RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 PTMAP06454 111 aaKnown RBP12.6□□□□□ -0.39
CLIP1-210ENST00000538120 CYB5R4Q7L1T6 521 aa12.6□□□□□ -0.39
CLIP1-210ENST00000538120 METRNQ9UJH8 293 aa12.6□□□□□ -0.39
CLIP1-210ENST00000538120 HPS5Q9UPZ3 1129 aa12.6□□□□□ -0.39
CLIP1-210ENST00000538120 TCHHQ07283 1943 aa12.59□□□□□ -0.39
CLIP1-210ENST00000538120 TNRC6CQ9HCJ0 1690 aaKnown RBP12.59□□□□□ -0.39
CLIP1-210ENST00000538120 PPP1R37O75864 691 aa12.59□□□□□ -0.39
CLIP1-210ENST00000538120 RESTQ13127 1097 aa12.59□□□□□ -0.39
CLIP1-210ENST00000538120 SLC51AQ86UW1 340 aa12.59□□□□□ -0.39
CLIP1-210ENST00000538120 SLC39A7Q92504 469 aa12.59□□□□□ -0.39
CLIP1-210ENST00000538120 INCENPQ9NQS7 918 aa12.59□□□□□ -0.39
CLIP1-210ENST00000538120 GNL3LQ9NVN8 582 aaKnown RBP12.59□□□□□ -0.39
CLIP1-210ENST00000538120 LRP2BPQ9P2M1 347 aa12.59□□□□□ -0.39
CLIP1-210ENST00000538120 IRS2Q9Y4H2 1338 aa12.59□□□□□ -0.39
CLIP1-210ENST00000538120 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.59□□□□□ -0.39
CLIP1-210ENST00000538120 UBE2HP62256 183 aa12.59□□□□□ -0.39
CLIP1-210ENST00000538120 RALYLQ86SE5 291 aaKnown RBP12.59□□□□□ -0.39
CLIP1-210ENST00000538120 ZNF384Q8TF68 577 aa12.59□□□□□ -0.39
CLIP1-210ENST00000538120 CARMIL3Q8ND23 1372 aa12.58□□□□□ -0.4
CLIP1-210ENST00000538120 NEDD4P46934 1319 aa12.58□□□□□ -0.4
CLIP1-210ENST00000538120 FDPSP14324 419 aaKnown RBP12.58□□□□□ -0.4
CLIP1-210ENST00000538120 CAVIN4Q5BKX8 364 aa12.58□□□□□ -0.4
CLIP1-210ENST00000538120 MIGA1Q8NAN2 632 aa12.58□□□□□ -0.4
CLIP1-210ENST00000538120 KLF18A0A0U1RQI7 1052 aa12.57□□□□□ -0.4
CLIP1-210ENST00000538120 CYP7A1P22680 504 aa12.57□□□□□ -0.4
CLIP1-210ENST00000538120 CSPP1Q1MSJ5 1256 aa12.57□□□□□ -0.4
CLIP1-210ENST00000538120 KRT27Q7Z3Y8 459 aa12.57□□□□□ -0.4
CLIP1-210ENST00000538120 TTC6Q86TZ1 520 aa12.57□□□□□ -0.4
CLIP1-210ENST00000538120 ANKRD2Q9GZV1 360 aa12.57□□□□□ -0.4
CLIP1-210ENST00000538120 RYDENQ9NUL5 291 aaKnown RBP12.57□□□□□ -0.4
CLIP1-210ENST00000538120 ABCF2Q9UG63 623 aa12.57□□□□□ -0.4
CLIP1-210ENST00000538120 USP25Q9UHP3 1055 aa12.57□□□□□ -0.4
CLIP1-210ENST00000538120 NAP1L2Q9ULW6 460 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-210ENST00000538120 SLC4A4Q9Y6R1 1079 aa12.57□□□□□ -0.4
CLIP1-210ENST00000538120 SH2B2O14492 632 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-210ENST00000538120 PPFIA3O75145 1194 aa12.57□□□□□ -0.4
CLIP1-210ENST00000538120 GYS1P13807 737 aa12.57□□□□□ -0.4
CLIP1-210ENST00000538120 HMGN5P82970 282 aaKnown RBP12.57□□□□□ -0.4
CLIP1-210ENST00000538120 CTDSPL2Q05D32 466 aa12.57□□□□□ -0.4
CLIP1-210ENST00000538120 DPY19L2Q6NUT2 758 aa12.57□□□□□ -0.4
CLIP1-210ENST00000538120 C17orf53Q8N3J3 647 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-210ENST00000538120 FAM184AQ8NB25 1140 aa12.57□□□□□ -0.4
CLIP1-210ENST00000538120 NAPBQ9H115 298 aa12.57□□□□□ -0.4
CLIP1-210ENST00000538120 TFCP2L1Q9NZI6 479 aa12.57□□□□□ -0.4
CLIP1-210ENST00000538120 B4E1Z4 1266 aa12.56□□□□□ -0.4
CLIP1-210ENST00000538120 C7P10643 843 aa12.56□□□□□ -0.4
CLIP1-210ENST00000538120 GNAT2P19087 354 aa12.56□□□□□ -0.4
CLIP1-210ENST00000538120 TRDNQ13061 729 aa12.56□□□□□ -0.4
CLIP1-210ENST00000538120 SLC27A3Q5K4L6 730 aa12.56□□□□□ -0.4
CLIP1-210ENST00000538120 PRR5LQ6MZQ0 368 aa12.56□□□□□ -0.4
CLIP1-210ENST00000538120 TXNRD3Q86VQ6 643 aa12.56□□□□□ -0.4
CLIP1-210ENST00000538120 CERS3Q8IU89 383 aa12.56□□□□□ -0.4
CLIP1-210ENST00000538120 TSC1Q92574 1164 aa12.56□□□□□ -0.4
CLIP1-210ENST00000538120 SENP2Q9HC62 589 aa12.56□□□□□ -0.4
CLIP1-210ENST00000538120 RAI14Q9P0K7 980 aa12.56□□□□□ -0.4
CLIP1-210ENST00000538120 TRIM37O94972 964 aa12.56□□□□□ -0.4
CLIP1-210ENST00000538120 KRT85P78386 507 aa12.56□□□□□ -0.4
CLIP1-210ENST00000538120 NAA16Q6N069 864 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-210ENST00000538120 SASS6Q6UVJ0 657 aa12.56□□□□□ -0.4
CLIP1-210ENST00000538120 RAB11FIP4Q86YS3 637 aa12.56□□□□□ -0.4
CLIP1-210ENST00000538120 FAM177A1Q8N128 213 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-210ENST00000538120 IGDCC4Q8TDY8 1250 aa12.56□□□□□ -0.4
CLIP1-210ENST00000538120 RIOK1Q9BRS2 568 aaKnown RBP12.56□□□□□ -0.4
CLIP1-210ENST00000538120 OCEL1Q9H607 264 aa12.56□□□□□ -0.4
CLIP1-210ENST00000538120 CACNA1SQ13698 1873 aa12.55□□□□□ -0.4
CLIP1-210ENST00000538120 GOLGA8BA8MQT2 603 aa12.55□□□□□ -0.4
CLIP1-210ENST00000538120 H3BQV1 296 aa12.55□□□□□ -0.4
CLIP1-210ENST00000538120 SEMA3EO15041 775 aa12.55□□□□□ -0.4
CLIP1-210ENST00000538120 IFFO2Q5TF58 517 aa12.55□□□□□ -0.4
CLIP1-210ENST00000538120 VPS37DQ86XT2 251 aa12.55□□□□□ -0.4
CLIP1-210ENST00000538120 CNBD1Q8NA66 436 aa12.55□□□□□ -0.4
CLIP1-210ENST00000538120 SYAP1Q96A49 352 aaPredicted RBP12.55□□□□□ -0.4
CLIP1-210ENST00000538120 TTC12Q9H892 705 aaPredicted RBP12.55□□□□□ -0.4
CLIP1-210ENST00000538120 TFIP11Q9UBB9 837 aaKnown RBP12.55□□□□□ -0.4
CLIP1-210ENST00000538120 ANGEL1Q9UNK9 670 aaKnown RBP12.55□□□□□ -0.4
CLIP1-210ENST00000538120 ELP1O95163 1332 aa12.55□□□□□ -0.4
CLIP1-210ENST00000538120 UBR3Q6ZT12 1888 aa12.55□□□□□ -0.4
CLIP1-210ENST00000538120 HIBADHP31937 336 aaKnown RBP12.55□□□□□ -0.4
CLIP1-210ENST00000538120 ADD1P35611 737 aaKnown RBP12.55□□□□□ -0.4
CLIP1-210ENST00000538120 KIAA2012Q0VF49 1180 aa12.55□□□□□ -0.4
CLIP1-210ENST00000538120 GRAPQ13588 217 aa12.55□□□□□ -0.4
CLIP1-210ENST00000538120 GRAPLQ8TC17 118 aaPredicted RBP12.55□□□□□ -0.4
CLIP1-210ENST00000538120 PDS5AQ29RF7 1337 aaKnown RBP12.55□□□□□ -0.4
CLIP1-210ENST00000538120 TIAM2Q8IVF5 1701 aa12.55□□□□□ -0.4
CLIP1-210ENST00000538120 BRWD3Q6RI45 1802 aa12.55□□□□□ -0.4
CLIP1-210ENST00000538120 MAGEB6P1A0A0J9YX57 407 aa12.54□□□□□ -0.4
CLIP1-210ENST00000538120 DYNC1I1O14576 645 aa12.54□□□□□ -0.4
CLIP1-210ENST00000538120 FOSBP53539 338 aa12.54□□□□□ -0.4
CLIP1-210ENST00000538120 AKNAD1Q5T1N1 836 aa12.54□□□□□ -0.4
CLIP1-210ENST00000538120 CHMP4CQ96CF2 233 aa12.54□□□□□ -0.4
CLIP1-210ENST00000538120 ZSCAN16Q9H4T2 348 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-210ENST00000538120 ZSWIM5Q9P217 1185 aa12.54□□□□□ -0.4
CLIP1-210ENST00000538120 DYNLL1P63167 89 aaKnown RBP12.54□□□□□ -0.4
CLIP1-210ENST00000538120 CCDC183Q5T5S1 534 aa12.54□□□□□ -0.4
CLIP1-210ENST00000538120 SDR42E1Q8WUS8 393 aa12.54□□□□□ -0.4
CLIP1-210ENST00000538120 LEO1Q8WVC0 666 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-210ENST00000538120 STAG1Q8WVM7 1258 aa12.54□□□□□ -0.4
CLIP1-210ENST00000538120 TMEM87BQ96K49 555 aa12.54□□□□□ -0.4
CLIP1-210ENST00000538120 NACAP1Q9BZK3 213 aa12.54□□□□□ -0.4
CLIP1-210ENST00000538120 LY9Q9HBG7 655 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms