 aa23.19■■□□□ 1.3
CLIP1-211ENST00000539080 MYO5AQ9Y4I1 1855 aaKnown RBP23.19■■□□□ 1.3
CLIP1-211ENST00000539080 IFIT2P09913 472 aaKnown RBP23.18■■□□□ 1.3
CLIP1-211ENST00000539080 INPP5BP32019 993 aa23.18■■□□□ 1.3
CLIP1-211ENST00000539080 PPP4CP60510 307 aa23.18■■□□□ 1.3
CLIP1-211ENST00000539080 PPIL2Q13356 520 aa23.18■■□□□ 1.3
CLIP1-211ENST00000539080 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.18■■□□□ 1.3
CLIP1-211ENST00000539080 ZNF296Q8WUU4 475 aaPredicted RBP23.18■■□□□ 1.3
CLIP1-211ENST00000539080 PIH1D3Q9NQM4 214 aaKnown RBP23.18■■□□□ 1.3
CLIP1-211ENST00000539080 DDTLA6NHG4 134 aaPredicted RBP23.17■■□□□ 1.3
CLIP1-211ENST00000539080 APBB1O00213 710 aa23.17■■□□□ 1.3
CLIP1-211ENST00000539080 CAPN15O75808 1086 aa23.17■■□□□ 1.3
CLIP1-211ENST00000539080 CERS3Q8IU89 383 aa23.17■■□□□ 1.3
CLIP1-211ENST00000539080 PTPN18Q99952 460 aa23.17■■□□□ 1.3
CLIP1-211ENST00000539080 CCL15-CCL14A0A0B4J2E2 113 aa23.16■■□□□ 1.3
CLIP1-211ENST00000539080 CETPP11597 493 aa23.16■■□□□ 1.3
CLIP1-211ENST00000539080 SNAPC2Q13487 334 aa23.16■■□□□ 1.3
CLIP1-211ENST00000539080 CCL15Q16663 113 aa23.16■■□□□ 1.3
CLIP1-211ENST00000539080 CTU1Q7Z7A3 348 aaKnown RBP23.16■■□□□ 1.3
CLIP1-211ENST00000539080 TEX11Q8IYF3 940 aa23.16■■□□□ 1.3
CLIP1-211ENST00000539080 OSBPL5Q9H0X9 879 aaPredicted RBP23.16■■□□□ 1.3
CLIP1-211ENST00000539080 AATFQ9NY61 560 aaKnown RBP eCLIP23.16■■□□□ 1.3
CLIP1-211ENST00000539080 FOCADQ5VW36 1801 aa23.15■■□□□ 1.3
CLIP1-211ENST00000539080 PHF20L1A8MW92 1017 aa23.15■■□□□ 1.3
CLIP1-211ENST00000539080 TBC1D12O60347 775 aa23.15■■□□□ 1.3
CLIP1-211ENST00000539080 FKTNO75072 461 aa23.15■■□□□ 1.3
CLIP1-211ENST00000539080 IDH1O75874 414 aaKnown RBP23.15■■□□□ 1.3
CLIP1-211ENST00000539080 RRP1P56182 461 aaKnown RBP23.15■■□□□ 1.3
CLIP1-211ENST00000539080 MAP3K12Q12852 859 aa23.15■■□□□ 1.3
CLIP1-211ENST00000539080 TTF1Q15361 905 aaPredicted RBP23.15■■□□□ 1.3
CLIP1-211ENST00000539080 BRI3BPQ8WY22 251 aa23.15■■□□□ 1.3
CLIP1-211ENST00000539080 ZCCHC17Q9NP64 241 aaKnown RBP23.15■■□□□ 1.3
CLIP1-211ENST00000539080 IRF6O14896 467 aa23.14■■□□□ 1.29
CLIP1-211ENST00000539080 ADGRA1Q86SQ6 560 aa23.14■■□□□ 1.29
CLIP1-211ENST00000539080 SH3RF3Q8TEJ3 882 aaPredicted RBP23.14■■□□□ 1.29
CLIP1-211ENST00000539080 R3HDMLQ9H3Y0 253 aa23.14■■□□□ 1.29
CLIP1-211ENST00000539080 CDK5RAP2Q96SN8 1893 aa23.13■■□□□ 1.29
CLIP1-211ENST00000539080 PKN2Q16513 984 aaKnown RBP23.13■■□□□ 1.29
CLIP1-211ENST00000539080 SCYL3Q8IZE3 742 aa23.13■■□□□ 1.29
CLIP1-211ENST00000539080 YTHDC1Q96MU7 727 aaKnown RBP23.13■■□□□ 1.29
CLIP1-211ENST00000539080 LRRCC1Q9C099 1032 aa23.13■■□□□ 1.29
CLIP1-211ENST00000539080 DHX36Q9H2U1 1008 aaKnown RBP23.13■■□□□ 1.29
CLIP1-211ENST00000539080 CTNND1O60716 968 aaKnown RBP23.12■■□□□ 1.29
CLIP1-211ENST00000539080 CYP7A1P22680 504 aa23.12■■□□□ 1.29
CLIP1-211ENST00000539080 CRHR2Q13324 411 aa23.12■■□□□ 1.29
CLIP1-211ENST00000539080 DOCK1Q14185 1865 aa23.12■■□□□ 1.29
CLIP1-211ENST00000539080 ANTXR1Q9H6X2 564 aa23.12■■□□□ 1.29
CLIP1-211ENST00000539080 KCNH4Q9UQ05 1017 aa23.12■■□□□ 1.29
CLIP1-211ENST00000539080 NDUFB9Q9Y6M9 179 aa23.12■■□□□ 1.29
CLIP1-211ENST00000539080 MAGEB6Q8N7X4 407 aa23.11■■□□□ 1.29
CLIP1-211ENST00000539080 PICK1Q9NRD5 415 aa23.11■■□□□ 1.29
CLIP1-211ENST00000539080 DCTPP1Q9H773 170 aa23.1■■□□□ 1.29
CLIP1-211ENST00000539080 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.1■■□□□ 1.293e-6■■■■■ 31.2
CLIP1-211ENST00000539080 ZFYVE28Q9HCC9 887 aa23.1■■□□□ 1.29
CLIP1-211ENST00000539080 HERC5Q9UII4 1024 aaKnown RBP23.1■■□□□ 1.29
CLIP1-211ENST00000539080 FLT1P17948 1338 aa23.09■■□□□ 1.29
CLIP1-211ENST00000539080 CXCL11O14625 94 aa23.09■■□□□ 1.29
CLIP1-211ENST00000539080 ATP5JP18859 108 aa23.09■■□□□ 1.29
CLIP1-211ENST00000539080 TAF1CQ15572 869 aaPredicted RBP23.09■■□□□ 1.29
CLIP1-211ENST00000539080 FAM43AQ8N2R8 423 aa23.09■■□□□ 1.29
CLIP1-211ENST00000539080 TGFBRAP1Q8WUH2 860 aa23.09■■□□□ 1.29
CLIP1-211ENST00000539080 PI4KBQ9UBF8 816 aa23.09■■□□□ 1.29
CLIP1-211ENST00000539080 PTPRAP18433 802 aa23.08■■□□□ 1.29
CLIP1-211ENST00000539080 BTBD19C9JJ37 291 aa23.07■■□□□ 1.28
CLIP1-211ENST00000539080 ANKRD23Q86SG2 305 aa23.07■■□□□ 1.28
CLIP1-211ENST00000539080 MAPKAPK5Q8IW41 473 aa23.07■■□□□ 1.28
CLIP1-211ENST00000539080 ERO1AQ96HE7 468 aa23.07■■□□□ 1.28
CLIP1-211ENST00000539080 DNAJC2Q99543 621 aaKnown RBP23.07■■□□□ 1.28
CLIP1-211ENST00000539080 SIPA1L1O43166 1804 aa23.06■■□□□ 1.28
CLIP1-211ENST00000539080 GOLIM4O00461 696 aa23.06■■□□□ 1.28
CLIP1-211ENST00000539080 DYNLL1P63167 89 aaKnown RBP23.06■■□□□ 1.28
CLIP1-211ENST00000539080 MIGA1Q8NAN2 632 aa23.06■■□□□ 1.28
CLIP1-211ENST00000539080 ZHX2Q9Y6X8 837 aa23.06■■□□□ 1.28
CLIP1-211ENST00000539080 PHIPQ8WWQ0 1821 aa23.05■■□□□ 1.28
CLIP1-211ENST00000539080 CCDC85CA6NKD9 419 aa23.05■■□□□ 1.28
CLIP1-211ENST00000539080 SLURP2P0DP57 97 aa23.05■■□□□ 1.28
CLIP1-211ENST00000539080 SP3Q02447 781 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms