RNA–Protein interactions for RNA: ENST00000524356.1

PCM1-223, Transcript of pericentriolar material 1, human

TSL 2

Gene PCM1, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCM1-223	ENST00000524356	FBXO15	Q8NCQ5	510 aa	Predicted RBP	7.76	□□□□□ -1.17
PCM1-223	ENST00000524356	HEXIM2	Q96MH2	286 aa	Known RBP	7.76	□□□□□ -1.17
PCM1-223	ENST00000524356	DISC1	Q9NRI5	854 aa		7.76	□□□□□ -1.17
PCM1-223	ENST00000524356		A0A1W2PP55	124 aa		7.75	□□□□□ -1.17
PCM1-223	ENST00000524356	LIG1	P18858	919 aa		7.75	□□□□□ -1.17
PCM1-223	ENST00000524356	ASB11	Q8WXH4	323 aa		7.75	□□□□□ -1.17
PCM1-223	ENST00000524356	KIRREL1	Q96J84	757 aa		7.75	□□□□□ -1.17
PCM1-223	ENST00000524356	ATXN3L	Q9H3M9	355 aa		7.75	□□□□□ -1.17
PCM1-223	ENST00000524356	KCNK12	Q9HB15	430 aa		7.75	□□□□□ -1.17
PCM1-223	ENST00000524356	ZFYVE28	Q9HCC9	887 aa		7.75	□□□□□ -1.17
PCM1-223	ENST00000524356	TTLL4	Q14679	1199 aa		7.74	□□□□□ -1.17
PCM1-223	ENST00000524356	KCNA10	Q16322	511 aa		7.74	□□□□□ -1.17
PCM1-223	ENST00000524356	SPACA3	Q8IXA5	215 aa		7.74	□□□□□ -1.17
PCM1-223	ENST00000524356	DIRC2	Q96SL1	478 aa		7.74	□□□□□ -1.17
PCM1-223	ENST00000524356	CCDC86	Q9H6F5	360 aa	Known RBP	7.74	□□□□□ -1.17
PCM1-223	ENST00000524356	LIN7B	Q9HAP6	207 aa		7.74	□□□□□ -1.17
PCM1-223	ENST00000524356	PCDHGC5	Q9Y5F6	944 aa		7.74	□□□□□ -1.17
PCM1-223	ENST00000524356	ID3	Q02535	119 aa		7.73	□□□□□ -1.17
PCM1-223	ENST00000524356	TMEM67	Q5HYA8	995 aa		7.73	□□□□□ -1.17
PCM1-223	ENST00000524356	FAM214B	Q7L5A3	538 aa		7.73	□□□□□ -1.17
PCM1-223	ENST00000524356	TOP6BL	Q8N6T0	577 aa		7.73	□□□□□ -1.17
PCM1-223	ENST00000524356	DDX54	Q8TDD1	881 aa	Known RBP	7.73	□□□□□ -1.17
PCM1-223	ENST00000524356	ZNF576	Q9H609	170 aa		7.73	□□□□□ -1.17
PCM1-223	ENST00000524356	NSUN3	Q9H649	340 aa	Known RBP	7.73	□□□□□ -1.17
PCM1-223	ENST00000524356	C19orf73	Q9NVV2	129 aa		7.73	□□□□□ -1.17
PCM1-223	ENST00000524356	ZNF862	O60290	1169 aa		7.72	□□□□□ -1.17
PCM1-223	ENST00000524356	HCLS1	P14317	486 aa	Predicted RBP	7.72	□□□□□ -1.17
PCM1-223	ENST00000524356	SRPK2	P78362	688 aa	Known RBP	7.72	□□□□□ -1.17
PCM1-223	ENST00000524356	ATP2B4	P23634	1241 aa		7.71	□□□□□ -1.18
PCM1-223	ENST00000524356	CIAPIN1	Q6FI81	312 aa		7.71	□□□□□ -1.18
PCM1-223	ENST00000524356	ATG14	Q6ZNE5	492 aa		7.71	□□□□□ -1.18
PCM1-223	ENST00000524356	CYFIP1	Q7L576	1253 aa		7.71	□□□□□ -1.18
PCM1-223	ENST00000524356	RNGTT	O60942	597 aa	Known RBP	7.7	□□□□□ -1.18
PCM1-223	ENST00000524356	NEFM	P07197	916 aa		7.7	□□□□□ -1.18
PCM1-223	ENST00000524356	TMEM253	P0C7T8	217 aa		7.7	□□□□□ -1.18
PCM1-223	ENST00000524356	MED14OS	P0DP75	135 aa		7.7	□□□□□ -1.18
PCM1-223	ENST00000524356	EHHADH	Q08426	723 aa		7.7	□□□□□ -1.18
PCM1-223	ENST00000524356	AP3B2	Q13367	1082 aa		7.7	□□□□□ -1.18
PCM1-223	ENST00000524356	NKPD1	Q17RQ9	610 aa		7.7	□□□□□ -1.18
PCM1-223	ENST00000524356	RELT	Q969Z4	430 aa		7.7	□□□□□ -1.18
PCM1-223	ENST00000524356	ZC3H12C	Q9C0D7	883 aa	Known RBP	7.7	□□□□□ -1.18
PCM1-223	ENST00000524356	PCOLCE2	Q9UKZ9	415 aa		7.7	□□□□□ -1.18
PCM1-223	ENST00000524356	PITPNM2	Q9BZ72	1349 aa		7.69	□□□□□ -1.18
PCM1-223	ENST00000524356	ATG7	O95352	703 aa		7.68	□□□□□ -1.18
PCM1-223	ENST00000524356	SLFN14	P0C7P3	912 aa		7.68	□□□□□ -1.18
PCM1-223	ENST00000524356	ITPKA	P23677	461 aa		7.68	□□□□□ -1.18
PCM1-223	ENST00000524356	KIF4B	Q2VIQ3	1234 aa		7.68	□□□□□ -1.18
PCM1-223	ENST00000524356	GALNT12	Q8IXK2	581 aa		7.68	□□□□□ -1.18
PCM1-223	ENST00000524356	CSRNP1	Q96S65	589 aa		7.68	□□□□□ -1.18
PCM1-223	ENST00000524356	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	7.67	□□□□□ -1.18
PCM1-223	ENST00000524356	KRTAP10-2	P60368	255 aa		7.67	□□□□□ -1.18
PCM1-223	ENST00000524356	MTMR3	Q13615	1198 aa		7.67	□□□□□ -1.18
PCM1-223	ENST00000524356	ISL2	Q96A47	359 aa		7.67	□□□□□ -1.18
PCM1-223	ENST00000524356	TCAF2	A6NFQ2	919 aa		7.66	□□□□□ -1.18
PCM1-223	ENST00000524356	ETV2	O00321	342 aa	Predicted RBP	7.66	□□□□□ -1.18
PCM1-223	ENST00000524356	NUAK1	O60285	661 aa		7.66	□□□□□ -1.18
PCM1-223	ENST00000524356	ALKBH2	Q6NS38	261 aa		7.66	□□□□□ -1.18
PCM1-223	ENST00000524356	CARS2	Q9HA77	564 aa	Known RBP	7.66	□□□□□ -1.18
PCM1-223	ENST00000524356	SMG5	Q9UPR3	1016 aa	Known RBP	7.66	□□□□□ -1.18
PCM1-223	ENST00000524356		A0A0G2JLL6	359 aa	Predicted RBP	7.65	□□□□□ -1.18
PCM1-223	ENST00000524356	IGF2BP3	O00425	579 aa	Known RBP eCLIP	7.65	□□□□□ -1.18
PCM1-223	ENST00000524356	GLDC	P23378	1020 aa		7.65	□□□□□ -1.18
PCM1-223	ENST00000524356	USP5	P45974	858 aa		7.65	□□□□□ -1.18
PCM1-223	ENST00000524356	LINC00310	P59036	64 aa		7.65	□□□□□ -1.18
PCM1-223	ENST00000524356	GJD3	Q8N144	294 aa		7.65	□□□□□ -1.18
PCM1-223	ENST00000524356	GTF3C2	Q8WUA4	911 aa	Predicted RBP	7.65	□□□□□ -1.18
PCM1-223	ENST00000524356	PARD6A	Q9NPB6	346 aa		7.65	□□□□□ -1.18
PCM1-223	ENST00000524356	DCP1A	Q9NPI6	582 aa	Predicted RBP	7.65	□□□□□ -1.18
PCM1-223	ENST00000524356	PODXL2	Q9NZ53	605 aa		7.65	□□□□□ -1.18
PCM1-223	ENST00000524356	FZD6	O60353	706 aa		7.64	□□□□□ -1.19
PCM1-223	ENST00000524356	FOXD2	O60548	495 aa	Predicted RBP	7.64	□□□□□ -1.19
PCM1-223	ENST00000524356	GDNF	P39905	211 aa		7.64	□□□□□ -1.19
PCM1-223	ENST00000524356	EPB41L4B	Q9H329	900 aa		7.64	□□□□□ -1.19
PCM1-223	ENST00000524356	ZNF777	Q9ULD5	760 aa	Predicted RBP	7.64	□□□□□ -1.19
PCM1-223	ENST00000524356	RANGAP1	P46060	587 aa	Predicted RBP	7.63	□□□□□ -1.19
PCM1-223	ENST00000524356	CLCN7	P51798	805 aa		7.63	□□□□□ -1.19
PCM1-223	ENST00000524356	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	7.63	□□□□□ -1.19
PCM1-223	ENST00000524356	GTF2IRD1	Q9UHL9	959 aa		7.63	□□□□□ -1.19
PCM1-223	ENST00000524356	NPR3	P17342	541 aa		7.62	□□□□□ -1.19
PCM1-223	ENST00000524356	FAAP100	Q0VG06	881 aa		7.62	□□□□□ -1.19
PCM1-223	ENST00000524356	AAMP	Q13685	434 aa		7.62	□□□□□ -1.19
PCM1-223	ENST00000524356	KIAA0319	Q5VV43	1072 aa		7.62	□□□□□ -1.19
PCM1-223	ENST00000524356	DBX2	Q6ZNG2	339 aa		7.62	□□□□□ -1.19
PCM1-223	ENST00000524356	IRF2BPL	Q9H1B7	796 aa		7.62	□□□□□ -1.19
PCM1-223	ENST00000524356	KRT82	Q9NSB4	513 aa		7.62	□□□□□ -1.19
PCM1-223	ENST00000524356	ZNF157	P51786	506 aa	Predicted RBP	7.61	□□□□□ -1.19
PCM1-223	ENST00000524356	USPL1	Q5W0Q7	1092 aa		7.61	□□□□□ -1.19
PCM1-223	ENST00000524356	SSU72	Q9NP77	194 aa	Known RBP	7.61	□□□□□ -1.19
PCM1-223	ENST00000524356	CCDC87	Q9NVE4	849 aa		7.61	□□□□□ -1.19
PCM1-223	ENST00000524356	GSTP1	P09211	210 aa	Known RBP	7.6	□□□□□ -1.19
PCM1-223	ENST00000524356	ATP13A1	Q9HD20	1204 aa		7.6	□□□□□ -1.19
PCM1-223	ENST00000524356	ABCB6	Q9NP58	842 aa		7.6	□□□□□ -1.19
PCM1-223	ENST00000524356	PTPN12	Q05209	780 aa	Known RBP	7.59	□□□□□ -1.19
PCM1-223	ENST00000524356	RNF214	Q8ND24	703 aa		7.59	□□□□□ -1.19
PCM1-223	ENST00000524356	EHD4	Q9H223	541 aa		7.59	□□□□□ -1.19
PCM1-223	ENST00000524356	PRDM10	Q9NQV6	1147 aa		7.59	□□□□□ -1.19
PCM1-223	ENST00000524356	SEMA3G	Q9NS98	782 aa		7.59	□□□□□ -1.19
PCM1-223	ENST00000524356	SUPT5H	O00267	1087 aa	Known RBP	7.58	□□□□□ -1.2
PCM1-223	ENST00000524356	ZC3H12A	Q5D1E8	599 aa	Known RBP	7.58	□□□□□ -1.2
PCM1-223	ENST00000524356	PDZD3	Q86UT5	571 aa		7.58	□□□□□ -1.2

Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms