RNA–Protein interactions for RNA: ENST00000536212.1

VPS33A-203, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-203ENST00000536212 TMEM94Q12767 1356 aa6.79□□□□□ -1.32
VPS33A-203ENST00000536212 USP17L3A6NCW0 530 aa6.78□□□□□ -1.32
VPS33A-203ENST00000536212 USP17L4A6NCW7 530 aa6.78□□□□□ -1.32
VPS33A-203ENST00000536212 NEURL1BA8MQ27 555 aa6.78□□□□□ -1.32
VPS33A-203ENST00000536212 USP17L5A8MUK1 530 aa6.78□□□□□ -1.32
VPS33A-203ENST00000536212 FIBPO43427 364 aa6.78□□□□□ -1.32
VPS33A-203ENST00000536212 ATP5JP18859 108 aa6.78□□□□□ -1.32
VPS33A-203ENST00000536212 GTF2F1P35269 517 aaKnown RBP eCLIP6.78□□□□□ -1.32
VPS33A-203ENST00000536212 RFX5P48382 616 aaPredicted RBP6.78□□□□□ -1.32
VPS33A-203ENST00000536212 KRT85P78386 507 aa6.78□□□□□ -1.32
VPS33A-203ENST00000536212 TOB2Q14106 344 aaPredicted RBP6.78□□□□□ -1.32
VPS33A-203ENST00000536212 FOXD4L6Q3SYB3 417 aaPredicted RBP6.78□□□□□ -1.32
VPS33A-203ENST00000536212 RABL6Q3YEC7 729 aaPredicted RBP6.78□□□□□ -1.32
VPS33A-203ENST00000536212 ESCO1Q5FWF5 840 aa6.78□□□□□ -1.32
VPS33A-203ENST00000536212 RNF20Q5VTR2 975 aa6.78□□□□□ -1.32
VPS33A-203ENST00000536212 BLOC1S2Q6QNY1 142 aa6.78□□□□□ -1.32
VPS33A-203ENST00000536212 USP17L2Q6R6M4 530 aa6.78□□□□□ -1.32
VPS33A-203ENST00000536212 FOXD4L3Q6VB84 417 aaPredicted RBP6.78□□□□□ -1.32
VPS33A-203ENST00000536212 RBM43Q6ZSC3 357 aaKnown RBP6.78□□□□□ -1.32
VPS33A-203ENST00000536212 USP17L1Q7RTZ2 530 aa6.78□□□□□ -1.32
VPS33A-203ENST00000536212 LRP10Q7Z4F1 713 aa6.78□□□□□ -1.32
VPS33A-203ENST00000536212 TTC6Q86TZ1 520 aa6.78□□□□□ -1.32
VPS33A-203ENST00000536212 RNF135Q8IUD6 432 aa6.78□□□□□ -1.32
VPS33A-203ENST00000536212 PRIMPOLQ96LW4 560 aa6.78□□□□□ -1.32
VPS33A-203ENST00000536212 METTL22Q9BUU2 404 aaPredicted RBP6.78□□□□□ -1.32
VPS33A-203ENST00000536212 KLF16Q9BXK1 252 aaPredicted RBP6.78□□□□□ -1.32
VPS33A-203ENST00000536212 VRTNQ9H8Y1 702 aa6.78□□□□□ -1.32
VPS33A-203ENST00000536212 DNMT3AQ9Y6K1 912 aaPredicted RBP6.78□□□□□ -1.32
VPS33A-203ENST00000536212 IVNS1ABPQ9Y6Y0 642 aa6.78□□□□□ -1.32
VPS33A-203ENST00000536212 A0A0D9SFI3 127 aa6.77□□□□□ -1.33
VPS33A-203ENST00000536212 PRAMEF22A3QJZ6 481 aa6.77□□□□□ -1.33
VPS33A-203ENST00000536212 CARNS1A5YM72 827 aa6.77□□□□□ -1.33
VPS33A-203ENST00000536212 AP5Z1O43299 807 aa6.77□□□□□ -1.33
VPS33A-203ENST00000536212 MAN1A2O60476 641 aa6.77□□□□□ -1.33
VPS33A-203ENST00000536212 TAF5LO75529 589 aa6.77□□□□□ -1.33
VPS33A-203ENST00000536212 CCDC192P0DO97 292 aa6.77□□□□□ -1.33
VPS33A-203ENST00000536212 VARSP26640 1264 aaKnown RBP6.77□□□□□ -1.33
VPS33A-203ENST00000536212 WDR4P57081 412 aaKnown RBP6.77□□□□□ -1.33
VPS33A-203ENST00000536212 HMGN5P82970 282 aaKnown RBP6.77□□□□□ -1.33
VPS33A-203ENST00000536212 GCKRQ14397 625 aa6.77□□□□□ -1.33
VPS33A-203ENST00000536212 KRT32Q14532 448 aa6.77□□□□□ -1.33
VPS33A-203ENST00000536212 NOLC1Q14978 699 aaKnown RBP eCLIP6.77□□□□□ -1.33
VPS33A-203ENST00000536212 LARP1BQ659C4 914 aaKnown RBP6.77□□□□□ -1.33
VPS33A-203ENST00000536212 GIMAP6Q6P9H5 292 aa6.77□□□□□ -1.33
VPS33A-203ENST00000536212 NECAB1Q8N987 351 aa6.77□□□□□ -1.33
VPS33A-203ENST00000536212 MYRIPQ8NFW9 859 aa6.77□□□□□ -1.33
VPS33A-203ENST00000536212 FAM174AQ8TBP5 190 aa6.77□□□□□ -1.33
VPS33A-203ENST00000536212 CCDC8Q9H0W5 538 aaPredicted RBP6.77□□□□□ -1.33
VPS33A-203ENST00000536212 TLR7Q9NYK1 1049 aaKnown RBP6.77□□□□□ -1.33
VPS33A-203ENST00000536212 ZNF142P52746 1687 aaPredicted RBP6.77□□□□□ -1.33
VPS33A-203ENST00000536212 KDM6AO15550 1401 aaPredicted RBP6.76□□□□□ -1.33
VPS33A-203ENST00000536212 TRPM3Q9HCF6 1732 aaPredicted RBP6.76□□□□□ -1.33
VPS33A-203ENST00000536212 MAGEB6P1A0A0J9YX57 407 aa6.76□□□□□ -1.33
VPS33A-203ENST00000536212 KRT76Q01546 638 aa6.76□□□□□ -1.33
VPS33A-203ENST00000536212 RESTQ13127 1097 aa6.76□□□□□ -1.33
VPS33A-203ENST00000536212 COL9A3Q14050 684 aaPredicted RBP6.76□□□□□ -1.33
VPS33A-203ENST00000536212 AGERQ15109 404 aa6.76□□□□□ -1.33
VPS33A-203ENST00000536212 EPHA10Q5JZY3 1008 aa6.76□□□□□ -1.33
VPS33A-203ENST00000536212 ZNF790Q6PG37 636 aa6.76□□□□□ -1.33
VPS33A-203ENST00000536212 CDC37L1Q7L3B6 337 aa6.76□□□□□ -1.33
VPS33A-203ENST00000536212 BPHLQ86WA6 291 aaPredicted RBP6.76□□□□□ -1.33
VPS33A-203ENST00000536212 DZIP3Q86Y13 1208 aaKnown RBP6.76□□□□□ -1.33
VPS33A-203ENST00000536212 KIAA1524Q8TCG1 905 aa6.76□□□□□ -1.33
VPS33A-203ENST00000536212 FAM200AQ8TCP9 573 aa6.76□□□□□ -1.33
VPS33A-203ENST00000536212 XAGE3Q8WTP9 111 aa6.76□□□□□ -1.33
VPS33A-203ENST00000536212 BAP1Q92560 729 aa6.76□□□□□ -1.33
VPS33A-203ENST00000536212 FSD1Q9BTV5 496 aa6.76□□□□□ -1.33
VPS33A-203ENST00000536212 SCAND2PQ9GZW5 306 aaPredicted RBP6.76□□□□□ -1.33
VPS33A-203ENST00000536212 BOLA2Q9H3K6 86 aa6.76□□□□□ -1.33
VPS33A-203ENST00000536212 SLC52A2Q9HAB3 445 aa6.76□□□□□ -1.33
VPS33A-203ENST00000536212 DDX19AQ9NUU7 478 aaKnown RBP6.76□□□□□ -1.33
VPS33A-203ENST00000536212 RGPD2P0DJD1 1756 aa6.76□□□□□ -1.33
VPS33A-203ENST00000536212 NPHP3Q7Z494 1330 aa6.76□□□□□ -1.33
VPS33A-203ENST00000536212 VPS37CA5D8V6 355 aaPredicted RBP6.75□□□□□ -1.33
VPS33A-203ENST00000536212 PHKG2P15735 406 aa6.75□□□□□ -1.33
VPS33A-203ENST00000536212 LIG1P18858 919 aa6.75□□□□□ -1.33
VPS33A-203ENST00000536212 KCNJ4P48050 445 aa6.75□□□□□ -1.33
VPS33A-203ENST00000536212 CASP7P55210 303 aa6.75□□□□□ -1.33
VPS33A-203ENST00000536212 PTPN12Q05209 780 aaKnown RBP6.75□□□□□ -1.33
VPS33A-203ENST00000536212 TYRO3Q06418 890 aa6.75□□□□□ -1.33
VPS33A-203ENST00000536212 NEXNQ0ZGT2 675 aa6.75□□□□□ -1.33
VPS33A-203ENST00000536212 MAP3K11Q16584 847 aa6.75□□□□□ -1.33
VPS33A-203ENST00000536212 TNNI3KQ59H18 835 aa6.75□□□□□ -1.33
VPS33A-203ENST00000536212 XP32Q5T750 250 aa6.75□□□□□ -1.33
VPS33A-203ENST00000536212 GPAT2Q6NUI2 795 aa6.75□□□□□ -1.33
VPS33A-203ENST00000536212 SND1Q7KZF4 910 aaKnown RBP eCLIP6.75□□□□□ -1.33
VPS33A-203ENST00000536212 SH3RF1Q7Z6J0 888 aa6.75□□□□□ -1.33
VPS33A-203ENST00000536212 ZNF589Q86UQ0 364 aaPredicted RBP6.75□□□□□ -1.33
VPS33A-203ENST00000536212 ZNF511Q8NB15 262 aa6.75□□□□□ -1.33
VPS33A-203ENST00000536212 SMARCC2Q8TAQ2 1214 aa6.75□□□□□ -1.33
VPS33A-203ENST00000536212 LEO1Q8WVC0 666 aaPredicted RBP6.75□□□□□ -1.33
VPS33A-203ENST00000536212 ORAI2Q96SN7 254 aa6.75□□□□□ -1.33
VPS33A-203ENST00000536212 HAUS7Q99871 368 aa6.75□□□□□ -1.33
VPS33A-203ENST00000536212 LLPHQ9BRT6 129 aaKnown RBP6.75□□□□□ -1.33
VPS33A-203ENST00000536212 NUP62CLQ9H1M0 184 aa6.75□□□□□ -1.33
VPS33A-203ENST00000536212 CLSTN2Q9H4D0 955 aa6.75□□□□□ -1.33
VPS33A-203ENST00000536212 TTC12Q9H892 705 aaPredicted RBP6.75□□□□□ -1.33
VPS33A-203ENST00000536212 MRVI1Q9Y6F6 885 aa6.75□□□□□ -1.33
VPS33A-203ENST00000536212 TAF6LQ9Y6J9 622 aa6.75□□□□□ -1.33
VPS33A-203ENST00000536212 FPGT-TNNI3KV9GXZ4 949 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms