RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 ZFPM1Q8IX07 1006 aa21.49■■□□□ 1.03
DDX41-217ENST00000515562 CD99L2Q8TCZ2 262 aa21.49■■□□□ 1.03
DDX41-217ENST00000515562 NSUN4Q96CB9 384 aaKnown RBP21.49■■□□□ 1.03
DDX41-217ENST00000515562 NOP58Q9Y2X3 529 aaKnown RBP21.49■■□□□ 1.03
DDX41-217ENST00000515562 MS4A1P11836 297 aa21.48■■□□□ 1.03
DDX41-217ENST00000515562 CCDC158Q5M9N0 1113 aa21.48■■□□□ 1.03
DDX41-217ENST00000515562 TTC39AQ5SRH9 613 aa21.48■■□□□ 1.03
DDX41-217ENST00000515562 ZNF384Q8TF68 577 aa21.48■■□□□ 1.03
DDX41-217ENST00000515562 RAI14Q9P0K7 980 aa21.48■■□□□ 1.03
DDX41-217ENST00000515562 BTBD19C9JJ37 291 aa21.47■■□□□ 1.03
DDX41-217ENST00000515562 NPM3O75607 178 aaKnown RBP21.47■■□□□ 1.03
DDX41-217ENST00000515562 PICALMQ13492 652 aa21.47■■□□□ 1.03
DDX41-217ENST00000515562 TBC1D9Q6ZT07 1266 aa21.47■■□□□ 1.03
DDX41-217ENST00000515562 EFCC1Q9HA90 598 aa21.47■■□□□ 1.03
DDX41-217ENST00000515562 LRP2BPQ9P2M1 347 aa21.47■■□□□ 1.03
DDX41-217ENST00000515562 KCNH4Q9UQ05 1017 aa21.47■■□□□ 1.03
DDX41-217ENST00000515562 COL2A1P02458 1487 aaPredicted RBP21.46■■□□□ 1.03
DDX41-217ENST00000515562 RHBDL3P58872 404 aa21.46■■□□□ 1.03
DDX41-217ENST00000515562 ARHGEF6Q15052 776 aa21.46■■□□□ 1.03
DDX41-217ENST00000515562 CEP85Q6P2H3 762 aa21.46■■□□□ 1.03
DDX41-217ENST00000515562 SH3BP5LQ7L8J4 393 aa21.46■■□□□ 1.03
DDX41-217ENST00000515562 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.46■■□□□ 1.03
DDX41-217ENST00000515562 DBNDD2Q9BQY9 259 aa21.46■■□□□ 1.03
DDX41-217ENST00000515562 DDX4Q9NQI0 724 aaKnown RBP21.46■■□□□ 1.03
DDX41-217ENST00000515562 TLR2O60603 784 aa21.45■■□□□ 1.02
DDX41-217ENST00000515562 MAP3K10Q02779 954 aa21.45■■□□□ 1.02
DDX41-217ENST00000515562 SCYL3Q8IZE3 742 aa21.45■■□□□ 1.02
DDX41-217ENST00000515562 PANK1Q8TE04 598 aa21.45■■□□□ 1.02
DDX41-217ENST00000515562 ZNF512BQ96KM6 892 aaPredicted RBP21.45■■□□□ 1.02
DDX41-217ENST00000515562 NOL10Q9BSC4 688 aaKnown RBP21.45■■□□□ 1.02
DDX41-217ENST00000515562 PICK1Q9NRD5 415 aa21.45■■□□□ 1.02
DDX41-217ENST00000515562 DOCK1Q14185 1865 aa21.45■■□□□ 1.02
DDX41-217ENST00000515562 DDTLA6NHG4 134 aaPredicted RBP21.44■■□□□ 1.02
DDX41-217ENST00000515562 PHF20L1A8MW92 1017 aa21.44■■□□□ 1.02
DDX41-217ENST00000515562 IGSF3O75054 1194 aa21.44■■□□□ 1.02
DDX41-217ENST00000515562 ANKRD23Q86SG2 305 aa21.44■■□□□ 1.02
DDX41-217ENST00000515562 PTPN22Q9Y2R2 807 aa21.44■■□□□ 1.02
DDX41-217ENST00000515562 ERC1Q8IUD2 1116 aa21.43■■□□□ 1.02
DDX41-217ENST00000515562 DBNLQ9UJU6 430 aaKnown RBP21.43■■□□□ 1.02
DDX41-217ENST00000515562 HTTP42858 3142 aa21.42■■□□□ 1.02
DDX41-217ENST00000515562 CXCL11O14625 94 aa21.42■■□□□ 1.02
DDX41-217ENST00000515562 NAA16Q6N069 864 aaPredicted RBP21.42■■□□□ 1.02
DDX41-217ENST00000515562 SNRKQ9NRH2 765 aa21.42■■□□□ 1.02
DDX41-217ENST00000515562 CTNND1O60716 968 aaKnown RBP21.41■■□□□ 1.02
DDX41-217ENST00000515562 BAG3O95817 575 aa21.41■■□□□ 1.02
DDX41-217ENST00000515562 PLCG2P16885 1265 aa21.41■■□□□ 1.02
DDX41-217ENST00000515562 PTPRAP18433 802 aa21.41■■□□□ 1.02
DDX41-217ENST00000515562 KIF22Q14807 665 aa21.41■■□□□ 1.02
DDX41-217ENST00000515562 TEX11Q8IYF3 940 aa21.41■■□□□ 1.02
DDX41-217ENST00000515562 OSBPL5Q9H0X9 879 aaPredicted RBP21.41■■□□□ 1.02
DDX41-217ENST00000515562 PDHXO00330 501 aa21.4■■□□□ 1.02
DDX41-217ENST00000515562 TBC1D12O60347 775 aa21.4■■□□□ 1.02
DDX41-217ENST00000515562 CYP2E1P05181 493 aaPredicted RBP21.4■■□□□ 1.02
DDX41-217ENST00000515562 HSP90AB4PQ58FF6 505 aa21.4■■□□□ 1.02
DDX41-217ENST00000515562 ZHX2Q9Y6X8 837 aa21.4■■□□□ 1.02
DDX41-217ENST00000515562 LACTBP83111 547 aaPredicted RBP21.39■■□□□ 1.01
DDX41-217ENST00000515562 CAP1Q01518 475 aa21.39■■□□□ 1.01
DDX41-217ENST00000515562 MOGSQ13724 837 aa21.39■■□□□ 1.01
DDX41-217ENST00000515562 EAF2Q96CJ1 260 aaPredicted RBP21.39■■□□□ 1.01
DDX41-217ENST00000515562 PARK7Q99497 189 aaKnown RBP21.39■■□□□ 1.01
DDX41-217ENST00000515562 TLR7Q9NYK1 1049 aaKnown RBP21.39■■□□□ 1.01
DDX41-217ENST00000515562 DDX19BQ9UMR2 479 aa21.39■■□□□ 1.01
DDX41-217ENST00000515562 EXOC6BQ9Y2D4 811 aa21.39■■□□□ 1.01
DDX41-217ENST00000515562 RBBP6Q7Z6E9 1792 aaKnown RBP21.38■■□□□ 1.01
DDX41-217ENST00000515562 A0A0G2JLL6 359 aaPredicted RBP21.38■■□□□ 1.01
DDX41-217ENST00000515562 GNRH1P01148 92 aa21.38■■□□□ 1.01
DDX41-217ENST00000515562 ZAP70P43403 619 aa21.38■■□□□ 1.01
DDX41-217ENST00000515562 FASTKD5Q7L8L6 764 aaKnown RBP21.38■■□□□ 1.01
DDX41-217ENST00000515562 PRRT2Q7Z6L0 340 aaPredicted RBP21.38■■□□□ 1.01
DDX41-217ENST00000515562 SH3RF3Q8TEJ3 882 aaPredicted RBP21.38■■□□□ 1.01
DDX41-217ENST00000515562 ARMC5Q96C12 935 aa21.38■■□□□ 1.01
DDX41-217ENST00000515562 CCDC8Q9H0W5 538 aaPredicted RBP21.38■■□□□ 1.01
DDX41-217ENST00000515562 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.38■■□□□ 1.01
DDX41-217ENST00000515562 AATFQ9NY61 560 aaKnown RBP eCLIP21.38■■□□□ 1.01
DDX41-217ENST00000515562 FOCADQ5VW36 1801 aa21.38■■□□□ 1.01
DDX41-217ENST00000515562 PHIPQ8WWQ0 1821 aa21.38■■□□□ 1.01
DDX41-217ENST00000515562 PTPRFP10586 1907 aa21.37■■□□□ 1.01
DDX41-217ENST00000515562 ADGRA2Q96PE1 1338 aa21.37■■□□□ 1.01
DDX41-217ENST00000515562 C17orf99Q6UX52 265 aa21.37■■□□□ 1.01
DDX41-217ENST00000515562 CHMP4BQ9H444 224 aaKnown RBP21.37■■□□□ 1.01
DDX41-217ENST00000515562 HERC5Q9UII4 1024 aaKnown RBP21.37■■□□□ 1.01
DDX41-217ENST00000515562 RCAN3Q9UKA8 241 aa21.37■■□□□ 1.01
DDX41-217ENST00000515562 AFG3L2Q9Y4W6 797 aa21.37■■□□□ 1.01
DDX41-217ENST00000515562 MYO5AQ9Y4I1 1855 aaKnown RBP21.37■■□□□ 1.01
DDX41-217ENST00000515562 TNRC18O15417 2968 aaPredicted RBP21.36■■□□□ 1.01
DDX41-217ENST00000515562 HMMRO75330 724 aa21.36■■□□□ 1.01
DDX41-217ENST00000515562 PPP4CP60510 307 aa21.36■■□□□ 1.01
DDX41-217ENST00000515562 AACSQ86V21 672 aa21.36■■□□□ 1.01
DDX41-217ENST00000515562 RPAP2Q8IXW5 612 aaPredicted RBP21.36■■□□□ 1.01
DDX41-217ENST00000515562 DHX36Q9H2U1 1008 aaKnown RBP21.36■■□□□ 1.01
DDX41-217ENST00000515562 PIH1D3Q9NQM4 214 aaKnown RBP21.36■■□□□ 1.01
DDX41-217ENST00000515562 CDK5RAP2Q96SN8 1893 aa21.36■■□□□ 1.01
DDX41-217ENST00000515562 ZSWIM8A7E2V4 1837 aa21.35■■□□□ 1.01
DDX41-217ENST00000515562 ATAD5Q96QE3 1844 aa21.35■■□□□ 1.01
DDX41-217ENST00000515562 PRMT2P55345 433 aa21.35■■□□□ 1.01
DDX41-217ENST00000515562 SLC9C1Q4G0N8 1177 aa21.35■■□□□ 1.01
DDX41-217ENST00000515562 TMED8Q6PL24 325 aaPredicted RBP21.35■■□□□ 1.01
DDX41-217ENST00000515562 CERS3Q8IU89 383 aa21.35■■□□□ 1.01
DDX41-217ENST00000515562 CPA4Q9UI42 421 aa21.35■■□□□ 1.01
DDX41-217ENST00000515562 SLC45A1Q9Y2W3 748 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms