RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 MAB21L3Q8N8X9 362 aa13.6□□□□□ -0.23
LIMCH1-213ENST00000511496 SH3GL2Q99962 352 aa13.6□□□□□ -0.23
LIMCH1-213ENST00000511496 TRPC6Q9Y210 931 aa13.6□□□□□ -0.23
LIMCH1-213ENST00000511496 SLC27A2O14975 620 aa13.6□□□□□ -0.23
LIMCH1-213ENST00000511496 SRGAP2O75044 1071 aa13.6□□□□□ -0.23
LIMCH1-213ENST00000511496 MRPS25P82663 173 aaKnown RBP13.6□□□□□ -0.23
LIMCH1-213ENST00000511496 SLC30A9Q6PML9 568 aa13.6□□□□□ -0.23
LIMCH1-213ENST00000511496 TTLL7Q6ZT98 887 aa13.6□□□□□ -0.23
LIMCH1-213ENST00000511496 ACRBPQ8NEB7 543 aa13.6□□□□□ -0.23
LIMCH1-213ENST00000511496 OR8K1Q8NGG5 319 aa13.6□□□□□ -0.23
LIMCH1-213ENST00000511496 EZH1Q92800 747 aaPredicted RBP13.6□□□□□ -0.23
LIMCH1-213ENST00000511496 TMEM165Q9HC07 324 aa13.6□□□□□ -0.23
LIMCH1-213ENST00000511496 GOPCQ9HD26 462 aa13.6□□□□□ -0.23
LIMCH1-213ENST00000511496 BATF3Q9NR55 127 aa13.6□□□□□ -0.23
LIMCH1-213ENST00000511496 CCT4P50991 539 aaKnown RBP13.6□□□□□ -0.23
LIMCH1-213ENST00000511496 OLFM4Q6UX06 510 aa13.6□□□□□ -0.23
LIMCH1-213ENST00000511496 B4GALNT2Q8NHY0 566 aa13.6□□□□□ -0.23
LIMCH1-213ENST00000511496 SEC62Q99442 399 aaKnown RBP13.6□□□□□ -0.23
LIMCH1-213ENST00000511496 POLR3DP05423 398 aaPredicted RBP13.59□□□□□ -0.23
LIMCH1-213ENST00000511496 RPS6KB1P23443 525 aa13.59□□□□□ -0.23
LIMCH1-213ENST00000511496 NECTIN2Q92692 538 aa13.59□□□□□ -0.23
LIMCH1-213ENST00000511496 HDAC6Q9UBN7 1215 aa13.59□□□□□ -0.23
LIMCH1-213ENST00000511496 HOOK1Q9UJC3 728 aaKnown RBP13.59□□□□□ -0.23
LIMCH1-213ENST00000511496 NBPF7P0C2Y1 421 aaPredicted RBP13.59□□□□□ -0.23
LIMCH1-213ENST00000511496 MCM3P25205 808 aa13.59□□□□□ -0.23
LIMCH1-213ENST00000511496 LSP1P33241 339 aa13.59□□□□□ -0.23
LIMCH1-213ENST00000511496 TUBB2AQ13885 445 aa13.59□□□□□ -0.23
LIMCH1-213ENST00000511496 RRP36Q96EU6 259 aaKnown RBP13.59□□□□□ -0.23
LIMCH1-213ENST00000511496 TUBB2BQ9BVA1 445 aa13.59□□□□□ -0.23
LIMCH1-213ENST00000511496 E7EVH7 732 aa13.58□□□□□ -0.23
LIMCH1-213ENST00000511496 PYGBP11216 843 aa13.58□□□□□ -0.23
LIMCH1-213ENST00000511496 MIS18BP1Q6P0N0 1132 aa13.58□□□□□ -0.23
LIMCH1-213ENST00000511496 FAM227BQ96M60 508 aa13.58□□□□□ -0.23
LIMCH1-213ENST00000511496 CCT8L2Q96SF2 557 aa13.58□□□□□ -0.23
LIMCH1-213ENST00000511496 PSMD1Q99460 953 aa13.58□□□□□ -0.23
LIMCH1-213ENST00000511496 TSGA10Q9BZW7 698 aa13.58□□□□□ -0.23
LIMCH1-213ENST00000511496 SUDS3Q9H7L9 328 aaPredicted RBP13.58□□□□□ -0.23
LIMCH1-213ENST00000511496 L3MBTL1Q9Y468 752 aa13.58□□□□□ -0.23
LIMCH1-213ENST00000511496 GOLGA8KD6RF30 607 aa13.58□□□□□ -0.24
LIMCH1-213ENST00000511496 RTN3O95197 1032 aaPredicted RBP13.58□□□□□ -0.24
LIMCH1-213ENST00000511496 SPRED3Q2MJR0 410 aa13.58□□□□□ -0.24
LIMCH1-213ENST00000511496 ADALQ6DHV7 355 aa13.58□□□□□ -0.24
LIMCH1-213ENST00000511496 Q6ZUG5 572 aa13.58□□□□□ -0.24
LIMCH1-213ENST00000511496 HOOK2Q96ED9 719 aa13.58□□□□□ -0.24
LIMCH1-213ENST00000511496 MMS19Q96T76 1030 aa13.58□□□□□ -0.24
LIMCH1-213ENST00000511496 PPANQ9NQ55 473 aaKnown RBP13.58□□□□□ -0.24
LIMCH1-213ENST00000511496 FBXO3Q9UK99 471 aa13.58□□□□□ -0.24
LIMCH1-213ENST00000511496 RAPGEF6Q8TEU7 1601 aa13.58□□□□□ -0.24
LIMCH1-213ENST00000511496 AKR1B15C9JRZ8 316 aaPredicted RBP13.58□□□□□ -0.24
LIMCH1-213ENST00000511496 PPFIA2O75334 1257 aa13.58□□□□□ -0.24
LIMCH1-213ENST00000511496 CAGE1Q8TC20 777 aa13.58□□□□□ -0.24
LIMCH1-213ENST00000511496 RHPN1Q8TCX5 695 aa13.58□□□□□ -0.24
LIMCH1-213ENST00000511496 FAM167BQ9BTA0 163 aa13.58□□□□□ -0.24
LIMCH1-213ENST00000511496 TMX4Q9H1E5 349 aaPredicted RBP13.58□□□□□ -0.24
LIMCH1-213ENST00000511496 HOMER3Q9NSC5 361 aa13.58□□□□□ -0.24
LIMCH1-213ENST00000511496 DNM1LO00429 736 aa13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 PES1O00541 588 aaKnown RBP13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 OPA1O60313 960 aa13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 NEFHP12036 1026 aa13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 APBA1Q02410 837 aa13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 TBX2Q13207 712 aaPredicted RBP13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 MTA1Q13330 715 aa13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 FILIP1LQ4L180 1135 aa13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 CADPS2Q86UW7 1296 aa13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 RNPC3Q96LT9 517 aaKnown RBP13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 ADGRL3Q9HAR2 1447 aa13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 NSD2O96028 1365 aa13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 YTHDF3Q7Z739 585 aaKnown RBP13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 EPN3Q9H201 632 aa13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 NOD2Q9HC29 1040 aa13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 ATXN2Q99700 1313 aaKnown RBP13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 FAM163BP0C2L3 166 aa13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 PNOCQ13519 176 aa13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 PLCB4Q15147 1175 aa13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 HIBCHQ6NVY1 386 aaPredicted RBP13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 CCNI2Q6ZMN8 369 aaPredicted RBP13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 ARHGEF25Q86VW2 580 aa13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 PPFIBP1Q86W92 1011 aa13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 NUP58Q9BVL2 599 aa13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 GUCA1BQ9UMX6 200 aa13.57□□□□□ -0.24
LIMCH1-213ENST00000511496 PAPOLAP51003 745 aaKnown RBP13.56□□□□□ -0.24
LIMCH1-213ENST00000511496 TTMPQ5BVD1 217 aa13.56□□□□□ -0.24
LIMCH1-213ENST00000511496 MSL1Q68DK7 614 aa13.56□□□□□ -0.24
LIMCH1-213ENST00000511496 NLRP14Q86W24 1093 aa13.56□□□□□ -0.24
LIMCH1-213ENST00000511496 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.56□□□□□ -0.24
LIMCH1-213ENST00000511496 CLIC4Q9Y696 253 aa13.56□□□□□ -0.24
LIMCH1-213ENST00000511496 SMIM24O75264 130 aa13.56□□□□□ -0.24
LIMCH1-213ENST00000511496 ANP32DO95626 131 aa13.56□□□□□ -0.24
LIMCH1-213ENST00000511496 SF3A3Q12874 501 aaKnown RBP eCLIP13.56□□□□□ -0.24
LIMCH1-213ENST00000511496 OTUD7BQ6GQQ9 843 aa13.56□□□□□ -0.24
LIMCH1-213ENST00000511496 MCM10Q7L590 875 aa13.56□□□□□ -0.24
LIMCH1-213ENST00000511496 PNMA8AQ86V59 439 aaPredicted RBP13.56□□□□□ -0.24
LIMCH1-213ENST00000511496 TRMT44Q8IYL2 757 aaKnown RBP13.56□□□□□ -0.24
LIMCH1-213ENST00000511496 TRIM58Q8NG06 486 aa13.56□□□□□ -0.24
LIMCH1-213ENST00000511496 EPAS1Q99814 870 aa13.56□□□□□ -0.24
LIMCH1-213ENST00000511496 PAPOLBQ9NRJ5 636 aaKnown RBP13.56□□□□□ -0.24
LIMCH1-213ENST00000511496 ZNF232Q9UNY5 417 aa13.56□□□□□ -0.24
LIMCH1-213ENST00000511496 AOX1Q06278 1338 aa13.55□□□□□ -0.24
LIMCH1-213ENST00000511496 GNAT1P11488 350 aa13.55□□□□□ -0.24
LIMCH1-213ENST00000511496 NNTQ13423 1086 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms