RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ZNF112Q9UJU3 913 aa18.09■□□□□ 0.49
USP28-204ENST00000537642 NDUFB9Q9Y6M9 179 aa18.09■□□□□ 0.49
USP28-204ENST00000537642 DDTLA6NHG4 134 aaPredicted RBP18.08■□□□□ 0.48
USP28-204ENST00000537642 IGF2BP3O00425 579 aaKnown RBP eCLIP18.08■□□□□ 0.48
USP28-204ENST00000537642 INPP5BP32019 993 aa18.08■□□□□ 0.48
USP28-204ENST00000537642 IFNL1Q8IU54 200 aa18.08■□□□□ 0.48
USP28-204ENST00000537642 TESPA1A2RU30 521 aaPredicted RBP18.07■□□□□ 0.48
USP28-204ENST00000537642 SPDYE5A6NIY4 337 aa18.07■□□□□ 0.48
USP28-204ENST00000537642 NPM3O75607 178 aaKnown RBP18.07■□□□□ 0.48
USP28-204ENST00000537642 MAP4K4O95819 1239 aaPredicted RBP18.07■□□□□ 0.48
USP28-204ENST00000537642 ADGRA1Q86SQ6 560 aa18.07■□□□□ 0.48
USP28-204ENST00000537642 OTUD5Q96G74 571 aa18.07■□□□□ 0.48
USP28-204ENST00000537642 MS4A4AQ96JQ5 239 aa18.07■□□□□ 0.48
USP28-204ENST00000537642 CFHR5Q9BXR6 569 aa18.07■□□□□ 0.48
USP28-204ENST00000537642 R3HDMLQ9H3Y0 253 aa18.07■□□□□ 0.48
USP28-204ENST00000537642 ANTXR1Q9H6X2 564 aa18.07■□□□□ 0.48
USP28-204ENST00000537642 CDK5RAP2Q96SN8 1893 aa18.07■□□□□ 0.48
USP28-204ENST00000537642 IGSF3O75054 1194 aa18.06■□□□□ 0.48
USP28-204ENST00000537642 CAPN15O75808 1086 aa18.06■□□□□ 0.48
USP28-204ENST00000537642 IFIT2P09913 472 aaKnown RBP18.06■□□□□ 0.48
USP28-204ENST00000537642 ERO1BQ86YB8 467 aa18.06■□□□□ 0.48
USP28-204ENST00000537642 ZSCAN29Q8IWY8 852 aaPredicted RBP18.06■□□□□ 0.48
USP28-204ENST00000537642 TEX11Q8IYF3 940 aa18.06■□□□□ 0.48
USP28-204ENST00000537642 SH3RF3Q8TEJ3 882 aaPredicted RBP18.06■□□□□ 0.48
USP28-204ENST00000537642 PTPN18Q99952 460 aa18.06■□□□□ 0.48
USP28-204ENST00000537642 AATFQ9NY61 560 aaKnown RBP eCLIP18.06■□□□□ 0.48
USP28-204ENST00000537642 IDH1O75874 414 aaKnown RBP18.05■□□□□ 0.48
USP28-204ENST00000537642 ALDH1A1P00352 501 aa18.05■□□□□ 0.48
USP28-204ENST00000537642 SLURP2P0DP57 97 aa18.05■□□□□ 0.48
USP28-204ENST00000537642 PPP4CP60510 307 aa18.05■□□□□ 0.48
USP28-204ENST00000537642 MAP3K10Q02779 954 aa18.05■□□□□ 0.48
USP28-204ENST00000537642 NOL10Q9BSC4 688 aaKnown RBP18.05■□□□□ 0.48
USP28-204ENST00000537642 BCL11AQ9H165 835 aa18.05■□□□□ 0.48
USP28-204ENST00000537642 PHF20L1A8MW92 1017 aa18.04■□□□□ 0.48
USP28-204ENST00000537642 GPR25O00155 361 aa18.04■□□□□ 0.48
USP28-204ENST00000537642 BAG3O95817 575 aa18.04■□□□□ 0.48
USP28-204ENST00000537642 GTF2A2P52657 109 aa18.04■□□□□ 0.48
USP28-204ENST00000537642 NOM1Q5C9Z4 860 aaKnown RBP18.04■□□□□ 0.48
USP28-204ENST00000537642 NOL9Q5SY16 702 aaKnown RBP18.04■□□□□ 0.48
USP28-204ENST00000537642 ZNF296Q8WUU4 475 aaPredicted RBP18.04■□□□□ 0.48
USP28-204ENST00000537642 BRI3BPQ8WY22 251 aa18.04■□□□□ 0.48
USP28-204ENST00000537642 MCOLN1Q9GZU1 580 aa18.04■□□□□ 0.48
USP28-204ENST00000537642 OSBPL5Q9H0X9 879 aaPredicted RBP18.04■□□□□ 0.48
USP28-204ENST00000537642 FOCADQ5VW36 1801 aa18.04■□□□□ 0.48
USP28-204ENST00000537642 COL2A1P02458 1487 aaPredicted RBP18.03■□□□□ 0.48
USP28-204ENST00000537642 CCL15-CCL14A0A0B4J2E2 113 aa18.03■□□□□ 0.48
USP28-204ENST00000537642 IRF6O14896 467 aa18.03■□□□□ 0.48
USP28-204ENST00000537642 CYP7A1P22680 504 aa18.03■□□□□ 0.48
USP28-204ENST00000537642 PPIL2Q13356 520 aa18.03■□□□□ 0.48
USP28-204ENST00000537642 DGKZQ13574 1117 aa18.03■□□□□ 0.48
USP28-204ENST00000537642 CCL15Q16663 113 aa18.03■□□□□ 0.48
USP28-204ENST00000537642 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.03■□□□□ 0.48
USP28-204ENST00000537642 ABHD8Q96I13 439 aa18.03■□□□□ 0.48
USP28-204ENST00000537642 LRRCC1Q9C099 1032 aa18.03■□□□□ 0.48
USP28-204ENST00000537642 SMARCA5O60264 1052 aaPredicted RBP18.02■□□□□ 0.48
USP28-204ENST00000537642 PLCG2P16885 1265 aa18.02■□□□□ 0.48
USP28-204ENST00000537642 DYNLL1P63167 89 aaKnown RBP18.02■□□□□ 0.48
USP28-204ENST00000537642 PPATQ06203 517 aa18.02■□□□□ 0.48
USP28-204ENST00000537642 OTUD7BQ6GQQ9 843 aa18.02■□□□□ 0.48
USP28-204ENST00000537642 MAGEB6Q8N7X4 407 aa18.02■□□□□ 0.48
USP28-204ENST00000537642 PCDHB15Q9Y5E8 787 aa18.02■□□□□ 0.48
USP28-204ENST00000537642 SIPA1L1O43166 1804 aa18.01■□□□□ 0.47
USP28-204ENST00000537642 MAP3K12Q12852 859 aa18.01■□□□□ 0.47
USP28-204ENST00000537642 TGFBRAP1Q8WUH2 860 aa18.01■□□□□ 0.47
USP28-204ENST00000537642 DCTPP1Q9H773 170 aa18.01■□□□□ 0.47
USP28-204ENST00000537642 DOCK1Q14185 1865 aa18.01■□□□□ 0.47
USP28-204ENST00000537642 TBC1D12O60347 775 aa18■□□□□ 0.47
USP28-204ENST00000537642 CETPP11597 493 aa18■□□□□ 0.47
USP28-204ENST00000537642 CRHR2Q13324 411 aa18■□□□□ 0.47
USP28-204ENST00000537642 SNAPC2Q13487 334 aa18■□□□□ 0.47
USP28-204ENST00000537642 TTF1Q15361 905 aaPredicted RBP18■□□□□ 0.47
USP28-204ENST00000537642 MAPKAPK5Q8IW41 473 aa18■□□□□ 0.47
USP28-204ENST00000537642 SCYL3Q8IZE3 742 aa18■□□□□ 0.47
USP28-204ENST00000537642 FAM43AQ8N2R8 423 aa18■□□□□ 0.47
USP28-204ENST00000537642 MIGA1Q8NAN2 632 aa18■□□□□ 0.47
USP28-204ENST00000537642 EDC3Q96F86 508 aaKnown RBP18■□□□□ 0.47
USP28-204ENST00000537642 CRBNQ96SW2 442 aa18■□□□□ 0.47
USP28-204ENST00000537642 DNAJC2Q99543 621 aaKnown RBP18■□□□□ 0.47
USP28-204ENST00000537642 FLT1P17948 1338 aa17.99■□□□□ 0.47
USP28-204ENST00000537642 FAM196BA6NMK8 535 aa17.99■□□□□ 0.47
USP28-204ENST00000537642 GOLIM4O00461 696 aa17.99■□□□□ 0.47
USP28-204ENST00000537642 FKTNO75072 461 aa17.99■□□□□ 0.47
USP28-204ENST00000537642 ATP5JP18859 108 aa17.99■□□□□ 0.47
USP28-204ENST00000537642 CTU1Q7Z7A3 348 aaKnown RBP17.99■□□□□ 0.47
USP28-204ENST00000537642 BOLA2Q9H3K6 86 aa17.99■□□□□ 0.47
USP28-204ENST00000537642 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.99■□□□□ 0.47
USP28-204ENST00000537642 KCNH4Q9UQ05 1017 aa17.99■□□□□ 0.47
USP28-204ENST00000537642 PHIPQ8WWQ0 1821 aa17.98■□□□□ 0.47
USP28-204ENST00000537642 BTBD19C9JJ37 291 aa17.98■□□□□ 0.47
USP28-204ENST00000537642 CTNND1O60716 968 aaKnown RBP17.98■□□□□ 0.47
USP28-204ENST00000537642 PTPRAP18433 802 aa17.98■□□□□ 0.47
USP28-204ENST00000537642 TMED8Q6PL24 325 aaPredicted RBP17.98■□□□□ 0.47
USP28-204ENST00000537642 PICK1Q9NRD5 415 aa17.98■□□□□ 0.47
USP28-204ENST00000537642 MYH1P12882 1939 aa17.98■□□□□ 0.47
USP28-204ENST00000537642 PDE6AP16499 860 aa17.97■□□□□ 0.47
USP28-204ENST00000537642 HAUS7Q99871 368 aa17.97■□□□□ 0.47
USP28-204ENST00000537642 DHX36Q9H2U1 1008 aaKnown RBP17.97■□□□□ 0.47
USP28-204ENST00000537642 PAG1Q9NWQ8 432 aa17.97■□□□□ 0.47
USP28-204ENST00000537642 PI4KBQ9UBF8 816 aa17.97■□□□□ 0.47
USP28-204ENST00000537642 ATAD5Q96QE3 1844 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms