RNA–Protein interactions for RNA: ENST00000538909.1

CBX3P4-201, Transcript of chromobox 3 pseudogene 4, humanhuman

BASIC

Gene CBX3P4, Length 354 nt, Biotype transcribed processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-201ENST00000538909 CSRNP1Q96S65 589 aa4.34□□□□□ -1.71
CBX3P4-201ENST00000538909 TNKS2Q9H2K2 1166 aa4.34□□□□□ -1.71
CBX3P4-201ENST00000538909 ATXN3LQ9H3M9 355 aa4.34□□□□□ -1.71
CBX3P4-201ENST00000538909 LIN7BQ9HAP6 207 aa4.34□□□□□ -1.71
CBX3P4-201ENST00000538909 PITPNM2Q9BZ72 1349 aa4.33□□□□□ -1.72
CBX3P4-201ENST00000538909 B3GALT4O96024 378 aa4.33□□□□□ -1.72
CBX3P4-201ENST00000538909 MPSTP25325 297 aa4.33□□□□□ -1.72
CBX3P4-201ENST00000538909 ID3Q02535 119 aa4.33□□□□□ -1.72
CBX3P4-201ENST00000538909 AAMPQ13685 434 aa4.33□□□□□ -1.72
CBX3P4-201ENST00000538909 TMEM164Q5U3C3 297 aa4.33□□□□□ -1.72
CBX3P4-201ENST00000538909 CCNJLQ8IV13 435 aa4.33□□□□□ -1.72
CBX3P4-201ENST00000538909 CCDC86Q9H6F5 360 aaKnown RBP4.33□□□□□ -1.72
CBX3P4-201ENST00000538909 SSU72Q9NP77 194 aaKnown RBP4.33□□□□□ -1.72
CBX3P4-201ENST00000538909 CD320Q9NPF0 282 aa4.33□□□□□ -1.72
CBX3P4-201ENST00000538909 SNX11Q9Y5W9 270 aa4.33□□□□□ -1.72
CBX3P4-201ENST00000538909 A0A1W2PP55 124 aa4.32□□□□□ -1.72
CBX3P4-201ENST00000538909 ELOAQ14241 798 aaKnown RBP4.32□□□□□ -1.72
CBX3P4-201ENST00000538909 HELQQ8TDG4 1101 aa4.32□□□□□ -1.72
CBX3P4-201ENST00000538909 HEXIM2Q96MH2 286 aaKnown RBP4.32□□□□□ -1.72
CBX3P4-201ENST00000538909 TCF12Q99081 682 aa4.32□□□□□ -1.72
CBX3P4-201ENST00000538909 IRF2BPLQ9H1B7 796 aa4.32□□□□□ -1.72
CBX3P4-201ENST00000538909 DCP1AQ9NPI6 582 aaPredicted RBP4.32□□□□□ -1.72
CBX3P4-201ENST00000538909 DISC1Q9NRI5 854 aa4.32□□□□□ -1.72
CBX3P4-201ENST00000538909 SMG5Q9UPR3 1016 aaKnown RBP4.32□□□□□ -1.72
CBX3P4-201ENST00000538909 ETV2O00321 342 aaPredicted RBP4.31□□□□□ -1.72
CBX3P4-201ENST00000538909 ATP2B4P23634 1241 aa4.31□□□□□ -1.72
CBX3P4-201ENST00000538909 SPACA3Q8IXA5 215 aa4.31□□□□□ -1.72
CBX3P4-201ENST00000538909 EPB41L4BQ9H329 900 aa4.31□□□□□ -1.72
CBX3P4-201ENST00000538909 ZCCHC4Q9H5U6 513 aa4.31□□□□□ -1.72
CBX3P4-201ENST00000538909 CARS2Q9HA77 564 aaKnown RBP4.31□□□□□ -1.72
CBX3P4-201ENST00000538909 ZFYVE28Q9HCC9 887 aa4.31□□□□□ -1.72
CBX3P4-201ENST00000538909 PCOLCE2Q9UKZ9 415 aa4.31□□□□□ -1.72
CBX3P4-201ENST00000538909 ZNF862O60290 1169 aa4.3□□□□□ -1.72
CBX3P4-201ENST00000538909 FOXD2O60548 495 aaPredicted RBP4.3□□□□□ -1.72
CBX3P4-201ENST00000538909 NEFMP07197 916 aa4.3□□□□□ -1.72
CBX3P4-201ENST00000538909 SLFN14P0C7P3 912 aa4.3□□□□□ -1.72
CBX3P4-201ENST00000538909 BMP7P18075 431 aa4.3□□□□□ -1.72
CBX3P4-201ENST00000538909 ZNF157P51786 506 aaPredicted RBP4.3□□□□□ -1.72
CBX3P4-201ENST00000538909 LINC00310P59036 64 aa4.3□□□□□ -1.72
CBX3P4-201ENST00000538909 AP3B2Q13367 1082 aa4.3□□□□□ -1.72
CBX3P4-201ENST00000538909 DBX2Q6ZNG2 339 aa4.3□□□□□ -1.72
CBX3P4-201ENST00000538909 CLP1Q92989 425 aaKnown RBP4.3□□□□□ -1.72
CBX3P4-201ENST00000538909 ZNF576Q9H609 170 aa4.3□□□□□ -1.72
CBX3P4-201ENST00000538909 PARD6AQ9NPB6 346 aa4.3□□□□□ -1.72
CBX3P4-201ENST00000538909 SLAIN2Q9P270 581 aa4.3□□□□□ -1.72
CBX3P4-201ENST00000538909 SYNGAP1Q96PV0 1343 aa4.29□□□□□ -1.72
CBX3P4-201ENST00000538909 A0A0G2JLL6 359 aaPredicted RBP4.29□□□□□ -1.72
CBX3P4-201ENST00000538909 MTMR3Q13615 1198 aa4.29□□□□□ -1.72
CBX3P4-201ENST00000538909 NKPD1Q17RQ9 610 aa4.29□□□□□ -1.72
CBX3P4-201ENST00000538909 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.29□□□□□ -1.72
CBX3P4-201ENST00000538909 ISL2Q96A47 359 aa4.29□□□□□ -1.72
CBX3P4-201ENST00000538909 C19orf73Q9NVV2 129 aa4.29□□□□□ -1.72
CBX3P4-201ENST00000538909 GTF2IRD1Q9UHL9 959 aa4.29□□□□□ -1.72
CBX3P4-201ENST00000538909 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP4.28□□□□□ -1.72
CBX3P4-201ENST00000538909 MED14OSP0DP75 135 aa4.28□□□□□ -1.72
CBX3P4-201ENST00000538909 EHHADHQ08426 723 aa4.28□□□□□ -1.72
CBX3P4-201ENST00000538909 FAM214BQ7L5A3 538 aa4.28□□□□□ -1.72
CBX3P4-201ENST00000538909 KCNN1Q92952 543 aa4.28□□□□□ -1.72
CBX3P4-201ENST00000538909 GNAT3A8MTJ3 354 aa4.27□□□□□ -1.73
CBX3P4-201ENST00000538909 SYN1P17600 705 aa4.27□□□□□ -1.73
CBX3P4-201ENST00000538909 GLDCP23378 1020 aa4.27□□□□□ -1.73
CBX3P4-201ENST00000538909 GDNFP39905 211 aa4.27□□□□□ -1.73
CBX3P4-201ENST00000538909 KIF4BQ2VIQ3 1234 aa4.27□□□□□ -1.73
CBX3P4-201ENST00000538909 ALKBH2Q6NS38 261 aa4.27□□□□□ -1.73
CBX3P4-201ENST00000538909 GTF3C2Q8WUA4 911 aaPredicted RBP4.27□□□□□ -1.73
CBX3P4-201ENST00000538909 ATP13A1Q9HD20 1204 aa4.27□□□□□ -1.73
CBX3P4-201ENST00000538909 ZNF777Q9ULD5 760 aaPredicted RBP4.27□□□□□ -1.73
CBX3P4-201ENST00000538909 PCDHGC5Q9Y5F6 944 aa4.27□□□□□ -1.73
CBX3P4-201ENST00000538909 CLCN7P51798 805 aa4.26□□□□□ -1.73
CBX3P4-201ENST00000538909 KRTAP10-2P60368 255 aa4.26□□□□□ -1.73
CBX3P4-201ENST00000538909 GGNQ86UU5 652 aa4.26□□□□□ -1.73
CBX3P4-201ENST00000538909 GALNT12Q8IXK2 581 aa4.26□□□□□ -1.73
CBX3P4-201ENST00000538909 EHD4Q9H223 541 aa4.26□□□□□ -1.73
CBX3P4-201ENST00000538909 IGF2BP3O00425 579 aaKnown RBP eCLIP4.25□□□□□ -1.73
CBX3P4-201ENST00000538909 GSTP1P09211 210 aaKnown RBP4.25□□□□□ -1.73
CBX3P4-201ENST00000538909 ITPKAP23677 461 aa4.25□□□□□ -1.73
CBX3P4-201ENST00000538909 USP5P45974 858 aa4.25□□□□□ -1.73
CBX3P4-201ENST00000538909 NFIXQ14938 502 aa4.25□□□□□ -1.73
CBX3P4-201ENST00000538909 CDKAL1Q5VV42 579 aa4.25□□□□□ -1.73
CBX3P4-201ENST00000538909 USPL1Q5W0Q7 1092 aa4.25□□□□□ -1.73
CBX3P4-201ENST00000538909 PRRT2Q7Z6L0 340 aaPredicted RBP4.25□□□□□ -1.73
CBX3P4-201ENST00000538909 ABHD4Q8TB40 342 aa4.25□□□□□ -1.73
CBX3P4-201ENST00000538909 KCNB2Q92953 911 aa4.25□□□□□ -1.73
CBX3P4-201ENST00000538909 HSPA12BQ96MM6 686 aa4.25□□□□□ -1.73
CBX3P4-201ENST00000538909 PRDM10Q9NQV6 1147 aa4.25□□□□□ -1.73
CBX3P4-201ENST00000538909 ATG7O95352 703 aa4.24□□□□□ -1.73
CBX3P4-201ENST00000538909 SLC26A8Q96RN1 970 aa4.24□□□□□ -1.73
CBX3P4-201ENST00000538909 CCDC87Q9NVE4 849 aa4.24□□□□□ -1.73
CBX3P4-201ENST00000538909 SLAMF8Q9P0V8 285 aa4.24□□□□□ -1.73
CBX3P4-201ENST00000538909 CNTNAP4Q9C0A0 1308 aa4.23□□□□□ -1.73
CBX3P4-201ENST00000538909 FAM155AB1AL88 458 aaPredicted RBP4.23□□□□□ -1.73
CBX3P4-201ENST00000538909 H3BS24 57 aa4.23□□□□□ -1.73
CBX3P4-201ENST00000538909 FZD6O60353 706 aa4.23□□□□□ -1.73
CBX3P4-201ENST00000538909 RAC2P15153 192 aa4.23□□□□□ -1.73
CBX3P4-201ENST00000538909 HNRNPUQ00839 825 aaKnown RBP eCLIP4.23□□□□□ -1.73
CBX3P4-201ENST00000538909 FAAP100Q0VG06 881 aa4.23□□□□□ -1.73
CBX3P4-201ENST00000538909 KIAA0319Q5VV43 1072 aa4.23□□□□□ -1.73
CBX3P4-201ENST00000538909 UBE3DQ7Z6J8 389 aa4.23□□□□□ -1.73
CBX3P4-201ENST00000538909 TTC6Q86TZ1 520 aa4.23□□□□□ -1.73
CBX3P4-201ENST00000538909 NPAS4Q8IUM7 802 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms