RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 ZKSCAN4Q969J2 545 aaPredicted RBP36.38■■■■□ 3.41
SYNPO-203ENST00000518872 PTPN18Q99952 460 aa36.38■■■■□ 3.41
SYNPO-203ENST00000518872 TLR7Q9NYK1 1049 aaKnown RBP36.38■■■■□ 3.41
SYNPO-203ENST00000518872 MAP3K10Q02779 954 aa36.37■■■■□ 3.41
SYNPO-203ENST00000518872 SIRT2Q8IXJ6 389 aa36.37■■■■□ 3.41
SYNPO-203ENST00000518872 OTUD5Q96G74 571 aa36.37■■■■□ 3.41
SYNPO-203ENST00000518872 CCDC8Q9H0W5 538 aaPredicted RBP36.37■■■■□ 3.41
SYNPO-203ENST00000518872 CYP2E1P05181 493 aaPredicted RBP36.36■■■■□ 3.41
SYNPO-203ENST00000518872 NOL9Q5SY16 702 aaKnown RBP36.36■■■■□ 3.41
SYNPO-203ENST00000518872 R3HDMLQ9H3Y0 253 aa36.36■■■■□ 3.41
SYNPO-203ENST00000518872 DDX4Q9NQI0 724 aaKnown RBP36.36■■■■□ 3.41
SYNPO-203ENST00000518872 SNRKQ9NRH2 765 aa36.36■■■■□ 3.41
SYNPO-203ENST00000518872 COL2A1P02458 1487 aaPredicted RBP36.36■■■■□ 3.41
SYNPO-203ENST00000518872 PPIL2Q13356 520 aa36.35■■■■□ 3.41
SYNPO-203ENST00000518872 RHPN1Q8TCX5 695 aa36.35■■■■□ 3.41
SYNPO-203ENST00000518872 INPP5BP32019 993 aa36.34■■■■□ 3.41
SYNPO-203ENST00000518872 PPATQ06203 517 aa36.34■■■■□ 3.41
SYNPO-203ENST00000518872 SH3BP5LQ7L8J4 393 aa36.34■■■■□ 3.41
SYNPO-203ENST00000518872 BRI3BPQ8WY22 251 aa36.34■■■■□ 3.41
SYNPO-203ENST00000518872 FKTNO75072 461 aa36.33■■■■□ 3.41
SYNPO-203ENST00000518872 KIF1BPQ96EK5 621 aa36.33■■■■□ 3.41
SYNPO-203ENST00000518872 ZAP70P43403 619 aa36.32■■■■□ 3.4
SYNPO-203ENST00000518872 C20orf194Q5TEA3 1177 aa36.32■■■■□ 3.4
SYNPO-203ENST00000518872 AACSQ86V21 672 aa36.32■■■■□ 3.4
SYNPO-203ENST00000518872 CCL15-CCL14A0A0B4J2E2 113 aa36.31■■■■□ 3.4
SYNPO-203ENST00000518872 PKN2Q16513 984 aaKnown RBP36.31■■■■□ 3.4
SYNPO-203ENST00000518872 CCL15Q16663 113 aa36.31■■■■□ 3.4
SYNPO-203ENST00000518872 NAA16Q6N069 864 aaPredicted RBP36.31■■■■□ 3.4
SYNPO-203ENST00000518872 CDK5RAP2Q96SN8 1893 aa36.31■■■■□ 3.4
SYNPO-203ENST00000518872 FOCADQ5VW36 1801 aa36.3■■■■□ 3.4
SYNPO-203ENST00000518872 DDTLA6NHG4 134 aaPredicted RBP36.3■■■■□ 3.4
SYNPO-203ENST00000518872 IRF6O14896 467 aa36.3■■■■□ 3.4
SYNPO-203ENST00000518872 PPP4CP60510 307 aa36.3■■■■□ 3.4
SYNPO-203ENST00000518872 ZCCHC17Q9NP64 241 aaKnown RBP36.3■■■■□ 3.4
SYNPO-203ENST00000518872 PHF20L1A8MW92 1017 aa36.29■■■■□ 3.4
SYNPO-203ENST00000518872 RAB11FIP3O75154 756 aa36.29■■■■□ 3.4
SYNPO-203ENST00000518872 CETPP11597 493 aa36.29■■■■□ 3.4
SYNPO-203ENST00000518872 SNAPC2Q13487 334 aa36.29■■■■□ 3.4
SYNPO-203ENST00000518872 PICALMQ13492 652 aa36.29■■■■□ 3.4
SYNPO-203ENST00000518872 ZSCAN29Q8IWY8 852 aaPredicted RBP36.29■■■■□ 3.4
SYNPO-203ENST00000518872 PLCG2P16885 1265 aa36.28■■■■□ 3.4
SYNPO-203ENST00000518872 CRHR2Q13324 411 aa36.28■■■■□ 3.4
SYNPO-203ENST00000518872 TMED8Q6PL24 325 aaPredicted RBP36.28■■■■□ 3.4
SYNPO-203ENST00000518872 CLASRPQ8N2M8 674 aaKnown RBP36.28■■■■□ 3.4
SYNPO-203ENST00000518872 TBC1D12O60347 775 aa36.27■■■■□ 3.4
SYNPO-203ENST00000518872 BAG3O95817 575 aa36.27■■■■□ 3.4
SYNPO-203ENST00000518872 NOL10Q9BSC4 688 aaKnown RBP36.27■■■■□ 3.4
SYNPO-203ENST00000518872 IL1RAPL2Q9NP60 686 aa36.27■■■■□ 3.4
SYNPO-203ENST00000518872 PIH1D3Q9NQM4 214 aaKnown RBP36.27■■■■□ 3.4
SYNPO-203ENST00000518872 KCNH4Q9UQ05 1017 aa36.27■■■■□ 3.4
SYNPO-203ENST00000518872 DOCK1Q14185 1865 aa36.26■■■■□ 3.4
SYNPO-203ENST00000518872 OSBPL5Q9H0X9 879 aaPredicted RBP36.25■■■■□ 3.39
SYNPO-203ENST00000518872 TEX11Q8IYF3 940 aa36.24■■■■□ 3.39
SYNPO-203ENST00000518872 FAM43AQ8N2R8 423 aa36.24■■■■□ 3.39
SYNPO-203ENST00000518872 CCDC85CA6NKD9 419 aa36.23■■■■□ 3.39
SYNPO-203ENST00000518872 ADGRA1Q86SQ6 560 aa36.23■■■■□ 3.39
SYNPO-203ENST00000518872 SCYL3Q8IZE3 742 aa36.23■■■■□ 3.39
SYNPO-203ENST00000518872 PPIL4Q8WUA2 492 aaKnown RBP eCLIP36.23■■■■□ 3.39
SYNPO-203ENST00000518872 AATFQ9NY61 560 aaKnown RBP eCLIP36.23■■■■□ 3.39
SYNPO-203ENST00000518872 SH3RF3Q8TEJ3 882 aaPredicted RBP36.22■■■■□ 3.39
SYNPO-203ENST00000518872 CTNND1O60716 968 aaKnown RBP36.21■■■■□ 3.39
SYNPO-203ENST00000518872 TAF1CQ15572 869 aaPredicted RBP36.21■■■■□ 3.39
SYNPO-203ENST00000518872 CERS3Q8IU89 383 aa36.21■■■■□ 3.39
SYNPO-203ENST00000518872 PHIPQ8WWQ0 1821 aa36.21■■■■□ 3.39
SYNPO-203ENST00000518872 ZFYVE28Q9HCC9 887 aa36.21■■■■□ 3.39
SYNPO-203ENST00000518872 PTPRFP10586 1907 aa36.2■■■■□ 3.39
SYNPO-203ENST00000518872 BTBD19C9JJ37 291 aa36.19■■■■□ 3.38
SYNPO-203ENST00000518872 ERO1AQ96HE7 468 aa36.19■■■■□ 3.38
SYNPO-203ENST00000518872 DHX36Q9H2U1 1008 aaKnown RBP36.19■■■■□ 3.38
SYNPO-203ENST00000518872 SIPA1L1O43166 1804 aa36.19■■■■□ 3.38
SYNPO-203ENST00000518872 CXCL11O14625 94 aa36.18■■■■□ 3.38
SYNPO-203ENST00000518872 IDH1O75874 414 aaKnown RBP36.18■■■■□ 3.38
SYNPO-203ENST00000518872 FBXO46Q6PJ61 603 aaPredicted RBP36.18■■■■□ 3.38
SYNPO-203ENST00000518872 PICK1Q9NRD5 415 aa36.18■■■■□ 3.38
SYNPO-203ENST00000518872 IFIT2P09913 472 aaKnown RBP36.17■■■■□ 3.38
SYNPO-203ENST00000518872 PTPRAP18433 802 aa36.17■■■■□ 3.38
SYNPO-203ENST00000518872 SP3Q02447 781 aa36.17■■■■□ 3.38
SYNPO-203ENST00000518872 MAP3K12Q12852 859 aa36.17■■■■□ 3.38
SYNPO-203ENST00000518872 TTF1Q15361 905 aaPredicted RBP36.17■■■■□ 3.38
SYNPO-203ENST00000518872 ANTXR1Q9H6X2 564 aa36.17■■■■□ 3.38
SYNPO-203ENST00000518872 APBB1O00213 710 aa36.16■■■■□ 3.38
SYNPO-203ENST00000518872 CYP7A1P22680 504 aa36.16■■■■□ 3.38
SYNPO-203ENST00000518872 RGS19P49795 217 aa36.16■■■■□ 3.38
SYNPO-203ENST00000518872 ANKRD23Q86SG2 305 aa36.16■■■■□ 3.38
SYNPO-203ENST00000518872 HERC5Q9UII4 1024 aaKnown RBP36.16■■■■□ 3.38
SYNPO-203ENST00000518872 NDUFB9Q9Y6M9 179 aa36.16■■■■□ 3.38
SYNPO-203ENST00000518872 ATAD5Q96QE3 1844 aa36.15■■■■□ 3.38
SYNPO-203ENST00000518872 SLURP2P0DP57 97 aa36.15■■■■□ 3.38
SYNPO-203ENST00000518872 MOGSQ13724 837 aa36.15■■■■□ 3.38
SYNPO-203ENST00000518872 XPO5Q9HAV4 1204 aaKnown RBP eCLIP36.15■■■■□ 3.38
SYNPO-203ENST00000518872 PI4KBQ9UBF8 816 aa36.15■■■■□ 3.38
SYNPO-203ENST00000518872 HPS5Q9UPZ3 1129 aa36.15■■■■□ 3.38
SYNPO-203ENST00000518872 FLT1P17948 1338 aa36.14■■■■□ 3.38
SYNPO-203ENST00000518872 TLR2O60603 784 aa36.14■■■■□ 3.38
SYNPO-203ENST00000518872 OTOP1Q7RTM1 612 aa36.13■■■■□ 3.37
SYNPO-203ENST00000518872 MAGEB6Q8N7X4 407 aa36.13■■■■□ 3.37
SYNPO-203ENST00000518872 TGFBRAP1Q8WUH2 860 aa36.13■■■■□ 3.37
SYNPO-203ENST00000518872 AFG3L2Q9Y4W6 797 aa36.13■■■■□ 3.37
SYNPO-203ENST00000518872 ZHX2Q9Y6X8 837 aa36.13■■■■□ 3.37
SYNPO-203ENST00000518872 METTL16Q86W50 562 aaKnown RBP36.12■■■■□ 3.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms