RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 FAM198AQ9UFP1 575 aa25.11■■□□□ 1.61
LSM6-207ENST00000515311 MKRN1Q9UHC7 482 aaKnown RBP25.11■■□□□ 1.61
LSM6-207ENST00000515311 POLR2AP24928 1970 aaKnown RBP25.11■■□□□ 1.61
LSM6-207ENST00000515311 ZMYM6O95789 1325 aa25.11■■□□□ 1.61
LSM6-207ENST00000515311 CNTNAP1P78357 1384 aa25.1■■□□□ 1.61
LSM6-207ENST00000515311 REC8O95072 547 aa25.1■■□□□ 1.61
LSM6-207ENST00000515311 YY1P25490 414 aa25.1■■□□□ 1.61
LSM6-207ENST00000515311 TNNI2P48788 182 aa25.1■■□□□ 1.61
LSM6-207ENST00000515311 DCP1AQ9NPI6 582 aaPredicted RBP25.1■■□□□ 1.61
LSM6-207ENST00000515311 DDX4Q9NQI0 724 aaKnown RBP25.1■■□□□ 1.61
LSM6-207ENST00000515311 LAMB1P07942 1786 aa25.09■■□□□ 1.61
LSM6-207ENST00000515311 TCP10L2B9ZVM9 353 aa25.09■■□□□ 1.61
LSM6-207ENST00000515311 APPP05067 770 aa25.09■■□□□ 1.61
LSM6-207ENST00000515311 ALX1Q15699 326 aa25.09■■□□□ 1.61
LSM6-207ENST00000515311 MAPKAPK5Q8IW41 473 aa25.09■■□□□ 1.61
LSM6-207ENST00000515311 EPB41L4AQ9HCS5 686 aaPredicted RBP25.09■■□□□ 1.61
LSM6-207ENST00000515311 ANO2Q9NQ90 1003 aa25.09■■□□□ 1.61
LSM6-207ENST00000515311 LAMA4Q16363 1823 aa25.09■■□□□ 1.61
LSM6-207ENST00000515311 PICALMQ13492 652 aa25.08■■□□□ 1.61
LSM6-207ENST00000515311 LDHDQ86WU2 507 aa25.08■■□□□ 1.61
LSM6-207ENST00000515311 IFNL3Q8IZI9 196 aa25.08■■□□□ 1.61
LSM6-207ENST00000515311 FAM151AQ8WW52 585 aa25.08■■□□□ 1.61
LSM6-207ENST00000515311 DCPSQ96C86 337 aaKnown RBP25.08■■□□□ 1.61
LSM6-207ENST00000515311 LSG1Q9H089 658 aaKnown RBP25.08■■□□□ 1.61
LSM6-207ENST00000515311 OSBPL5Q9H0X9 879 aaPredicted RBP25.08■■□□□ 1.61
LSM6-207ENST00000515311 ATRNL1Q5VV63 1379 aa25.07■■□□□ 1.6
LSM6-207ENST00000515311 EPB41L2O43491 1005 aaKnown RBP25.07■■□□□ 1.6
LSM6-207ENST00000515311 PPP2R3BQ9Y5P8 575 aa25.07■■□□□ 1.6
LSM6-207ENST00000515311 TDO2P48775 406 aa25.06■■□□□ 1.6
LSM6-207ENST00000515311 PTH1RQ03431 593 aa25.06■■□□□ 1.6
LSM6-207ENST00000515311 TCP10Q12799 353 aa25.06■■□□□ 1.6
LSM6-207ENST00000515311 MAP4K1Q92918 833 aa25.06■■□□□ 1.6
LSM6-207ENST00000515311 NAPBQ9H115 298 aa25.06■■□□□ 1.6
LSM6-207ENST00000515311 DEFB129Q9H1M3 183 aa25.06■■□□□ 1.6
LSM6-207ENST00000515311 RASA3Q14644 834 aa25.05■■□□□ 1.6
LSM6-207ENST00000515311 SULF1Q8IWU6 871 aa25.05■■□□□ 1.6
LSM6-207ENST00000515311 DHX36Q9H2U1 1008 aaKnown RBP25.05■■□□□ 1.6
LSM6-207ENST00000515311 MCM9Q9NXL9 1143 aa25.05■■□□□ 1.6
LSM6-207ENST00000515311 ARPP21Q9UBL0 812 aaPredicted RBP25.05■■□□□ 1.6
LSM6-207ENST00000515311 U3KPZ7 1027 aaPredicted RBP25.05■■□□□ 1.6
LSM6-207ENST00000515311 FGAP02671 866 aa25.04■■□□□ 1.6
LSM6-207ENST00000515311 POTEIP0CG38 1075 aa25.04■■□□□ 1.6
LSM6-207ENST00000515311 POTEJP0CG39 1038 aa25.04■■□□□ 1.6
LSM6-207ENST00000515311 SBK1Q52WX2 424 aa25.04■■□□□ 1.6
LSM6-207ENST00000515311 ZFPM1Q8IX07 1006 aa25.04■■□□□ 1.6
LSM6-207ENST00000515311 AMOTL1Q8IY63 956 aa25.04■■□□□ 1.6
LSM6-207ENST00000515311 CTNNA3Q9UI47 895 aa25.04■■□□□ 1.6
LSM6-207ENST00000515311 CLEC11AQ9Y240 323 aa25.04■■□□□ 1.6
LSM6-207ENST00000515311 KRT26Q7Z3Y9 468 aa25.03■■□□□ 1.6
LSM6-207ENST00000515311 SAP30BPQ9UHR5 308 aaKnown RBP25.03■■□□□ 1.6
LSM6-207ENST00000515311 SIPA1L1O43166 1804 aa25.02■■□□□ 1.6
LSM6-207ENST00000515311 USP17L12C9JPN9 530 aa25.02■■□□□ 1.6
LSM6-207ENST00000515311 USP17L21D6R901 530 aa25.02■■□□□ 1.6
LSM6-207ENST00000515311 KIF3CO14782 793 aa25.02■■□□□ 1.6
LSM6-207ENST00000515311 CTR9Q6PD62 1173 aa25.02■■□□□ 1.6
LSM6-207ENST00000515311 TEPSINQ96N21 525 aa25.02■■□□□ 1.6
LSM6-207ENST00000515311 TMEM39BQ9GZU3 492 aa25.02■■□□□ 1.6
LSM6-207ENST00000515311 PALD1Q9ULE6 856 aa25.02■■□□□ 1.6
LSM6-207ENST00000515311 C12orf60Q5U649 245 aa25.01■■□□□ 1.59
LSM6-207ENST00000515311 CDC37L1Q7L3B6 337 aa25.01■■□□□ 1.59
LSM6-207ENST00000515311 SH3BP5LQ7L8J4 393 aa25.01■■□□□ 1.59
LSM6-207ENST00000515311 TTC6Q86TZ1 520 aa25.01■■□□□ 1.59
LSM6-207ENST00000515311 ZSCAN29Q8IWY8 852 aaPredicted RBP25.01■■□□□ 1.59
LSM6-207ENST00000515311 ZNF784Q8NCA9 323 aaPredicted RBP25.01■■□□□ 1.59
LSM6-207ENST00000515311 BACH2Q9BYV9 841 aa25.01■■□□□ 1.59
LSM6-207ENST00000515311 TAOK2Q9UL54 1235 aa25.01■■□□□ 1.59
LSM6-207ENST00000515311 RBM8AQ9Y5S9 174 aaKnown RBP25.01■■□□□ 1.59
LSM6-207ENST00000515311 DDTLA6NHG4 134 aaPredicted RBP25■■□□□ 1.59
LSM6-207ENST00000515311 SEC24BO95487 1268 aa25■■□□□ 1.59
LSM6-207ENST00000515311 POLR3DP05423 398 aaPredicted RBP25■■□□□ 1.59
LSM6-207ENST00000515311 SCAF8Q9UPN6 1271 aaKnown RBP25■■□□□ 1.59
LSM6-207ENST00000515311 ROBO3Q96MS0 1386 aa25■■□□□ 1.59
LSM6-207ENST00000515311 ADM5C9JUS6 153 aa24.99■■□□□ 1.59
LSM6-207ENST00000515311 HLA-DOAP06340 250 aa24.99■■□□□ 1.59
LSM6-207ENST00000515311 MAP1SQ66K74 1059 aaPredicted RBP24.99■■□□□ 1.59
LSM6-207ENST00000515311 CHADLQ6NUI6 762 aa24.99■■□□□ 1.59
LSM6-207ENST00000515311 CSRNP1Q96S65 589 aa24.99■■□□□ 1.59
LSM6-207ENST00000515311 USP26Q9BXU7 913 aa24.99■■□□□ 1.59
LSM6-207ENST00000515311 EHD4Q9H223 541 aa24.99■■□□□ 1.59
LSM6-207ENST00000515311 PI4KBQ9UBF8 816 aa24.99■■□□□ 1.59
LSM6-207ENST00000515311 ANAPC4Q9UJX5 808 aa24.99■■□□□ 1.59
LSM6-207ENST00000515311 NECTIN1Q15223 517 aa24.98■■□□□ 1.59
LSM6-207ENST00000515311 IMMTQ16891 758 aaKnown RBP24.98■■□□□ 1.59
LSM6-207ENST00000515311 USP48Q86UV5 1035 aa24.98■■□□□ 1.59
LSM6-207ENST00000515311 HOOK2Q96ED9 719 aa24.98■■□□□ 1.59
LSM6-207ENST00000515311 MINDY4BA8MYZ0 360 aa24.97■■□□□ 1.59
LSM6-207ENST00000515311 CYP2D6P10635 497 aa24.97■■□□□ 1.59
LSM6-207ENST00000515311 PLCD1P51178 756 aa24.97■■□□□ 1.59
LSM6-207ENST00000515311 PPARAQ07869 468 aa24.97■■□□□ 1.59
LSM6-207ENST00000515311 METTL16Q86W50 562 aaKnown RBP24.97■■□□□ 1.59
LSM6-207ENST00000515311 GLIS2Q9BZE0 524 aaPredicted RBP24.97■■□□□ 1.59
LSM6-207ENST00000515311 CYP2D7A0A087X1C5 515 aa24.96■■□□□ 1.59
LSM6-207ENST00000515311 ZNF213O14771 459 aa24.96■■□□□ 1.59
LSM6-207ENST00000515311 SUPT20HL1Q3ZLR7 823 aa24.96■■□□□ 1.59
LSM6-207ENST00000515311 FOXP4Q8IVH2 680 aaPredicted RBP24.96■■□□□ 1.59
LSM6-207ENST00000515311 CDAN1Q8IWY9 1227 aa24.96■■□□□ 1.59
LSM6-207ENST00000515311 MYH8P13535 1937 aa24.96■■□□□ 1.59
LSM6-207ENST00000515311 SLC3A2P08195 630 aaKnown RBP24.95■■□□□ 1.58
LSM6-207ENST00000515311 SLC4A8Q2Y0W8 1093 aa24.95■■□□□ 1.58
LSM6-207ENST00000515311 RNF20Q5VTR2 975 aa24.95■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms