RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 RNF113AO15541 343 aaKnown RBP13.78□□□□□ -0.2
LIMCH1-210ENST00000509454 ENTPD3O75355 529 aa13.78□□□□□ -0.2
LIMCH1-210ENST00000509454 WDHD1O75717 1129 aaPredicted RBP13.78□□□□□ -0.2
LIMCH1-210ENST00000509454 MBD4O95243 580 aa13.78□□□□□ -0.2
LIMCH1-210ENST00000509454 PDE4AP27815 886 aa13.78□□□□□ -0.2
LIMCH1-210ENST00000509454 PPP4CP60510 307 aa13.78□□□□□ -0.2
LIMCH1-210ENST00000509454 CERS3Q8IU89 383 aa13.78□□□□□ -0.2
LIMCH1-210ENST00000509454 ZFPM1Q8IX07 1006 aa13.78□□□□□ -0.2
LIMCH1-210ENST00000509454 EVI5LQ96CN4 794 aa13.78□□□□□ -0.2
LIMCH1-210ENST00000509454 HOOK2Q96ED9 719 aa13.78□□□□□ -0.2
LIMCH1-210ENST00000509454 IDI2Q9BXS1 227 aa13.78□□□□□ -0.2
LIMCH1-210ENST00000509454 DDX4Q9NQI0 724 aaKnown RBP13.78□□□□□ -0.2
LIMCH1-210ENST00000509454 PPP4R2Q9NY27 417 aa13.78□□□□□ -0.2
LIMCH1-210ENST00000509454 TLL2Q9Y6L7 1015 aa13.78□□□□□ -0.2
LIMCH1-210ENST00000509454 TCRBV5S4A2TA0A5A2 114 aa13.77□□□□□ -0.21
LIMCH1-210ENST00000509454 CHGBP05060 677 aa13.77□□□□□ -0.21
LIMCH1-210ENST00000509454 ZFYP08048 801 aaPredicted RBP13.77□□□□□ -0.21
LIMCH1-210ENST00000509454 UBE3CQ15386 1083 aa13.77□□□□□ -0.21
LIMCH1-210ENST00000509454 DEFB115Q30KQ5 88 aa13.77□□□□□ -0.21
LIMCH1-210ENST00000509454 AIDAQ96BJ3 306 aa13.77□□□□□ -0.21
LIMCH1-210ENST00000509454 CSRNP1Q96S65 589 aa13.77□□□□□ -0.21
LIMCH1-210ENST00000509454 CRNKL1Q9BZJ0 848 aaKnown RBP13.77□□□□□ -0.21
LIMCH1-210ENST00000509454 ARMT1Q9H993 441 aa13.77□□□□□ -0.21
LIMCH1-210ENST00000509454 SAP30BPQ9UHR5 308 aaKnown RBP13.77□□□□□ -0.21
LIMCH1-210ENST00000509454 IREB2P48200 963 aaKnown RBP13.76□□□□□ -0.21
LIMCH1-210ENST00000509454 FKBP1BP68106 108 aa13.76□□□□□ -0.21
LIMCH1-210ENST00000509454 SLC4A8Q2Y0W8 1093 aa13.76□□□□□ -0.21
LIMCH1-210ENST00000509454 ERICH6BQ5W0A0 696 aa13.76□□□□□ -0.21
LIMCH1-210ENST00000509454 DCAF15Q66K64 600 aa13.76□□□□□ -0.21
LIMCH1-210ENST00000509454 MIGA2Q7L4E1 593 aa13.76□□□□□ -0.21
LIMCH1-210ENST00000509454 SAPCD2Q86UD0 394 aa13.76□□□□□ -0.21
LIMCH1-210ENST00000509454 LCORLQ8N3X6 602 aa13.76□□□□□ -0.21
LIMCH1-210ENST00000509454 TEPSINQ96N21 525 aa13.76□□□□□ -0.21
LIMCH1-210ENST00000509454 PAPPA2Q9BXP8 1791 aa13.76□□□□□ -0.21
LIMCH1-210ENST00000509454 ZNF157P51786 506 aaPredicted RBP13.75□□□□□ -0.21
LIMCH1-210ENST00000509454 TRIM34Q9BYJ4 488 aa13.75□□□□□ -0.21
LIMCH1-210ENST00000509454 OSBPL5Q9H0X9 879 aaPredicted RBP13.75□□□□□ -0.21
LIMCH1-210ENST00000509454 OSBPL3Q9H4L5 887 aa13.75□□□□□ -0.21
LIMCH1-210ENST00000509454 RPAP1Q9BWH6 1393 aaPredicted RBP13.75□□□□□ -0.21
LIMCH1-210ENST00000509454 FLT1P17948 1338 aa13.75□□□□□ -0.21
LIMCH1-210ENST00000509454 SSC5DA1L4H1 1573 aa13.75□□□□□ -0.21
LIMCH1-210ENST00000509454 RFX7Q2KHR2 1363 aa13.75□□□□□ -0.21
LIMCH1-210ENST00000509454 CYP4F22Q6NT55 531 aa13.74□□□□□ -0.21
LIMCH1-210ENST00000509454 APPBP2Q92624 585 aa13.74□□□□□ -0.21
LIMCH1-210ENST00000509454 DDRGK1Q96HY6 314 aa13.74□□□□□ -0.21
LIMCH1-210ENST00000509454 RIOK1Q9BRS2 568 aaKnown RBP13.74□□□□□ -0.21
LIMCH1-210ENST00000509454 PUS7LQ9H0K6 701 aaKnown RBP13.74□□□□□ -0.21
LIMCH1-210ENST00000509454 DDTLA6NHG4 134 aaPredicted RBP13.74□□□□□ -0.21
LIMCH1-210ENST00000509454 ECE1P42892 770 aa13.74□□□□□ -0.21
LIMCH1-210ENST00000509454 TTC22Q5TAA0 569 aa13.74□□□□□ -0.21
LIMCH1-210ENST00000509454 RGMBQ6NW40 437 aa13.74□□□□□ -0.21
LIMCH1-210ENST00000509454 SKAP1Q86WV1 359 aa13.74□□□□□ -0.21
LIMCH1-210ENST00000509454 ZNF341Q9BYN7 854 aa13.74□□□□□ -0.21
LIMCH1-210ENST00000509454 SLC4A4Q9Y6R1 1079 aa13.74□□□□□ -0.21
LIMCH1-210ENST00000509454 RASSF10A6NK89 507 aa13.73□□□□□ -0.21
LIMCH1-210ENST00000509454 M0R2C6 588 aa13.73□□□□□ -0.21
LIMCH1-210ENST00000509454 USP2O75604 605 aaPredicted RBP13.73□□□□□ -0.21
LIMCH1-210ENST00000509454 POLR3DP05423 398 aaPredicted RBP13.73□□□□□ -0.21
LIMCH1-210ENST00000509454 HLA-DOAP06340 250 aa13.73□□□□□ -0.21
LIMCH1-210ENST00000509454 SH3BP5LQ7L8J4 393 aa13.73□□□□□ -0.21
LIMCH1-210ENST00000509454 CRACR2BQ8N4Y2 399 aaPredicted RBP13.73□□□□□ -0.21
LIMCH1-210ENST00000509454 SDR42E1Q8WUS8 393 aa13.73□□□□□ -0.21
LIMCH1-210ENST00000509454 OSBP2Q969R2 916 aa13.73□□□□□ -0.21
LIMCH1-210ENST00000509454 CAPNS2Q96L46 248 aa13.73□□□□□ -0.21
LIMCH1-210ENST00000509454 WRNIP1Q96S55 665 aa13.73□□□□□ -0.21
LIMCH1-210ENST00000509454 PALD1Q9ULE6 856 aa13.73□□□□□ -0.21
LIMCH1-210ENST00000509454 CSADQ9Y600 493 aa13.73□□□□□ -0.21
LIMCH1-210ENST00000509454 CDK5RAP2Q96SN8 1893 aa13.72□□□□□ -0.21
LIMCH1-210ENST00000509454 PRKAB2O43741 272 aa13.72□□□□□ -0.21
LIMCH1-210ENST00000509454 APPP05067 770 aa13.72□□□□□ -0.21
LIMCH1-210ENST00000509454 VEGFBP49765 207 aa13.72□□□□□ -0.21
LIMCH1-210ENST00000509454 MKRN3Q13064 507 aaKnown RBP13.72□□□□□ -0.21
LIMCH1-210ENST00000509454 AMOTL1Q8IY63 956 aa13.72□□□□□ -0.21
LIMCH1-210ENST00000509454 KLRG1Q96E93 195 aa13.72□□□□□ -0.21
LIMCH1-210ENST00000509454 SLC10A4Q96EP9 437 aa13.72□□□□□ -0.21
LIMCH1-210ENST00000509454 DHX36Q9H2U1 1008 aaKnown RBP13.72□□□□□ -0.21
LIMCH1-210ENST00000509454 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.72□□□□□ -0.21
LIMCH1-210ENST00000509454 DIAPH3Q9NSV4 1193 aa13.72□□□□□ -0.21
LIMCH1-210ENST00000509454 MCM9Q9NXL9 1143 aa13.72□□□□□ -0.21
LIMCH1-210ENST00000509454 FAM196BA6NMK8 535 aa13.71□□□□□ -0.21
LIMCH1-210ENST00000509454 GPAA1O43292 621 aa13.71□□□□□ -0.21
LIMCH1-210ENST00000509454 MAP3K9P80192 1104 aa13.71□□□□□ -0.21
LIMCH1-210ENST00000509454 ZMYM1Q5SVZ6 1142 aa13.71□□□□□ -0.21
LIMCH1-210ENST00000509454 ANKRD13AQ8IZ07 590 aa13.71□□□□□ -0.21
LIMCH1-210ENST00000509454 CLMNQ96JQ2 1002 aa13.71□□□□□ -0.21
LIMCH1-210ENST00000509454 SEC62Q99442 399 aaKnown RBP13.71□□□□□ -0.21
LIMCH1-210ENST00000509454 ELP3Q9H9T3 547 aa13.71□□□□□ -0.21
LIMCH1-210ENST00000509454 PI4KBQ9UBF8 816 aa13.71□□□□□ -0.21
LIMCH1-210ENST00000509454 WDR33Q9C0J8 1336 aaKnown RBP13.71□□□□□ -0.21
LIMCH1-210ENST00000509454 NAV1Q8NEY1 1877 aa13.71□□□□□ -0.22
LIMCH1-210ENST00000509454 MYH1P12882 1939 aa13.71□□□□□ -0.22
LIMCH1-210ENST00000509454 SLURP2P0DP57 97 aa13.7□□□□□ -0.22
LIMCH1-210ENST00000509454 SDSP20132 328 aa13.7□□□□□ -0.22
LIMCH1-210ENST00000509454 NMIQ13287 307 aaPredicted RBP13.7□□□□□ -0.22
LIMCH1-210ENST00000509454 CCDC129Q6ZRS4 1044 aa13.7□□□□□ -0.22
LIMCH1-210ENST00000509454 TTC6Q86TZ1 520 aa13.7□□□□□ -0.22
LIMCH1-210ENST00000509454 CCDC102AQ96A19 550 aa13.7□□□□□ -0.22
LIMCH1-210ENST00000509454 HHIPL1Q96JK4 782 aa13.7□□□□□ -0.22
LIMCH1-210ENST00000509454 STRBPQ96SI9 672 aaKnown RBP13.7□□□□□ -0.22
LIMCH1-210ENST00000509454 FOCADQ5VW36 1801 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms