RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 ARID4AP29374 1257 aaPredicted RBP13.3□□□□□ -0.28
SYNE1-234ENST00000536990 CDC27P30260 824 aa13.3□□□□□ -0.28
SYNE1-234ENST00000536990 METAP2P50579 478 aaKnown RBP eCLIP13.3□□□□□ -0.28
SYNE1-234ENST00000536990 UBASH3AP57075 661 aa13.3□□□□□ -0.28
SYNE1-234ENST00000536990 DZIP3Q86Y13 1208 aaKnown RBP13.3□□□□□ -0.28
SYNE1-234ENST00000536990 VSTM4Q8IW00 320 aa13.3□□□□□ -0.28
SYNE1-234ENST00000536990 SENP2Q9HC62 589 aa13.3□□□□□ -0.28
SYNE1-234ENST00000536990 BCL9O00512 1426 aa13.3□□□□□ -0.28
SYNE1-234ENST00000536990 ERVV-1B6SEH8 477 aa13.3□□□□□ -0.28
SYNE1-234ENST00000536990 FANCGO15287 622 aa13.3□□□□□ -0.28
SYNE1-234ENST00000536990 PDE6AP16499 860 aa13.3□□□□□ -0.28
SYNE1-234ENST00000536990 APOA5Q6Q788 366 aa13.3□□□□□ -0.28
SYNE1-234ENST00000536990 METTL16Q86W50 562 aaKnown RBP13.3□□□□□ -0.28
SYNE1-234ENST00000536990 JMYQ8N9B5 988 aa13.3□□□□□ -0.28
SYNE1-234ENST00000536990 LRP6O75581 1613 aa13.29□□□□□ -0.28
SYNE1-234ENST00000536990 CCP110O43303 1012 aa13.29□□□□□ -0.28
SYNE1-234ENST00000536990 CBFA2T2O43439 604 aa13.29□□□□□ -0.28
SYNE1-234ENST00000536990 CDKL5O76039 1030 aa13.29□□□□□ -0.28
SYNE1-234ENST00000536990 RXRAP19793 462 aa13.29□□□□□ -0.28
SYNE1-234ENST00000536990 PUM3Q15397 648 aaKnown RBP13.29□□□□□ -0.28
SYNE1-234ENST00000536990 NTRK3Q16288 839 aa13.29□□□□□ -0.28
SYNE1-234ENST00000536990 CPLX2Q6PUV4 134 aaKnown RBP13.29□□□□□ -0.28
SYNE1-234ENST00000536990 FOXP4Q8IVH2 680 aaPredicted RBP13.29□□□□□ -0.28
SYNE1-234ENST00000536990 REXO1L1PQ8IX06 675 aa13.29□□□□□ -0.28
SYNE1-234ENST00000536990 HELBQ8NG08 1087 aaPredicted RBP13.29□□□□□ -0.28
SYNE1-234ENST00000536990 LPIN2Q92539 896 aa13.29□□□□□ -0.28
SYNE1-234ENST00000536990 AIDAQ96BJ3 306 aa13.29□□□□□ -0.28
SYNE1-234ENST00000536990 CLIC6Q96NY7 704 aa13.29□□□□□ -0.28
SYNE1-234ENST00000536990 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.29□□□□□ -0.28
SYNE1-234ENST00000536990 WWC3Q9ULE0 1092 aa13.29□□□□□ -0.28
SYNE1-234ENST00000536990 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.29□□□□□ -0.28
SYNE1-234ENST00000536990 B4E1Z4 1266 aa13.29□□□□□ -0.28
SYNE1-234ENST00000536990 IL6STP40189 918 aaPredicted RBP13.29□□□□□ -0.28
SYNE1-234ENST00000536990 PHKBQ93100 1093 aa13.29□□□□□ -0.28
SYNE1-234ENST00000536990 CLCN6P51797 869 aa13.29□□□□□ -0.28
SYNE1-234ENST00000536990 LONRF3Q496Y0 759 aa13.29□□□□□ -0.28
SYNE1-234ENST00000536990 HOMER1Q86YM7 354 aa13.29□□□□□ -0.28
SYNE1-234ENST00000536990 TMEM87BQ96K49 555 aa13.29□□□□□ -0.28
SYNE1-234ENST00000536990 FAM217BQ9NTX9 383 aaPredicted RBP13.29□□□□□ -0.28
SYNE1-234ENST00000536990 INTS13Q9NVM9 706 aa13.29□□□□□ -0.28
SYNE1-234ENST00000536990 DNAI1Q9UI46 699 aa13.29□□□□□ -0.28
SYNE1-234ENST00000536990 UBN2Q6ZU65 1347 aa13.28□□□□□ -0.28
SYNE1-234ENST00000536990 MROH5Q6ZUA9 1318 aa13.28□□□□□ -0.28
SYNE1-234ENST00000536990 TMEM232C9JQI7 657 aa13.28□□□□□ -0.28
SYNE1-234ENST00000536990 EXOC5O00471 708 aa13.28□□□□□ -0.28
SYNE1-234ENST00000536990 MYO1BO43795 1136 aa13.28□□□□□ -0.28
SYNE1-234ENST00000536990 RANBP6O60518 1105 aaKnown RBP13.28□□□□□ -0.28
SYNE1-234ENST00000536990 SERPINC1P01008 464 aa13.28□□□□□ -0.28
SYNE1-234ENST00000536990 TMEM139Q8IV31 216 aa13.28□□□□□ -0.28
SYNE1-234ENST00000536990 IGDCC4Q8TDY8 1250 aa13.28□□□□□ -0.28
SYNE1-234ENST00000536990 STRBPQ96SI9 672 aaKnown RBP13.28□□□□□ -0.28
SYNE1-234ENST00000536990 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.28□□□□□ -0.28
SYNE1-234ENST00000536990 FHOD1Q9Y613 1164 aa13.28□□□□□ -0.28
SYNE1-234ENST00000536990 TCRBV5S4A2TA0A5A2 114 aa13.28□□□□□ -0.28
SYNE1-234ENST00000536990 CUTAO60888 179 aa13.28□□□□□ -0.28
SYNE1-234ENST00000536990 BMP6P22004 513 aa13.28□□□□□ -0.28
SYNE1-234ENST00000536990 CFAP100Q494V2 611 aa13.28□□□□□ -0.28
SYNE1-234ENST00000536990 NFXL1Q6ZNB6 911 aa13.28□□□□□ -0.28
SYNE1-234ENST00000536990 KRBA2Q6ZNG9 492 aa13.28□□□□□ -0.28
SYNE1-234ENST00000536990 ZNF34Q8IZ26 560 aa13.28□□□□□ -0.28
SYNE1-234ENST00000536990 ST7Q9NRC1 585 aa13.28□□□□□ -0.28
SYNE1-234ENST00000536990 FANCLQ9NW38 375 aa13.28□□□□□ -0.28
SYNE1-234ENST00000536990 SLC5A1P13866 664 aa13.27□□□□□ -0.28
SYNE1-234ENST00000536990 FGFR2P21802 821 aa13.27□□□□□ -0.28
SYNE1-234ENST00000536990 MDM2Q00987 491 aaPredicted RBP13.27□□□□□ -0.28
SYNE1-234ENST00000536990 PDE4BQ07343 736 aa13.27□□□□□ -0.28
SYNE1-234ENST00000536990 GOLGA8FQ08AF8 430 aa13.27□□□□□ -0.28
SYNE1-234ENST00000536990 GOLGA8DPQ0D2H9 430 aa13.27□□□□□ -0.28
SYNE1-234ENST00000536990 ARHGAP29Q52LW3 1261 aa13.27□□□□□ -0.28
SYNE1-234ENST00000536990 FCHSD1Q86WN1 690 aa13.27□□□□□ -0.28
SYNE1-234ENST00000536990 MICU3Q86XE3 530 aa13.27□□□□□ -0.28
SYNE1-234ENST00000536990 PCDHA5Q9Y5H7 936 aa13.27□□□□□ -0.28
SYNE1-234ENST00000536990 STRCQ7RTU9 1775 aa13.27□□□□□ -0.29
SYNE1-234ENST00000536990 ZBTB43O43298 467 aa13.27□□□□□ -0.29
SYNE1-234ENST00000536990 GNL2Q13823 731 aaKnown RBP13.27□□□□□ -0.29
SYNE1-234ENST00000536990 BMS1Q14692 1282 aaKnown RBP13.27□□□□□ -0.29
SYNE1-234ENST00000536990 ALX1Q15699 326 aa13.27□□□□□ -0.29
SYNE1-234ENST00000536990 SGMS1Q86VZ5 419 aa13.27□□□□□ -0.29
SYNE1-234ENST00000536990 SPATA5Q8NB90 893 aa13.27□□□□□ -0.29
SYNE1-234ENST00000536990 LY9Q9HBG7 655 aa13.27□□□□□ -0.29
SYNE1-234ENST00000536990 KCNH3Q9ULD8 1083 aa13.27□□□□□ -0.29
SYNE1-234ENST00000536990 NHSL1Q5SYE7 1610 aa13.26□□□□□ -0.29
SYNE1-234ENST00000536990 PATL2C9JE40 543 aaKnown RBP13.26□□□□□ -0.29
SYNE1-234ENST00000536990 UBE2Q2LH0YL09 131 aa13.26□□□□□ -0.29
SYNE1-234ENST00000536990 MAP3K12Q12852 859 aa13.26□□□□□ -0.29
SYNE1-234ENST00000536990 TBX2Q13207 712 aaPredicted RBP13.26□□□□□ -0.29
SYNE1-234ENST00000536990 PTPN21Q16825 1174 aa13.26□□□□□ -0.29
SYNE1-234ENST00000536990 OLFM4Q6UX06 510 aa13.26□□□□□ -0.29
SYNE1-234ENST00000536990 UTP14AQ9BVJ6 771 aaKnown RBP13.26□□□□□ -0.29
SYNE1-234ENST00000536990 NAPBQ9H115 298 aa13.26□□□□□ -0.29
SYNE1-234ENST00000536990 TAOK2Q9UL54 1235 aa13.26□□□□□ -0.29
SYNE1-234ENST00000536990 DISP2A7MBM2 1401 aa13.26□□□□□ -0.29
SYNE1-234ENST00000536990 TOP1P11387 765 aaKnown RBP13.26□□□□□ -0.29
SYNE1-234ENST00000536990 IARSP41252 1262 aaKnown RBP13.26□□□□□ -0.29
SYNE1-234ENST00000536990 TMEM67Q5HYA8 995 aa13.26□□□□□ -0.29
SYNE1-234ENST00000536990 ELOA2Q8IYF1 753 aaPredicted RBP13.26□□□□□ -0.29
SYNE1-234ENST00000536990 IFNL3Q8IZI9 196 aa13.26□□□□□ -0.29
SYNE1-234ENST00000536990 MAGEB6Q8N7X4 407 aa13.26□□□□□ -0.29
SYNE1-234ENST00000536990 AK7Q96M32 723 aa13.26□□□□□ -0.29
SYNE1-234ENST00000536990 MPHOSPH8Q99549 860 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms