RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 CCDC129Q6ZRS4 1044 aa9.85□□□□□ -0.83
LIMCH1-206ENST00000505705 MAPKAPK5Q8IW41 473 aa9.85□□□□□ -0.83
LIMCH1-206ENST00000505705 AMOTL1Q8IY63 956 aa9.85□□□□□ -0.83
LIMCH1-206ENST00000505705 RBM46Q8TBY0 533 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-206ENST00000505705 RIOK1Q9BRS2 568 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-206ENST00000505705 GLIS2Q9BZE0 524 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-206ENST00000505705 PGAP2Q9UHJ9 254 aa9.85□□□□□ -0.83
LIMCH1-206ENST00000505705 RFX7Q2KHR2 1363 aa9.85□□□□□ -0.83
LIMCH1-206ENST00000505705 MYO5AQ9Y4I1 1855 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-206ENST00000505705 DOCK2Q92608 1830 aa9.84□□□□□ -0.83
LIMCH1-206ENST00000505705 MAST2Q6P0Q8 1798 aa9.84□□□□□ -0.83
LIMCH1-206ENST00000505705 A0A0D9SFI3 127 aa9.84□□□□□ -0.83
LIMCH1-206ENST00000505705 PATL2C9JE40 543 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-206ENST00000505705 PRKAB2O43741 272 aa9.84□□□□□ -0.83
LIMCH1-206ENST00000505705 CDC45O75419 566 aa9.84□□□□□ -0.83
LIMCH1-206ENST00000505705 WDHD1O75717 1129 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-206ENST00000505705 POLR3DP05423 398 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-206ENST00000505705 CHMLP26374 656 aa9.84□□□□□ -0.83
LIMCH1-206ENST00000505705 NFIAQ12857 509 aa9.84□□□□□ -0.83
LIMCH1-206ENST00000505705 SDR42E1Q8WUS8 393 aa9.84□□□□□ -0.83
LIMCH1-206ENST00000505705 FAM151AQ8WW52 585 aa9.84□□□□□ -0.83
LIMCH1-206ENST00000505705 STRBPQ96SI9 672 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-206ENST00000505705 IDI2Q9BXS1 227 aa9.84□□□□□ -0.83
LIMCH1-206ENST00000505705 TRIM34Q9BYJ4 488 aa9.84□□□□□ -0.83
LIMCH1-206ENST00000505705 NACAP1Q9BZK3 213 aa9.84□□□□□ -0.83
LIMCH1-206ENST00000505705 TMEM39BQ9GZU3 492 aa9.84□□□□□ -0.83
LIMCH1-206ENST00000505705 SAP30BPQ9UHR5 308 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-206ENST00000505705 PPP2R3BQ9Y5P8 575 aa9.84□□□□□ -0.83
LIMCH1-206ENST00000505705 ADAMTSL1Q8N6G6 1762 aa9.83□□□□□ -0.84
LIMCH1-206ENST00000505705 ENTPD3O75355 529 aa9.83□□□□□ -0.84
LIMCH1-206ENST00000505705 HLA-DOAP06340 250 aa9.83□□□□□ -0.84
LIMCH1-206ENST00000505705 TDO2P48775 406 aa9.83□□□□□ -0.84
LIMCH1-206ENST00000505705 PRKG1Q13976 671 aa9.83□□□□□ -0.84
LIMCH1-206ENST00000505705 TTLL12Q14166 644 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-206ENST00000505705 SLC4A8Q2Y0W8 1093 aa9.83□□□□□ -0.84
LIMCH1-206ENST00000505705 SUPT20HL1Q3ZLR7 823 aa9.83□□□□□ -0.84
LIMCH1-206ENST00000505705 FKBP1CQ5VVH2 108 aa9.83□□□□□ -0.84
LIMCH1-206ENST00000505705 KIAA1211Q6ZU35 1233 aa9.83□□□□□ -0.84
LIMCH1-206ENST00000505705 FAM83AQ86UY5 434 aa9.83□□□□□ -0.84
LIMCH1-206ENST00000505705 HOOK2Q96ED9 719 aa9.83□□□□□ -0.84
LIMCH1-206ENST00000505705 OSBPL5Q9H0X9 879 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-206ENST00000505705 DDX4Q9NQI0 724 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-206ENST00000505705 ATP8A2Q9NTI2 1148 aa9.83□□□□□ -0.84
LIMCH1-206ENST00000505705 MCM9Q9NXL9 1143 aa9.83□□□□□ -0.84
LIMCH1-206ENST00000505705 FAM198AQ9UFP1 575 aa9.83□□□□□ -0.84
LIMCH1-206ENST00000505705 FLT1P17948 1338 aa9.82□□□□□ -0.84
LIMCH1-206ENST00000505705 CCDC171Q6TFL3 1326 aa9.82□□□□□ -0.84
LIMCH1-206ENST00000505705 AK9Q5TCS8 1911 aa9.82□□□□□ -0.84
LIMCH1-206ENST00000505705 TRAF5O00463 557 aa9.82□□□□□ -0.84
LIMCH1-206ENST00000505705 FSTL1Q12841 308 aa9.82□□□□□ -0.84
LIMCH1-206ENST00000505705 DLK2Q6UY11 383 aa9.82□□□□□ -0.84
LIMCH1-206ENST00000505705 TTC6Q86TZ1 520 aa9.82□□□□□ -0.84
LIMCH1-206ENST00000505705 ZFPM1Q8IX07 1006 aa9.82□□□□□ -0.84
LIMCH1-206ENST00000505705 CDCA5Q96FF9 252 aa9.82□□□□□ -0.84
LIMCH1-206ENST00000505705 CSRNP1Q96S65 589 aa9.82□□□□□ -0.84
LIMCH1-206ENST00000505705 NAPBQ9H115 298 aa9.82□□□□□ -0.84
LIMCH1-206ENST00000505705 DHX36Q9H2U1 1008 aaKnown RBP9.82□□□□□ -0.84
LIMCH1-206ENST00000505705 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.82□□□□□ -0.84
LIMCH1-206ENST00000505705 PALD1Q9ULE6 856 aa9.82□□□□□ -0.84
LIMCH1-206ENST00000505705 MYH7P12883 1935 aa9.82□□□□□ -0.84
LIMCH1-206ENST00000505705 RAD50Q92878 1312 aa9.82□□□□□ -0.84
LIMCH1-206ENST00000505705 DDTLA6NHG4 134 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-206ENST00000505705 MINDY4BA8MYZ0 360 aa9.81□□□□□ -0.84
LIMCH1-206ENST00000505705 PPP1R12BO60237 982 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-206ENST00000505705 CELF2O95319 508 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-206ENST00000505705 HSPD1P10809 573 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-206ENST00000505705 NBPF12Q5TAG4 269 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-206ENST00000505705 DCAF15Q66K64 600 aa9.81□□□□□ -0.84
LIMCH1-206ENST00000505705 MIGA2Q7L4E1 593 aa9.81□□□□□ -0.84
LIMCH1-206ENST00000505705 ZNF589Q86UQ0 364 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-206ENST00000505705 IFNL3Q8IZI9 196 aa9.81□□□□□ -0.84
LIMCH1-206ENST00000505705 CRACR2BQ8N4Y2 399 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-206ENST00000505705 DCP1AQ9NPI6 582 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-206ENST00000505705 PI4KBQ9UBF8 816 aa9.81□□□□□ -0.84
LIMCH1-206ENST00000505705 CNTNAP1P78357 1384 aa9.8□□□□□ -0.84
LIMCH1-206ENST00000505705 RPAP1Q9BWH6 1393 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-206ENST00000505705 GSG1L2A8MUP6 293 aa9.8□□□□□ -0.84
LIMCH1-206ENST00000505705 USP17L12C9JPN9 530 aa9.8□□□□□ -0.84
LIMCH1-206ENST00000505705 USP17L21D6R901 530 aa9.8□□□□□ -0.84
LIMCH1-206ENST00000505705 SGSM2O43147 1006 aa9.8□□□□□ -0.84
LIMCH1-206ENST00000505705 ITGBL1O95965 494 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-206ENST00000505705 FMR1Q06787 632 aaKnown RBP eCLIP9.8□□□□□ -0.84
LIMCH1-206ENST00000505705 VPS53Q5VIR6 699 aa9.8□□□□□ -0.84
LIMCH1-206ENST00000505705 GIMAP6Q6P9H5 292 aa9.8□□□□□ -0.84
LIMCH1-206ENST00000505705 ARMC9Q7Z3E5 817 aa9.8□□□□□ -0.84
LIMCH1-206ENST00000505705 STK11IPQ8N1F8 1099 aa9.8□□□□□ -0.84
LIMCH1-206ENST00000505705 C2orf69Q8N8R5 385 aa9.8□□□□□ -0.84
LIMCH1-206ENST00000505705 ESYT1Q9BSJ8 1104 aa9.8□□□□□ -0.84
LIMCH1-206ENST00000505705 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.8□□□□□ -0.84
LIMCH1-206ENST00000505705 ANO2Q9NQ90 1003 aa9.8□□□□□ -0.84
LIMCH1-206ENST00000505705 ARPP21Q9UBL0 812 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-206ENST00000505705 ECM29Q5VYK3 1845 aa9.79□□□□□ -0.84
LIMCH1-206ENST00000505705 SLC3A2P08195 630 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-206ENST00000505705 IREB2P48200 963 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-206ENST00000505705 CTR9Q6PD62 1173 aa9.79□□□□□ -0.84
LIMCH1-206ENST00000505705 SH3BP5LQ7L8J4 393 aa9.79□□□□□ -0.84
LIMCH1-206ENST00000505705 FOXP4Q8IVH2 680 aaPredicted RBP9.79□□□□□ -0.84
LIMCH1-206ENST00000505705 TEPSINQ96N21 525 aa9.79□□□□□ -0.84
LIMCH1-206ENST00000505705 DSCC1Q9BVC3 393 aa9.79□□□□□ -0.84
LIMCH1-206ENST00000505705 GBA2Q9HCG7 927 aaPredicted RBP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms