RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 PLCH2O75038 1416 aa8.07□□□□□ -1.12
NUP54-218ENST00000515460 MEGF11A6BM72 1044 aa8.07□□□□□ -1.12
NUP54-218ENST00000515460 METTL12A8MUP2 240 aa8.07□□□□□ -1.12
NUP54-218ENST00000515460 ADAMTS4O75173 837 aa8.07□□□□□ -1.12
NUP54-218ENST00000515460 DLGAP3O95886 979 aa8.07□□□□□ -1.12
NUP54-218ENST00000515460 DRD2P14416 443 aa8.07□□□□□ -1.12
NUP54-218ENST00000515460 GP2P55259 537 aaKnown RBP8.07□□□□□ -1.12
NUP54-218ENST00000515460 GSTM4Q03013 218 aa8.07□□□□□ -1.12
NUP54-218ENST00000515460 PEAR1Q5VY43 1037 aaPredicted RBP8.07□□□□□ -1.12
NUP54-218ENST00000515460 INTS5Q6P9B9 1019 aaKnown RBP8.07□□□□□ -1.12
NUP54-218ENST00000515460 ANKLE2Q86XL3 938 aa8.07□□□□□ -1.12
NUP54-218ENST00000515460 GLYCTKQ8IVS8 523 aa8.07□□□□□ -1.12
NUP54-218ENST00000515460 FBXL6Q8N531 539 aa8.07□□□□□ -1.12
NUP54-218ENST00000515460 RETREG2Q8NC44 543 aa8.07□□□□□ -1.12
NUP54-218ENST00000515460 C8orf37Q96NL8 207 aa8.07□□□□□ -1.12
NUP54-218ENST00000515460 AMOTL2Q9Y2J4 779 aa8.07□□□□□ -1.12
NUP54-218ENST00000515460 COL16A1Q07092 1604 aaPredicted RBP8.07□□□□□ -1.12
NUP54-218ENST00000515460 LOC100289279A0A1B0GTE1 492 aa8.06□□□□□ -1.12
NUP54-218ENST00000515460 H3BRB1 525 aa8.06□□□□□ -1.12
NUP54-218ENST00000515460 ICMTO60725 284 aa8.06□□□□□ -1.12
NUP54-218ENST00000515460 IRAK1P51617 712 aa8.06□□□□□ -1.12
NUP54-218ENST00000515460 EFCAB2Q5VUJ9 269 aa8.06□□□□□ -1.12
NUP54-218ENST00000515460 TUT1Q9H6E5 874 aaKnown RBP8.06□□□□□ -1.12
NUP54-218ENST00000515460 ZFYVE28Q9HCC9 887 aa8.06□□□□□ -1.12
NUP54-218ENST00000515460 CYP4F12Q9HCS2 524 aa8.06□□□□□ -1.12
NUP54-218ENST00000515460 HIF3AQ9Y2N7 669 aa8.06□□□□□ -1.12
NUP54-218ENST00000515460 CNTLNQ9NXG0 1405 aa8.05□□□□□ -1.12
NUP54-218ENST00000515460 ESRRAP11474 423 aaPredicted RBP8.05□□□□□ -1.12
NUP54-218ENST00000515460 AFAP1Q8N556 730 aa8.05□□□□□ -1.12
NUP54-218ENST00000515460 TMPRSS13Q9BYE2 586 aa8.05□□□□□ -1.12
NUP54-218ENST00000515460 BHLHE41Q9C0J9 482 aaPredicted RBP8.05□□□□□ -1.12
NUP54-218ENST00000515460 A2ML1A8K2U0 1454 aa8.05□□□□□ -1.12
NUP54-218ENST00000515460 NWD1Q149M9 1564 aa8.05□□□□□ -1.12
NUP54-218ENST00000515460 SPINK2P20155 84 aa8.04□□□□□ -1.12
NUP54-218ENST00000515460 SERPINB4P48594 390 aa8.04□□□□□ -1.12
NUP54-218ENST00000515460 USP11P51784 963 aa8.04□□□□□ -1.12
NUP54-218ENST00000515460 NFKBIBQ15653 356 aa8.04□□□□□ -1.12
NUP54-218ENST00000515460 GJD3Q8N144 294 aa8.04□□□□□ -1.12
NUP54-218ENST00000515460 SMG8Q8ND04 991 aaKnown RBP8.04□□□□□ -1.12
NUP54-218ENST00000515460 ATG3Q9NT62 314 aa8.04□□□□□ -1.12
NUP54-218ENST00000515460 BRPF3Q9ULD4 1205 aa8.04□□□□□ -1.12
NUP54-218ENST00000515460 BLMP54132 1417 aaPredicted RBP8.03□□□□□ -1.12
NUP54-218ENST00000515460 AGLP35573 1532 aa8.03□□□□□ -1.12
NUP54-218ENST00000515460 DIP2CQ9Y2E4 1556 aa8.03□□□□□ -1.12
NUP54-218ENST00000515460 HOXA10P31260 410 aaPredicted RBP8.03□□□□□ -1.12
NUP54-218ENST00000515460 EXOSC6Q5RKV6 272 aaKnown RBP8.03□□□□□ -1.12
NUP54-218ENST00000515460 DTX1Q86Y01 620 aa8.03□□□□□ -1.12
NUP54-218ENST00000515460 CCER1Q8TC90 406 aaPredicted RBP8.03□□□□□ -1.12
NUP54-218ENST00000515460 KRTAP4-12Q9BQ66 201 aa8.03□□□□□ -1.12
NUP54-218ENST00000515460 CDK11AQ9UQ88 783 aaPredicted RBP8.03□□□□□ -1.12
NUP54-218ENST00000515460 NDUFB5O43674 189 aa8.02□□□□□ -1.13
NUP54-218ENST00000515460 TIAF1O95411 115 aa8.02□□□□□ -1.13
NUP54-218ENST00000515460 WNT11O96014 354 aa8.02□□□□□ -1.13
NUP54-218ENST00000515460 KRTAP1-3Q8IUG1 177 aa8.02□□□□□ -1.13
NUP54-218ENST00000515460 FBLIM1Q8WUP2 373 aa8.02□□□□□ -1.13
NUP54-218ENST00000515460 SOX17Q9H6I2 414 aaPredicted RBP8.02□□□□□ -1.13
NUP54-218ENST00000515460 SUGCTQ9HAC7 445 aa8.02□□□□□ -1.13
NUP54-218ENST00000515460 CFAP74Q9C0B2 1584 aa8.01□□□□□ -1.13
NUP54-218ENST00000515460 ARHGAP35Q9NRY4 1499 aa8.01□□□□□ -1.13
NUP54-218ENST00000515460 FAM95CA0A1B0GW59 222 aa8.01□□□□□ -1.13
NUP54-218ENST00000515460 PAX4O43316 350 aa8.01□□□□□ -1.13
NUP54-218ENST00000515460 NEFLP07196 543 aa8.01□□□□□ -1.13
NUP54-218ENST00000515460 TAL1P17542 331 aaPredicted RBP8.01□□□□□ -1.13
NUP54-218ENST00000515460 SPRED3Q2MJR0 410 aa8.01□□□□□ -1.13
NUP54-218ENST00000515460 CDPF1Q6NVV7 123 aa8.01□□□□□ -1.13
NUP54-218ENST00000515460 SHISA5Q8N114 240 aa8.01□□□□□ -1.13
NUP54-218ENST00000515460 GIMAP7Q8NHV1 300 aa8.01□□□□□ -1.13
NUP54-218ENST00000515460 PIM2Q9P1W9 311 aa8.01□□□□□ -1.13
NUP54-218ENST00000515460 LEMD3Q9Y2U8 911 aa8.01□□□□□ -1.13
NUP54-218ENST00000515460 RTEL1-TNFRSF6BF6WH68 1400 aa8.01□□□□□ -1.13
NUP54-218ENST00000515460 IQGAP1P46940 1657 aa8.01□□□□□ -1.13
NUP54-218ENST00000515460 KDM5CP41229 1560 aa8.01□□□□□ -1.13
NUP54-218ENST00000515460 MED14O60244 1454 aa8□□□□□ -1.13
NUP54-218ENST00000515460 SCAF11Q99590 1463 aaKnown RBP8□□□□□ -1.13
NUP54-218ENST00000515460 MROH2AA6NES4 1674 aa8□□□□□ -1.13
NUP54-218ENST00000515460 A0A096LPE4 126 aa8□□□□□ -1.13
NUP54-218ENST00000515460 A0A1W2PP55 124 aa8□□□□□ -1.13
NUP54-218ENST00000515460 A0A1W2PPZ6 126 aa8□□□□□ -1.13
NUP54-218ENST00000515460 F13BP05160 661 aa8□□□□□ -1.13
NUP54-218ENST00000515460 PCDH1Q08174 1060 aa8□□□□□ -1.13
NUP54-218ENST00000515460 PDE3BQ13370 1112 aa8□□□□□ -1.13
NUP54-218ENST00000515460 PAOXQ6QHF9 649 aa8□□□□□ -1.13
NUP54-218ENST00000515460 TXNDC2Q86VQ3 553 aa8□□□□□ -1.13
NUP54-218ENST00000515460 OSBPL1AQ9BXW6 950 aa8□□□□□ -1.13
NUP54-218ENST00000515460 LIN7BQ9HAP6 207 aa8□□□□□ -1.13
NUP54-218ENST00000515460 FMN1Q68DA7 1419 aa8□□□□□ -1.13
NUP54-218ENST00000515460 FGD6Q6ZV73 1430 aa8□□□□□ -1.13
NUP54-218ENST00000515460 TMEM94Q12767 1356 aa7.99□□□□□ -1.13
NUP54-218ENST00000515460 ABCC1P33527 1531 aa7.99□□□□□ -1.13
NUP54-218ENST00000515460 ADGBQ8N7X0 1667 aa7.99□□□□□ -1.13
NUP54-218ENST00000515460 MAOBP27338 520 aa7.99□□□□□ -1.13
NUP54-218ENST00000515460 GRIA4P48058 902 aa7.99□□□□□ -1.13
NUP54-218ENST00000515460 SOX4Q06945 474 aaPredicted RBP7.99□□□□□ -1.13
NUP54-218ENST00000515460 ZNF423Q2M1K9 1284 aa7.99□□□□□ -1.13
NUP54-218ENST00000515460 LCE3BQ5TA77 95 aa7.99□□□□□ -1.13
NUP54-218ENST00000515460 USPL1Q5W0Q7 1092 aa7.99□□□□□ -1.13
NUP54-218ENST00000515460 CCNJLQ8IV13 435 aa7.99□□□□□ -1.13
NUP54-218ENST00000515460 C2CD4AQ8NCU7 369 aaPredicted RBP7.99□□□□□ -1.13
NUP54-218ENST00000515460 CLTCQ00610 1675 aaKnown RBP7.98□□□□□ -1.13
NUP54-218ENST00000515460 SHPRHQ149N8 1683 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms