RNA–Protein interactions for RNA: ENST00000510737.1

USP53-206, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 5

Gene USP53, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-206ENST00000510737 SULF2Q8IWU5 870 aa12.49□□□□□ -0.41
USP53-206ENST00000510737 C3orf58Q8NDZ4 430 aa12.49□□□□□ -0.41
USP53-206ENST00000510737 TREHO43280 583 aa12.48□□□□□ -0.41
USP53-206ENST00000510737 BNIP3Q12983 259 aa12.48□□□□□ -0.41
USP53-206ENST00000510737 ENOX2Q16206 610 aaKnown RBP12.48□□□□□ -0.41
USP53-206ENST00000510737 PLD6Q8N2A8 252 aaKnown RBP12.48□□□□□ -0.41
USP53-206ENST00000510737 AKAP2Q9Y2D5 859 aa12.48□□□□□ -0.41
USP53-206ENST00000510737 PPP2R3AQ06190 1150 aa12.47□□□□□ -0.41
USP53-206ENST00000510737 XRCC5P13010 732 aaKnown RBP12.46□□□□□ -0.41
USP53-206ENST00000510737 ARNTP27540 789 aa12.46□□□□□ -0.41
USP53-206ENST00000510737 ZNF252P-AS1Q0IIN9 211 aa12.46□□□□□ -0.41
USP53-206ENST00000510737 CYP27C1Q4G0S4 372 aa12.46□□□□□ -0.41
USP53-206ENST00000510737 ZC3H12AQ5D1E8 599 aaKnown RBP12.46□□□□□ -0.41
USP53-206ENST00000510737 AGBL5Q8NDL9 886 aa12.46□□□□□ -0.41
USP53-206ENST00000510737 SETDB2Q96T68 719 aa12.46□□□□□ -0.41
USP53-206ENST00000510737 SLC5A6Q9Y289 635 aa12.46□□□□□ -0.41
USP53-206ENST00000510737 DCAF1Q9Y4B6 1507 aa12.46□□□□□ -0.42
USP53-206ENST00000510737 RNGTTO60942 597 aaKnown RBP12.45□□□□□ -0.42
USP53-206ENST00000510737 PDE4CQ08493 712 aa12.45□□□□□ -0.42
USP53-206ENST00000510737 MAP1SQ66K74 1059 aaPredicted RBP12.45□□□□□ -0.42
USP53-206ENST00000510737 ISL2Q96A47 359 aa12.45□□□□□ -0.42
USP53-206ENST00000510737 CACNA2D2Q9NY47 1150 aa12.45□□□□□ -0.42
USP53-206ENST00000510737 MAPK1P28482 360 aa12.44□□□□□ -0.42
USP53-206ENST00000510737 PLCB3Q01970 1234 aa12.44□□□□□ -0.42
USP53-206ENST00000510737 GPBAR1Q8TDU6 330 aa12.44□□□□□ -0.42
USP53-206ENST00000510737 DUSP23Q9BVJ7 150 aa12.44□□□□□ -0.42
USP53-206ENST00000510737 PPP4R2Q9NY27 417 aa12.44□□□□□ -0.42
USP53-206ENST00000510737 THOC2Q8NI27 1593 aaKnown RBP12.43□□□□□ -0.42
USP53-206ENST00000510737 BTBD11A6QL63 1104 aa12.43□□□□□ -0.42
USP53-206ENST00000510737 NME2P22392 152 aa12.43□□□□□ -0.42
USP53-206ENST00000510737 CD96P40200 585 aa12.43□□□□□ -0.42
USP53-206ENST00000510737 GRIN3AQ8TCU5 1115 aa12.43□□□□□ -0.42
USP53-206ENST00000510737 PAGE1O75459 146 aa12.42□□□□□ -0.42
USP53-206ENST00000510737 YBX3P16989 372 aaKnown RBP eCLIP12.42□□□□□ -0.42
USP53-206ENST00000510737 OGFOD2Q6N063 350 aa12.42□□□□□ -0.42
USP53-206ENST00000510737 NECAB3Q96P71 396 aaPredicted RBP12.42□□□□□ -0.42
USP53-206ENST00000510737 PCOLCE2Q9UKZ9 415 aa12.42□□□□□ -0.42
USP53-206ENST00000510737 ZCCHC6Q5VYS8 1495 aaKnown RBP12.41□□□□□ -0.42
USP53-206ENST00000510737 PAPLNO95428 1278 aa12.41□□□□□ -0.42
USP53-206ENST00000510737 BRD1O95696 1058 aa12.41□□□□□ -0.42
USP53-206ENST00000510737 RASIP1Q5U651 963 aa12.41□□□□□ -0.42
USP53-206ENST00000510737 NETO1Q8TDF5 533 aa12.41□□□□□ -0.42
USP53-206ENST00000510737 OSBPL7Q9BZF2 842 aa12.41□□□□□ -0.42
USP53-206ENST00000510737 ENC1O14682 589 aa12.4□□□□□ -0.42
USP53-206ENST00000510737 CD8BP10966 210 aa12.4□□□□□ -0.42
USP53-206ENST00000510737 BMP6P22004 513 aa12.4□□□□□ -0.42
USP53-206ENST00000510737 NTF4P34130 210 aa12.4□□□□□ -0.42
USP53-206ENST00000510737 ZNF792Q3KQV3 632 aa12.4□□□□□ -0.42
USP53-206ENST00000510737 UBE3DQ7Z6J8 389 aa12.4□□□□□ -0.42
USP53-206ENST00000510737 PLAGL2Q9UPG8 496 aa12.4□□□□□ -0.42
USP53-206ENST00000510737 KRTAP4-8A0A0G2JLE6 195 aa12.39□□□□□ -0.43
USP53-206ENST00000510737 OXCT1P55809 520 aa12.39□□□□□ -0.43
USP53-206ENST00000510737 ERVK-24P63145 666 aa12.39□□□□□ -0.43
USP53-206ENST00000510737 PLCL1Q15111 1095 aa12.39□□□□□ -0.43
USP53-206ENST00000510737 TPTE2Q6XPS3 522 aa12.39□□□□□ -0.43
USP53-206ENST00000510737 RNF214Q8ND24 703 aa12.39□□□□□ -0.43
USP53-206ENST00000510737 FBXO24O75426 580 aa12.38□□□□□ -0.43
USP53-206ENST00000510737 FAM214BQ7L5A3 538 aa12.38□□□□□ -0.43
USP53-206ENST00000510737 STK11IPQ8N1F8 1099 aa12.38□□□□□ -0.43
USP53-206ENST00000510737 TOP6BLQ8N6T0 577 aa12.38□□□□□ -0.43
USP53-206ENST00000510737 ADAMTS6Q9UKP5 1117 aa12.38□□□□□ -0.43
USP53-206ENST00000510737 WWC3Q9ULE0 1092 aa12.38□□□□□ -0.43
USP53-206ENST00000510737 CSADQ9Y600 493 aa12.38□□□□□ -0.43
USP53-206ENST00000510737 JUNBP17275 347 aaPredicted RBP12.37□□□□□ -0.43
USP53-206ENST00000510737 ASIC4Q96FT7 647 aa12.37□□□□□ -0.43
USP53-206ENST00000510737 HEXIM2Q96MH2 286 aaKnown RBP12.37□□□□□ -0.43
USP53-206ENST00000510737 CBX8Q9HC52 389 aa12.37□□□□□ -0.43
USP53-206ENST00000510737 FMR1Q06787 632 aaKnown RBP eCLIP12.36□□□□□ -0.43
USP53-206ENST00000510737 PPM1JQ5JR12 505 aa12.36□□□□□ -0.43
USP53-206ENST00000510737 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.36□□□□□ -0.43
USP53-206ENST00000510737 MISP3Q96FF7 219 aa12.36□□□□□ -0.43
USP53-206ENST00000510737 FUT4P22083 530 aa12.35□□□□□ -0.43
USP53-206ENST00000510737 RING1Q06587 406 aa12.35□□□□□ -0.43
USP53-206ENST00000510737 EMILIN2Q9BXX0 1053 aa12.35□□□□□ -0.43
USP53-206ENST00000510737 CARMIL2Q6F5E8 1435 aa12.35□□□□□ -0.43
USP53-206ENST00000510737 NESP48681 1621 aa12.34□□□□□ -0.43
USP53-206ENST00000510737 MAPK8P45983 427 aa12.34□□□□□ -0.43
USP53-206ENST00000510737 SSU72Q9NP77 194 aaKnown RBP12.34□□□□□ -0.43
USP53-206ENST00000510737 MBNL3Q9NUK0 354 aaKnown RBP12.34□□□□□ -0.43
USP53-206ENST00000510737 VAV3Q9UKW4 847 aa12.34□□□□□ -0.43
USP53-206ENST00000510737 DCDC2CA8MYV0 355 aa12.33□□□□□ -0.44
USP53-206ENST00000510737 CEACAM5P06731 702 aa12.33□□□□□ -0.44
USP53-206ENST00000510737 RNASE1P07998 156 aaKnown RBP12.33□□□□□ -0.44
USP53-206ENST00000510737 GSTT1P30711 240 aa12.33□□□□□ -0.44
USP53-206ENST00000510737 PRKCQQ04759 706 aa12.33□□□□□ -0.44
USP53-206ENST00000510737 ACSBG1Q96GR2 724 aa12.33□□□□□ -0.44
USP53-206ENST00000510737 MKNK2Q9HBH9 465 aa12.33□□□□□ -0.44
USP53-206ENST00000510737 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.33□□□□□ -0.44
USP53-206ENST00000510737 HNRNPUQ00839 825 aaKnown RBP eCLIP12.32□□□□□ -0.44
USP53-206ENST00000510737 IFI16Q16666 785 aaKnown RBP12.32□□□□□ -0.44
USP53-206ENST00000510737 C12orf40Q86WS4 652 aa12.32□□□□□ -0.44
USP53-206ENST00000510737 AOC3Q16853 763 aa12.31□□□□□ -0.44
USP53-206ENST00000510737 POU5F2Q8N7G0 328 aa12.31□□□□□ -0.44
USP53-206ENST00000510737 FBF1Q8TES7 1133 aa12.31□□□□□ -0.44
USP53-206ENST00000510737 TIMELESSQ9UNS1 1208 aa12.31□□□□□ -0.44
USP53-206ENST00000510737 NCAPD3P42695 1498 aa12.31□□□□□ -0.44
USP53-206ENST00000510737 ITIH2P19823 946 aa12.3□□□□□ -0.44
USP53-206ENST00000510737 TNKS2Q9H2K2 1166 aa12.3□□□□□ -0.44
USP53-206ENST00000510737 TRIM37O94972 964 aa12.29□□□□□ -0.44
USP53-206ENST00000510737 CELA3AP09093 270 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms