RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 DBNDD2Q9BQY9 259 aa16.76■□□□□ 0.27
TCOF1-215ENST00000515516 PICK1Q9NRD5 415 aa16.76■□□□□ 0.27
TCOF1-215ENST00000515516 SOX10P56693 466 aa16.75■□□□□ 0.27
TCOF1-215ENST00000515516 NOL9Q5SY16 702 aaKnown RBP16.75■□□□□ 0.27
TCOF1-215ENST00000515516 CEP85Q6P2H3 762 aa16.75■□□□□ 0.27
TCOF1-215ENST00000515516 FAM43AQ8N2R8 423 aa16.75■□□□□ 0.27
TCOF1-215ENST00000515516 CD99L2Q8TCZ2 262 aa16.75■□□□□ 0.27
TCOF1-215ENST00000515516 CHMP4BQ9H444 224 aaKnown RBP16.75■□□□□ 0.27
TCOF1-215ENST00000515516 ZCCHC17Q9NP64 241 aaKnown RBP16.75■□□□□ 0.27
TCOF1-215ENST00000515516 SNRKQ9NRH2 765 aa16.75■□□□□ 0.27
TCOF1-215ENST00000515516 BAG3O95817 575 aa16.74■□□□□ 0.27
TCOF1-215ENST00000515516 HSP90AB4PQ58FF6 505 aa16.74■□□□□ 0.27
TCOF1-215ENST00000515516 NAA16Q6N069 864 aaPredicted RBP16.74■□□□□ 0.27
TCOF1-215ENST00000515516 OTOP1Q7RTM1 612 aa16.74■□□□□ 0.27
TCOF1-215ENST00000515516 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.74■□□□□ 0.27
TCOF1-215ENST00000515516 EFCC1Q9HA90 598 aa16.74■□□□□ 0.27
TCOF1-215ENST00000515516 BTBD19C9JJ37 291 aa16.73■□□□□ 0.27
TCOF1-215ENST00000515516 NPM3O75607 178 aaKnown RBP16.73■□□□□ 0.27
TCOF1-215ENST00000515516 RHBDL3P58872 404 aa16.73■□□□□ 0.27
TCOF1-215ENST00000515516 KIF22Q14807 665 aa16.73■□□□□ 0.27
TCOF1-215ENST00000515516 TEX11Q8IYF3 940 aa16.73■□□□□ 0.27
TCOF1-215ENST00000515516 SCYL3Q8IZE3 742 aa16.73■□□□□ 0.27
TCOF1-215ENST00000515516 ZNF512BQ96KM6 892 aaPredicted RBP16.73■□□□□ 0.27
TCOF1-215ENST00000515516 CCDC8Q9H0W5 538 aaPredicted RBP16.73■□□□□ 0.27
TCOF1-215ENST00000515516 DDX4Q9NQI0 724 aaKnown RBP16.73■□□□□ 0.27
TCOF1-215ENST00000515516 DDX19BQ9UMR2 479 aa16.73■□□□□ 0.27
TCOF1-215ENST00000515516 DDTLA6NHG4 134 aaPredicted RBP16.72■□□□□ 0.27
TCOF1-215ENST00000515516 IGSF3O75054 1194 aa16.72■□□□□ 0.27
TCOF1-215ENST00000515516 HMMRO75330 724 aa16.72■□□□□ 0.27
TCOF1-215ENST00000515516 PLCG2P16885 1265 aa16.72■□□□□ 0.27
TCOF1-215ENST00000515516 SH3BP5LQ7L8J4 393 aa16.72■□□□□ 0.27
TCOF1-215ENST00000515516 ZNF384Q8TF68 577 aa16.72■□□□□ 0.27
TCOF1-215ENST00000515516 RCAN3Q9UKA8 241 aa16.72■□□□□ 0.27
TCOF1-215ENST00000515516 MYH13Q9UKX3 1938 aa16.72■□□□□ 0.27
TCOF1-215ENST00000515516 PHF20L1A8MW92 1017 aa16.71■□□□□ 0.27
TCOF1-215ENST00000515516 CXCL11O14625 94 aa16.71■□□□□ 0.27
TCOF1-215ENST00000515516 TLR2O60603 784 aa16.71■□□□□ 0.27
TCOF1-215ENST00000515516 CTNND1O60716 968 aaKnown RBP16.71■□□□□ 0.27
TCOF1-215ENST00000515516 ANKRD23Q86SG2 305 aa16.71■□□□□ 0.27
TCOF1-215ENST00000515516 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.71■□□□□ 0.27
TCOF1-215ENST00000515516 DBNLQ9UJU6 430 aaKnown RBP16.71■□□□□ 0.27
TCOF1-215ENST00000515516 KCNH4Q9UQ05 1017 aa16.71■□□□□ 0.27
TCOF1-215ENST00000515516 EXOC6BQ9Y2D4 811 aa16.71■□□□□ 0.27
TCOF1-215ENST00000515516 PTPN22Q9Y2R2 807 aa16.71■□□□□ 0.27
TCOF1-215ENST00000515516 COG6Q9Y2V7 657 aa16.71■□□□□ 0.27
TCOF1-215ENST00000515516 ZHX2Q9Y6X8 837 aa16.71■□□□□ 0.27
TCOF1-215ENST00000515516 RFX7Q2KHR2 1363 aa16.7■□□□□ 0.26
TCOF1-215ENST00000515516 PDHXO00330 501 aa16.7■□□□□ 0.26
TCOF1-215ENST00000515516 CYP2E1P05181 493 aaPredicted RBP16.7■□□□□ 0.26
TCOF1-215ENST00000515516 ZAP70P43403 619 aa16.7■□□□□ 0.26
TCOF1-215ENST00000515516 MAP3K10Q02779 954 aa16.7■□□□□ 0.26
TCOF1-215ENST00000515516 AACSQ86V21 672 aa16.7■□□□□ 0.26
TCOF1-215ENST00000515516 RPAP2Q8IXW5 612 aaPredicted RBP16.7■□□□□ 0.26
TCOF1-215ENST00000515516 EAF2Q96CJ1 260 aaPredicted RBP16.7■□□□□ 0.26
TCOF1-215ENST00000515516 ATRNL1Q5VV63 1379 aa16.69■□□□□ 0.26
TCOF1-215ENST00000515516 TBC1D12O60347 775 aa16.69■□□□□ 0.26
TCOF1-215ENST00000515516 PTPRAP18433 802 aa16.69■□□□□ 0.26
TCOF1-215ENST00000515516 FASTKD5Q7L8L6 764 aaKnown RBP16.69■□□□□ 0.26
TCOF1-215ENST00000515516 SH3RF3Q8TEJ3 882 aaPredicted RBP16.69■□□□□ 0.26
TCOF1-215ENST00000515516 OSBPL5Q9H0X9 879 aaPredicted RBP16.69■□□□□ 0.26
TCOF1-215ENST00000515516 AATFQ9NY61 560 aaKnown RBP eCLIP16.69■□□□□ 0.26
TCOF1-215ENST00000515516 OTOFQ9HC10 1997 aa16.68■□□□□ 0.26
TCOF1-215ENST00000515516 IDH1O75874 414 aaKnown RBP16.68■□□□□ 0.26
TCOF1-215ENST00000515516 DHX36Q9H2U1 1008 aaKnown RBP16.68■□□□□ 0.26
TCOF1-215ENST00000515516 TLR7Q9NYK1 1049 aaKnown RBP16.68■□□□□ 0.26
TCOF1-215ENST00000515516 PPP4CP60510 307 aa16.67■□□□□ 0.26
TCOF1-215ENST00000515516 GADL1Q6ZQY3 521 aa16.67■□□□□ 0.26
TCOF1-215ENST00000515516 CLASRPQ8N2M8 674 aaKnown RBP16.67■□□□□ 0.26
TCOF1-215ENST00000515516 RHPN1Q8TCX5 695 aa16.67■□□□□ 0.26
TCOF1-215ENST00000515516 PARK7Q99497 189 aaKnown RBP16.67■□□□□ 0.26
TCOF1-215ENST00000515516 TRIM34Q9BYJ4 488 aa16.67■□□□□ 0.26
TCOF1-215ENST00000515516 PIH1D3Q9NQM4 214 aaKnown RBP16.67■□□□□ 0.26
TCOF1-215ENST00000515516 ZBTB40Q9NUA8 1239 aa16.67■□□□□ 0.26
TCOF1-215ENST00000515516 PI4KBQ9UBF8 816 aa16.67■□□□□ 0.26
TCOF1-215ENST00000515516 AFG3L2Q9Y4W6 797 aa16.67■□□□□ 0.26
TCOF1-215ENST00000515516 APBB1O00213 710 aa16.66■□□□□ 0.26
TCOF1-215ENST00000515516 GNRH1P01148 92 aa16.66■□□□□ 0.26
TCOF1-215ENST00000515516 IFIT2P09913 472 aaKnown RBP16.66■□□□□ 0.26
TCOF1-215ENST00000515516 CYP7A1P22680 504 aa16.66■□□□□ 0.26
TCOF1-215ENST00000515516 LACTBP83111 547 aaPredicted RBP16.66■□□□□ 0.26
TCOF1-215ENST00000515516 MAP3K12Q12852 859 aa16.66■□□□□ 0.26
TCOF1-215ENST00000515516 NBPF11Q86T75 865 aa16.66■□□□□ 0.26
TCOF1-215ENST00000515516 CERS3Q8IU89 383 aa16.66■□□□□ 0.26
TCOF1-215ENST00000515516 TGFBRAP1Q8WUH2 860 aa16.66■□□□□ 0.26
TCOF1-215ENST00000515516 KIF1BPQ96EK5 621 aa16.66■□□□□ 0.26
TCOF1-215ENST00000515516 BCL11AQ9H165 835 aa16.66■□□□□ 0.26
TCOF1-215ENST00000515516 IL1RAPL2Q9NP60 686 aa16.66■□□□□ 0.26
TCOF1-215ENST00000515516 CPA4Q9UI42 421 aa16.66■□□□□ 0.26
TCOF1-215ENST00000515516 HERC5Q9UII4 1024 aaKnown RBP16.66■□□□□ 0.26
TCOF1-215ENST00000515516 A0A0G2JLL6 359 aaPredicted RBP16.65■□□□□ 0.26
TCOF1-215ENST00000515516 TRIM75PA6NK02 468 aa16.65■□□□□ 0.26
TCOF1-215ENST00000515516 FAM196BA6NMK8 535 aa16.65■□□□□ 0.26
TCOF1-215ENST00000515516 RAB11FIP3O75154 756 aa16.65■□□□□ 0.26
TCOF1-215ENST00000515516 SLURP2P0DP57 97 aa16.65■□□□□ 0.26
TCOF1-215ENST00000515516 C17orf99Q6UX52 265 aa16.65■□□□□ 0.26
TCOF1-215ENST00000515516 PRRT2Q7Z6L0 340 aaPredicted RBP16.65■□□□□ 0.26
TCOF1-215ENST00000515516 MAPKAPK5Q8IW41 473 aa16.65■□□□□ 0.26
TCOF1-215ENST00000515516 CRACR2BQ8N4Y2 399 aaPredicted RBP16.65■□□□□ 0.26
TCOF1-215ENST00000515516 TBC1D2Q9BYX2 928 aa16.65■□□□□ 0.26
TCOF1-215ENST00000515516 MYH2Q9UKX2 1941 aa16.64■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms