RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 E2F4Q16254 413 aa10.57□□□□□ -0.72
CD44-232ENST00000531118 NECAB2Q7Z6G3 386 aa10.57□□□□□ -0.72
CD44-232ENST00000531118 ZKSCAN4Q969J2 545 aaPredicted RBP10.57□□□□□ -0.72
CD44-232ENST00000531118 PARK7Q99497 189 aaKnown RBP10.57□□□□□ -0.72
CD44-232ENST00000531118 SERPINA10Q9UK55 444 aa10.57□□□□□ -0.72
CD44-232ENST00000531118 MAP3K2Q9Y2U5 619 aa10.57□□□□□ -0.72
CD44-232ENST00000531118 LTBP2Q14767 1821 aa10.56□□□□□ -0.72
CD44-232ENST00000531118 DOCK1Q14185 1865 aa10.56□□□□□ -0.72
CD44-232ENST00000531118 DDX58O95786 925 aaKnown RBP10.56□□□□□ -0.72
CD44-232ENST00000531118 PPATQ06203 517 aa10.56□□□□□ -0.72
CD44-232ENST00000531118 NEUROD2Q15784 382 aa10.56□□□□□ -0.72
CD44-232ENST00000531118 MFSD14BQ5SR56 506 aa10.56□□□□□ -0.72
CD44-232ENST00000531118 UBE3BQ7Z3V4 1068 aa10.56□□□□□ -0.72
CD44-232ENST00000531118 DZIP1LQ8IYY4 767 aaKnown RBP10.56□□□□□ -0.72
CD44-232ENST00000531118 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.56□□□□□ -0.72
CD44-232ENST00000531118 MBIPQ9NS73 344 aa10.56□□□□□ -0.72
CD44-232ENST00000531118 TTF2Q9UNY4 1162 aaKnown RBP10.56□□□□□ -0.72
CD44-232ENST00000531118 KCNH4Q9UQ05 1017 aa10.56□□□□□ -0.72
CD44-232ENST00000531118 PHIPQ8WWQ0 1821 aa10.56□□□□□ -0.72
CD44-232ENST00000531118 TAF5LO75529 589 aa10.55□□□□□ -0.72
CD44-232ENST00000531118 CRKP46108 304 aa10.55□□□□□ -0.72
CD44-232ENST00000531118 FLT3LGP49771 235 aa10.55□□□□□ -0.72
CD44-232ENST00000531118 MOGSQ13724 837 aa10.55□□□□□ -0.72
CD44-232ENST00000531118 CWF19L2Q2TBE0 894 aaKnown RBP10.55□□□□□ -0.72
CD44-232ENST00000531118 ANKLE1Q8NAG6 615 aa10.55□□□□□ -0.72
CD44-232ENST00000531118 PXYLP1Q8TE99 480 aa10.55□□□□□ -0.72
CD44-232ENST00000531118 PLA2G12BQ9BX93 195 aa10.55□□□□□ -0.72
CD44-232ENST00000531118 UBE2OQ9C0C9 1292 aaKnown RBP10.55□□□□□ -0.72
CD44-232ENST00000531118 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.55□□□□□ -0.72
CD44-232ENST00000531118 NCOR1O75376 2440 aa10.55□□□□□ -0.72
CD44-232ENST00000531118 MUC3AQ02505 3323 aa10.55□□□□□ -0.72
CD44-232ENST00000531118 PLXNB2O15031 1838 aa10.54□□□□□ -0.72
CD44-232ENST00000531118 NEURL1BA8MQ27 555 aa10.54□□□□□ -0.72
CD44-232ENST00000531118 CYP2C8P10632 490 aa10.54□□□□□ -0.72
CD44-232ENST00000531118 CACNB3P54284 484 aa10.54□□□□□ -0.72
CD44-232ENST00000531118 IRF5Q13568 498 aa10.54□□□□□ -0.72
CD44-232ENST00000531118 CCDC146Q8IYE0 955 aa10.54□□□□□ -0.72
CD44-232ENST00000531118 LOC285556D6RIA3 1793 aa10.54□□□□□ -0.72
CD44-232ENST00000531118 CDH23Q9H251 3354 aa10.54□□□□□ -0.72
CD44-232ENST00000531118 PRUNE2Q8WUY3 3088 aa10.54□□□□□ -0.72
CD44-232ENST00000531118 TNPO2O14787 897 aaKnown RBP10.53□□□□□ -0.72
CD44-232ENST00000531118 COL9A1P20849 921 aa10.53□□□□□ -0.72
CD44-232ENST00000531118 INPP5BP32019 993 aa10.53□□□□□ -0.72
CD44-232ENST00000531118 NEXNQ0ZGT2 675 aa10.53□□□□□ -0.72
CD44-232ENST00000531118 DCAF15Q66K64 600 aa10.53□□□□□ -0.72
CD44-232ENST00000531118 FAM109BQ6ICB4 259 aaPredicted RBP10.53□□□□□ -0.72
CD44-232ENST00000531118 KSR2Q6VAB6 950 aa10.53□□□□□ -0.72
CD44-232ENST00000531118 FAM161BQ96MY7 647 aa10.53□□□□□ -0.72
CD44-232ENST00000531118 ZNF341Q9BYN7 854 aa10.53□□□□□ -0.72
CD44-232ENST00000531118 ANKRD18BA2A2Z9 1011 aa10.52□□□□□ -0.73
CD44-232ENST00000531118 PI4KAP2A4QPH2 592 aa10.52□□□□□ -0.73
CD44-232ENST00000531118 H7C1W4 665 aa10.52□□□□□ -0.73
CD44-232ENST00000531118 CSF1RP07333 972 aa10.52□□□□□ -0.73
CD44-232ENST00000531118 CASP7P55210 303 aa10.52□□□□□ -0.73
CD44-232ENST00000531118 PI4KAP1Q8N8J0 262 aa10.52□□□□□ -0.73
CD44-232ENST00000531118 HOOK2Q96ED9 719 aa10.52□□□□□ -0.73
CD44-232ENST00000531118 C11orf49Q9H6J7 331 aa10.52□□□□□ -0.73
CD44-232ENST00000531118 TMOD2Q9NZR1 351 aa10.52□□□□□ -0.73
CD44-232ENST00000531118 PFASO15067 1338 aa10.52□□□□□ -0.73
CD44-232ENST00000531118 CACNA1FO60840 1977 aa10.52□□□□□ -0.73
CD44-232ENST00000531118 ELL2O00472 640 aaPredicted RBP10.51□□□□□ -0.73
CD44-232ENST00000531118 GRIK5Q16478 980 aa10.51□□□□□ -0.73
CD44-232ENST00000531118 NOL9Q5SY16 702 aaKnown RBP10.51□□□□□ -0.73
CD44-232ENST00000531118 ZNF697Q5TEC3 545 aa10.51□□□□□ -0.73
CD44-232ENST00000531118 GPAT2Q6NUI2 795 aa10.51□□□□□ -0.73
CD44-232ENST00000531118 FAM83AQ86UY5 434 aa10.51□□□□□ -0.73
CD44-232ENST00000531118 TDRD7Q8NHU6 1098 aaKnown RBP10.51□□□□□ -0.73
CD44-232ENST00000531118 MAFAQ8NHW3 353 aaPredicted RBP10.51□□□□□ -0.73
CD44-232ENST00000531118 NBPF3Q9H094 633 aa10.51□□□□□ -0.73
CD44-232ENST00000531118 ARIH1Q9Y4X5 557 aaPredicted RBP10.51□□□□□ -0.73
CD44-232ENST00000531118 LAMA2P24043 3122 aaKnown RBP10.51□□□□□ -0.73
CD44-232ENST00000531118 HMGCRP04035 888 aa10.5□□□□□ -0.73
CD44-232ENST00000531118 ZNF853P0CG23 659 aa10.5□□□□□ -0.73
CD44-232ENST00000531118 HOXB3P14651 431 aaPredicted RBP10.5□□□□□ -0.73
CD44-232ENST00000531118 KCNV2Q8TDN2 545 aa10.5□□□□□ -0.73
CD44-232ENST00000531118 ZSWIM6Q9HCJ5 1215 aa10.5□□□□□ -0.73
CD44-232ENST00000531118 RAPGEFL1Q9UHV5 662 aa10.5□□□□□ -0.73
CD44-232ENST00000531118 ATAD5Q96QE3 1844 aa10.49□□□□□ -0.73
CD44-232ENST00000531118 PLA2G5P39877 138 aa10.49□□□□□ -0.73
CD44-232ENST00000531118 GYG1P46976 350 aa10.49□□□□□ -0.73
CD44-232ENST00000531118 GCKRQ14397 625 aa10.49□□□□□ -0.73
CD44-232ENST00000531118 FKBP1CQ5VVH2 108 aa10.49□□□□□ -0.73
CD44-232ENST00000531118 CCDC30Q5VVM6 783 aa10.49□□□□□ -0.73
CD44-232ENST00000531118 MIGA2Q7L4E1 593 aa10.49□□□□□ -0.73
CD44-232ENST00000531118 CCER1Q8TC90 406 aaPredicted RBP10.49□□□□□ -0.73
CD44-232ENST00000531118 OXER1Q8TDS5 423 aa10.49□□□□□ -0.73
CD44-232ENST00000531118 PTCD2Q8WV60 388 aaKnown RBP10.49□□□□□ -0.73
CD44-232ENST00000531118 TEKT1Q969V4 418 aa10.49□□□□□ -0.73
CD44-232ENST00000531118 IFT57Q9NWB7 429 aa10.49□□□□□ -0.73
CD44-232ENST00000531118 A0A0G2JLL6 359 aaPredicted RBP10.48□□□□□ -0.73
CD44-232ENST00000531118 TBC1D12O60347 775 aa10.48□□□□□ -0.73
CD44-232ENST00000531118 HDLBPQ00341 1268 aaKnown RBP10.48□□□□□ -0.73
CD44-232ENST00000531118 MDM2Q00987 491 aaPredicted RBP10.48□□□□□ -0.73
CD44-232ENST00000531118 IFIT5Q13325 482 aaKnown RBP10.48□□□□□ -0.73
CD44-232ENST00000531118 PRRT2Q7Z6L0 340 aaPredicted RBP10.48□□□□□ -0.73
CD44-232ENST00000531118 C8orf58Q8NAV2 365 aa10.48□□□□□ -0.73
CD44-232ENST00000531118 RUNDC1Q96C34 613 aa10.48□□□□□ -0.73
CD44-232ENST00000531118 CDX2Q99626 313 aaPredicted RBP10.48□□□□□ -0.73
CD44-232ENST00000531118 ZNF112Q9UJU3 913 aa10.48□□□□□ -0.73
CD44-232ENST00000531118 CXCL11O14625 94 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms