RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	TGFBRAP1	Q8WUH2	860 aa		24.96	■■□□□ 1.59
CD44-222	ENST00000526025	OSBPL5	Q9H0X9	879 aa	Predicted RBP	24.96	■■□□□ 1.59
CD44-222	ENST00000526025	SSC5D	A1L4H1	1573 aa		24.96	■■□□□ 1.59
CD44-222	ENST00000526025	GNAT2	P19087	354 aa		24.95	■■□□□ 1.58
CD44-222	ENST00000526025	TCP10	Q12799	353 aa		24.95	■■□□□ 1.58
CD44-222	ENST00000526025	SKAP1	Q86WV1	359 aa		24.95	■■□□□ 1.58
CD44-222	ENST00000526025	STRBP	Q96SI9	672 aa	Known RBP	24.95	■■□□□ 1.58
CD44-222	ENST00000526025	DHX36	Q9H2U1	1008 aa	Known RBP	24.95	■■□□□ 1.58
CD44-222	ENST00000526025	ARMT1	Q9H993	441 aa		24.95	■■□□□ 1.58
CD44-222	ENST00000526025	GPAA1	O43292	621 aa		24.94	■■□□□ 1.58
CD44-222	ENST00000526025	CELF2	O95319	508 aa	Known RBP	24.94	■■□□□ 1.58
CD44-222	ENST00000526025	USP5	P45974	858 aa		24.94	■■□□□ 1.58
CD44-222	ENST00000526025	PICALM	Q13492	652 aa		24.94	■■□□□ 1.58
CD44-222	ENST00000526025	CST9	Q5W186	159 aa		24.94	■■□□□ 1.58
CD44-222	ENST00000526025	ATP8A2	Q9NTI2	1148 aa		24.94	■■□□□ 1.58
CD44-222	ENST00000526025	MKRN1	Q9UHC7	482 aa	Known RBP	24.94	■■□□□ 1.58
CD44-222	ENST00000526025	BAZ2A	Q9UIF9	1905 aa	Known RBP	24.94	■■□□□ 1.58
CD44-222	ENST00000526025	TMEM88B	A6NKF7	163 aa		24.93	■■□□□ 1.58
CD44-222	ENST00000526025		M0R2C6	588 aa		24.93	■■□□□ 1.58
CD44-222	ENST00000526025	FMR1	Q06787	632 aa	Known RBP eCLIP	24.93	■■□□□ 1.58
CD44-222	ENST00000526025	MCMDC2	Q4G0Z9	681 aa		24.93	■■□□□ 1.58
CD44-222	ENST00000526025	NBPF12	Q5TAG4	269 aa	Predicted RBP	24.93	■■□□□ 1.58
CD44-222	ENST00000526025	GIMAP6	Q6P9H5	292 aa		24.93	■■□□□ 1.58
CD44-222	ENST00000526025	DLK2	Q6UY11	383 aa		24.93	■■□□□ 1.58
CD44-222	ENST00000526025	DIAPH3	Q9NSV4	1193 aa		24.93	■■□□□ 1.58
CD44-222	ENST00000526025	SIPA1L1	O43166	1804 aa		24.93	■■□□□ 1.58
CD44-222	ENST00000526025	PRAMEF18	Q5VWM3	479 aa		24.92	■■□□□ 1.58
CD44-222	ENST00000526025	SH3BP5L	Q7L8J4	393 aa		24.92	■■□□□ 1.58
CD44-222	ENST00000526025	MAPKAPK5	Q8IW41	473 aa		24.92	■■□□□ 1.58
CD44-222	ENST00000526025	ZFPM1	Q8IX07	1006 aa		24.92	■■□□□ 1.58
CD44-222	ENST00000526025	CREBZF	Q9NS37	354 aa		24.92	■■□□□ 1.58
CD44-222	ENST00000526025		A0A0D9SFI3	127 aa		24.91	■■□□□ 1.58
CD44-222	ENST00000526025	NMI	Q13287	307 aa	Predicted RBP	24.91	■■□□□ 1.58
CD44-222	ENST00000526025	MAP3K11	Q16584	847 aa		24.91	■■□□□ 1.58
CD44-222	ENST00000526025	FAM227B	Q96M60	508 aa		24.91	■■□□□ 1.58
CD44-222	ENST00000526025	GBA2	Q9HCG7	927 aa	Predicted RBP	24.91	■■□□□ 1.58
CD44-222	ENST00000526025	TAOK2	Q9UL54	1235 aa		24.91	■■□□□ 1.58
CD44-222	ENST00000526025	RAD50	Q92878	1312 aa		24.9	■■□□□ 1.58
CD44-222	ENST00000526025	UNCX	A6NJT0	531 aa		24.9	■■□□□ 1.58
CD44-222	ENST00000526025	PPP1R12B	O60237	982 aa	Predicted RBP	24.9	■■□□□ 1.58
CD44-222	ENST00000526025	HSPA6	P17066	643 aa		24.9	■■□□□ 1.58
CD44-222	ENST00000526025	MFAP1	P55081	439 aa	Known RBP	24.9	■■□□□ 1.58
CD44-222	ENST00000526025	MAP3K10	Q02779	954 aa		24.9	■■□□□ 1.58
CD44-222	ENST00000526025	DCAF15	Q66K64	600 aa		24.9	■■□□□ 1.58
CD44-222	ENST00000526025	CDAN1	Q8IWY9	1227 aa		24.9	■■□□□ 1.58
CD44-222	ENST00000526025	C2orf69	Q8N8R5	385 aa		24.9	■■□□□ 1.58
CD44-222	ENST00000526025	DDRGK1	Q96HY6	314 aa		24.9	■■□□□ 1.58
CD44-222	ENST00000526025	CSRNP1	Q96S65	589 aa		24.9	■■□□□ 1.58
CD44-222	ENST00000526025	SEC62	Q99442	399 aa	Known RBP	24.9	■■□□□ 1.58
CD44-222	ENST00000526025	ZNF408	Q9H9D4	720 aa		24.9	■■□□□ 1.58
CD44-222	ENST00000526025	DCP1A	Q9NPI6	582 aa	Predicted RBP	24.9	■■□□□ 1.58
CD44-222	ENST00000526025	SLC4A4	Q9Y6R1	1079 aa		24.9	■■□□□ 1.58
CD44-222	ENST00000526025	OTOF	Q9HC10	1997 aa		24.89	■■□□□ 1.58
CD44-222	ENST00000526025	DDTL	A6NHG4	134 aa	Predicted RBP	24.89	■■□□□ 1.58
CD44-222	ENST00000526025	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	24.89	■■□□□ 1.58
CD44-222	ENST00000526025	SDR42E1	Q8WUS8	393 aa		24.89	■■□□□ 1.58
CD44-222	ENST00000526025	PI4KB	Q9UBF8	816 aa		24.89	■■□□□ 1.58
CD44-222	ENST00000526025	LAMB1	P07942	1786 aa		24.89	■■□□□ 1.57
CD44-222	ENST00000526025	TBC1D12	O60347	775 aa		24.88	■■□□□ 1.57
CD44-222	ENST00000526025	CHML	P26374	656 aa		24.88	■■□□□ 1.57
CD44-222	ENST00000526025	ARMC9	Q7Z3E5	817 aa		24.88	■■□□□ 1.57
CD44-222	ENST00000526025	METTL16	Q86W50	562 aa	Known RBP	24.88	■■□□□ 1.57
CD44-222	ENST00000526025	RUFY2	Q8WXA3	655 aa		24.88	■■□□□ 1.57
CD44-222	ENST00000526025	CCDC171	Q6TFL3	1326 aa		24.87	■■□□□ 1.57
CD44-222	ENST00000526025	GSG1L2	A8MUP6	293 aa		24.87	■■□□□ 1.57
CD44-222	ENST00000526025	PATL2	C9JE40	543 aa	Known RBP	24.87	■■□□□ 1.57
CD44-222	ENST00000526025	PRKAB2	O43741	272 aa		24.87	■■□□□ 1.57
CD44-222	ENST00000526025	HHIPL1	Q96JK4	782 aa		24.87	■■□□□ 1.57
CD44-222	ENST00000526025	EHD4	Q9H223	541 aa		24.87	■■□□□ 1.57
CD44-222	ENST00000526025	TLL2	Q9Y6L7	1015 aa		24.87	■■□□□ 1.57
CD44-222	ENST00000526025	HLA-DOA	P06340	250 aa		24.86	■■□□□ 1.57
CD44-222	ENST00000526025	CWC27	Q6UX04	472 aa	Known RBP	24.86	■■□□□ 1.57
CD44-222	ENST00000526025	TTC6	Q86TZ1	520 aa		24.86	■■□□□ 1.57
CD44-222	ENST00000526025	FOXP4	Q8IVH2	680 aa	Predicted RBP	24.86	■■□□□ 1.57
CD44-222	ENST00000526025	NACAP1	Q9BZK3	213 aa		24.86	■■□□□ 1.57
CD44-222	ENST00000526025	HERC5	Q9UII4	1024 aa	Known RBP	24.86	■■□□□ 1.57
CD44-222	ENST00000526025	IREB2	P48200	963 aa	Known RBP	24.85	■■□□□ 1.57
CD44-222	ENST00000526025	SAPCD2	Q86UD0	394 aa		24.85	■■□□□ 1.57
CD44-222	ENST00000526025	ZNF341	Q9BYN7	854 aa		24.85	■■□□□ 1.57
CD44-222	ENST00000526025	MCM9	Q9NXL9	1143 aa		24.85	■■□□□ 1.57
CD44-222	ENST00000526025	ARPP21	Q9UBL0	812 aa	Predicted RBP	24.85	■■□□□ 1.57
CD44-222	ENST00000526025	PALD1	Q9ULE6	856 aa		24.85	■■□□□ 1.57
CD44-222	ENST00000526025	GTF3C3	Q9Y5Q9	886 aa		24.85	■■□□□ 1.57
CD44-222	ENST00000526025	MYH8	P13535	1937 aa		24.84	■■□□□ 1.57
CD44-222	ENST00000526025	USP2	O75604	605 aa	Predicted RBP	24.84	■■□□□ 1.57
CD44-222	ENST00000526025	SBK1	Q52WX2	424 aa		24.84	■■□□□ 1.57
CD44-222	ENST00000526025	CCDC129	Q6ZRS4	1044 aa		24.84	■■□□□ 1.57
CD44-222	ENST00000526025	ZNF589	Q86UQ0	364 aa	Predicted RBP	24.84	■■□□□ 1.57
CD44-222	ENST00000526025	AMOTL1	Q8IY63	956 aa		24.84	■■□□□ 1.57
CD44-222	ENST00000526025	SAP30BP	Q9UHR5	308 aa	Known RBP	24.84	■■□□□ 1.57
CD44-222	ENST00000526025	ZNF112	Q9UJU3	913 aa		24.84	■■□□□ 1.57
CD44-222	ENST00000526025	ZMYM6	O95789	1325 aa		24.84	■■□□□ 1.57
CD44-222	ENST00000526025	TTLL12	Q14166	644 aa	Predicted RBP	24.83	■■□□□ 1.57
CD44-222	ENST00000526025	ALX1	Q15699	326 aa		24.83	■■□□□ 1.57
CD44-222	ENST00000526025	LDLRAD1	Q5T700	205 aa		24.83	■■□□□ 1.57
CD44-222	ENST00000526025	KLRG1	Q96E93	195 aa		24.83	■■□□□ 1.57
CD44-222	ENST00000526025	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	24.83	■■□□□ 1.57
CD44-222	ENST00000526025	ANGEL1	Q9UNK9	670 aa	Known RBP	24.83	■■□□□ 1.57
CD44-222	ENST00000526025	POLR3D	P05423	398 aa	Predicted RBP	24.82	■■□□□ 1.56
CD44-222	ENST00000526025	IFNL3	Q8IZI9	196 aa		24.82	■■□□□ 1.56

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