RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 CYP8B1Q9UNU6 501 aa10.71□□□□□ -0.69
SDCBP-208ENST00000520228 RAPGEF6Q8TEU7 1601 aa10.7□□□□□ -0.7
SDCBP-208ENST00000520228 MAP3K11Q16584 847 aa10.7□□□□□ -0.7
SDCBP-208ENST00000520228 PHC3Q8NDX5 983 aa10.7□□□□□ -0.7
SDCBP-208ENST00000520228 GRIN3AQ8TCU5 1115 aa10.7□□□□□ -0.7
SDCBP-208ENST00000520228 COPRSQ9NQ92 184 aa10.7□□□□□ -0.7
SDCBP-208ENST00000520228 GGT7Q9UJ14 662 aa10.7□□□□□ -0.7
SDCBP-208ENST00000520228 MEGF11A6BM72 1044 aa10.69□□□□□ -0.7
SDCBP-208ENST00000520228 F8W735 103 aaPredicted RBP10.69□□□□□ -0.7
SDCBP-208ENST00000520228 SCARA3Q6AZY7 606 aa10.69□□□□□ -0.7
SDCBP-208ENST00000520228 RHOVQ96L33 236 aa10.69□□□□□ -0.7
SDCBP-208ENST00000520228 TMEM74Q96NL1 305 aa10.69□□□□□ -0.7
SDCBP-208ENST00000520228 NACC1Q96RE7 527 aa10.69□□□□□ -0.7
SDCBP-208ENST00000520228 TMPRSS13Q9BYE2 586 aa10.69□□□□□ -0.7
SDCBP-208ENST00000520228 CCDC86Q9H6F5 360 aaKnown RBP10.69□□□□□ -0.7
SDCBP-208ENST00000520228 KRT82Q9NSB4 513 aa10.69□□□□□ -0.7
SDCBP-208ENST00000520228 GLI2P10070 1586 aa10.69□□□□□ -0.7
SDCBP-208ENST00000520228 C9orf172C9J069 976 aa10.68□□□□□ -0.7
SDCBP-208ENST00000520228 RASSF7Q02833 373 aa10.68□□□□□ -0.7
SDCBP-208ENST00000520228 ADGRE1Q14246 886 aa10.68□□□□□ -0.7
SDCBP-208ENST00000520228 LRRC14Q15048 493 aa10.68□□□□□ -0.7
SDCBP-208ENST00000520228 KBTBD4Q9NVX7 518 aa10.68□□□□□ -0.7
SDCBP-208ENST00000520228 CDK11AQ9UQ88 783 aaPredicted RBP10.68□□□□□ -0.7
SDCBP-208ENST00000520228 TLR6Q9Y2C9 796 aa10.68□□□□□ -0.7
SDCBP-208ENST00000520228 CD109Q6YHK3 1445 aa10.67□□□□□ -0.7
SDCBP-208ENST00000520228 APBA3O96018 575 aa10.67□□□□□ -0.7
SDCBP-208ENST00000520228 TFE3P19532 575 aaPredicted RBP10.67□□□□□ -0.7
SDCBP-208ENST00000520228 NRG1Q02297 640 aaPredicted RBP10.67□□□□□ -0.7
SDCBP-208ENST00000520228 PWP1Q13610 501 aa10.67□□□□□ -0.7
SDCBP-208ENST00000520228 C9orf131Q5VYM1 1079 aa10.67□□□□□ -0.7
SDCBP-208ENST00000520228 LLGL2Q6P1M3 1020 aa10.67□□□□□ -0.7
SDCBP-208ENST00000520228 MPRIPQ6WCQ1 1025 aa10.67□□□□□ -0.7
SDCBP-208ENST00000520228 ACAD11Q709F0 780 aa10.67□□□□□ -0.7
SDCBP-208ENST00000520228 CEP162Q5TB80 1403 aa10.67□□□□□ -0.7
SDCBP-208ENST00000520228 SYNGAP1Q96PV0 1343 aa10.66□□□□□ -0.7
SDCBP-208ENST00000520228 ZNF862O60290 1169 aa10.66□□□□□ -0.7
SDCBP-208ENST00000520228 TRIM37O94972 964 aa10.66□□□□□ -0.7
SDCBP-208ENST00000520228 RAD51AP2Q09MP3 1159 aa10.66□□□□□ -0.7
SDCBP-208ENST00000520228 EXOSC6Q5RKV6 272 aaKnown RBP10.66□□□□□ -0.7
SDCBP-208ENST00000520228 Q6ZS46 218 aa10.66□□□□□ -0.7
SDCBP-208ENST00000520228 RELL1Q8IUW5 271 aa10.66□□□□□ -0.7
SDCBP-208ENST00000520228 GAL3ST3Q96A11 431 aa10.66□□□□□ -0.7
SDCBP-208ENST00000520228 RUSC1Q9BVN2 902 aa10.66□□□□□ -0.7
SDCBP-208ENST00000520228 ZC3H12CQ9C0D7 883 aaKnown RBP10.66□□□□□ -0.7
SDCBP-208ENST00000520228 CBX8Q9HC52 389 aa10.66□□□□□ -0.7
SDCBP-208ENST00000520228 DDX41Q9UJV9 622 aaKnown RBP10.66□□□□□ -0.7
SDCBP-208ENST00000520228 PCDHB5Q9Y5E4 795 aa10.66□□□□□ -0.7
SDCBP-208ENST00000520228 KIF13AQ9H1H9 1805 aa10.65□□□□□ -0.7
SDCBP-208ENST00000520228 F6X3S4 739 aa10.65□□□□□ -0.7
SDCBP-208ENST00000520228 CHRNA4P43681 627 aa10.65□□□□□ -0.7
SDCBP-208ENST00000520228 MBTPS1Q14703 1052 aa10.65□□□□□ -0.7
SDCBP-208ENST00000520228 MAP1SQ66K74 1059 aaPredicted RBP10.65□□□□□ -0.7
SDCBP-208ENST00000520228 NT5DC4Q86YG4 428 aa10.65□□□□□ -0.7
SDCBP-208ENST00000520228 KCNB2Q92953 911 aa10.65□□□□□ -0.7
SDCBP-208ENST00000520228 WDR89Q96FK6 387 aaPredicted RBP10.65□□□□□ -0.7
SDCBP-208ENST00000520228 RNF208Q9H0X6 261 aa10.65□□□□□ -0.7
SDCBP-208ENST00000520228 AKTIPQ9H8T0 292 aa10.65□□□□□ -0.7
SDCBP-208ENST00000520228 SUGCTQ9HAC7 445 aa10.65□□□□□ -0.7
SDCBP-208ENST00000520228 KCNQ5Q9NR82 932 aa10.65□□□□□ -0.7
SDCBP-208ENST00000520228 USP21Q9UK80 565 aa10.65□□□□□ -0.7
SDCBP-208ENST00000520228 CASKIN1Q8WXD9 1431 aa10.65□□□□□ -0.7
SDCBP-208ENST00000520228 GARTP22102 1010 aa10.64□□□□□ -0.71
SDCBP-208ENST00000520228 GBP2P32456 591 aaPredicted RBP10.64□□□□□ -0.71
SDCBP-208ENST00000520228 RACK1P63244 317 aaKnown RBP10.64□□□□□ -0.71
SDCBP-208ENST00000520228 LMNB2Q03252 620 aa10.64□□□□□ -0.71
SDCBP-208ENST00000520228 KIF4BQ2VIQ3 1234 aa10.64□□□□□ -0.71
SDCBP-208ENST00000520228 ZNF394Q53GI3 561 aa10.64□□□□□ -0.71
SDCBP-208ENST00000520228 HP1BP3Q5SSJ5 553 aaPredicted RBP10.64□□□□□ -0.71
SDCBP-208ENST00000520228 CD163Q86VB7 1156 aa10.64□□□□□ -0.71
SDCBP-208ENST00000520228 TRIM42Q8IWZ5 723 aa10.64□□□□□ -0.71
SDCBP-208ENST00000520228 AGGF1Q8N302 714 aaeCLIP10.64□□□□□ -0.71
SDCBP-208ENST00000520228 CDK13Q14004 1512 aaKnown RBP10.63□□□□□ -0.71
SDCBP-208ENST00000520228 TEX14Q8IWB6 1497 aa10.63□□□□□ -0.71
SDCBP-208ENST00000520228 ALX3O95076 343 aa10.63□□□□□ -0.71
SDCBP-208ENST00000520228 PF4P02776 101 aa10.63□□□□□ -0.71
SDCBP-208ENST00000520228 NOS3P29474 1203 aa10.63□□□□□ -0.71
SDCBP-208ENST00000520228 PTPN11Q06124 597 aaPredicted RBP10.63□□□□□ -0.71
SDCBP-208ENST00000520228 USP48Q86UV5 1035 aa10.63□□□□□ -0.71
SDCBP-208ENST00000520228 SMG8Q8ND04 991 aaKnown RBP10.63□□□□□ -0.71
SDCBP-208ENST00000520228 GPBAR1Q8TDU6 330 aa10.63□□□□□ -0.71
SDCBP-208ENST00000520228 WFDC12Q8WWY7 111 aa10.63□□□□□ -0.71
SDCBP-208ENST00000520228 WDR18Q9BV38 432 aa10.63□□□□□ -0.71
SDCBP-208ENST00000520228 PCDHGC5Q9Y5F6 944 aa10.63□□□□□ -0.71
SDCBP-208ENST00000520228 C1QTNF9BB2RNN3 333 aa10.62□□□□□ -0.71
SDCBP-208ENST00000520228 AOC2O75106 756 aa10.62□□□□□ -0.71
SDCBP-208ENST00000520228 ITGB2P05107 769 aa10.62□□□□□ -0.71
SDCBP-208ENST00000520228 LIG1P18858 919 aa10.62□□□□□ -0.71
SDCBP-208ENST00000520228 CAMK2GQ13555 558 aaPredicted RBP10.62□□□□□ -0.71
SDCBP-208ENST00000520228 PDE3AQ14432 1141 aa10.62□□□□□ -0.71
SDCBP-208ENST00000520228 CCDC84Q86UT8 332 aaPredicted RBP10.62□□□□□ -0.71
SDCBP-208ENST00000520228 PCDHGB7Q9Y5F8 929 aa10.62□□□□□ -0.71
SDCBP-208ENST00000520228 HECW1Q76N89 1606 aa10.62□□□□□ -0.71
SDCBP-208ENST00000520228 MINDY4BA8MYZ0 360 aa10.61□□□□□ -0.71
SDCBP-208ENST00000520228 TIAF1O95411 115 aa10.61□□□□□ -0.71
SDCBP-208ENST00000520228 ADAMTS1Q9UHI8 967 aa10.61□□□□□ -0.71
SDCBP-208ENST00000520228 MAGI3Q5TCQ9 1506 aa10.61□□□□□ -0.71
SDCBP-208ENST00000520228 EIF4A3P38919 411 aaKnown RBP10.6□□□□□ -0.71
SDCBP-208ENST00000520228 IREB2P48200 963 aaKnown RBP10.6□□□□□ -0.71
SDCBP-208ENST00000520228 NUTM2GQ5VZR2 741 aa10.6□□□□□ -0.71
SDCBP-208ENST00000520228 MIR1-1HGQ9H1L0 117 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms