RNA–Protein interactions for RNA: ENST00000504318.5

PDLIM7-211, Transcript of PDZ and LIM domain 7, humanhuman

TSL 3

Gene PDLIM7, Length 597 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-211ENST00000504318 HOOK2Q96ED9 719 aa17.23■□□□□ 0.35
PDLIM7-211ENST00000504318 OTUD5Q96G74 571 aa17.23■□□□□ 0.35
PDLIM7-211ENST00000504318 CSADQ9Y600 493 aa17.23■□□□□ 0.35
PDLIM7-211ENST00000504318 COL2A1P02458 1487 aaPredicted RBP17.23■□□□□ 0.35
PDLIM7-211ENST00000504318 DOCK1Q14185 1865 aa17.22■□□□□ 0.35
PDLIM7-211ENST00000504318 ZSWIM8A7E2V4 1837 aa17.22■□□□□ 0.35
PDLIM7-211ENST00000504318 CCDC85CA6NKD9 419 aa17.22■□□□□ 0.35
PDLIM7-211ENST00000504318 FKTNO75072 461 aa17.22■□□□□ 0.35
PDLIM7-211ENST00000504318 GTF2A2P52657 109 aa17.22■□□□□ 0.35
PDLIM7-211ENST00000504318 PPIL2Q13356 520 aa17.22■□□□□ 0.35
PDLIM7-211ENST00000504318 RCAN3Q9UKA8 241 aa17.22■□□□□ 0.35
PDLIM7-211ENST00000504318 KCNH4Q9UQ05 1017 aa17.22■□□□□ 0.35
PDLIM7-211ENST00000504318 PPATQ06203 517 aa17.21■□□□□ 0.35
PDLIM7-211ENST00000504318 C20orf194Q5TEA3 1177 aa17.21■□□□□ 0.35
PDLIM7-211ENST00000504318 ADGRA1Q86SQ6 560 aa17.21■□□□□ 0.35
PDLIM7-211ENST00000504318 SLF2Q8IX21 1173 aa17.21■□□□□ 0.35
PDLIM7-211ENST00000504318 SNRKQ9NRH2 765 aa17.21■□□□□ 0.35
PDLIM7-211ENST00000504318 EXOC6BQ9Y2D4 811 aa17.21■□□□□ 0.35
PDLIM7-211ENST00000504318 COG6Q9Y2V7 657 aa17.21■□□□□ 0.35
PDLIM7-211ENST00000504318 CENPFP49454 3210 aa17.21■□□□□ 0.34
PDLIM7-211ENST00000504318 CCL15-CCL14A0A0B4J2E2 113 aa17.2■□□□□ 0.34
PDLIM7-211ENST00000504318 CCL15Q16663 113 aa17.2■□□□□ 0.34
PDLIM7-211ENST00000504318 GORABQ5T7V8 394 aa17.2■□□□□ 0.34
PDLIM7-211ENST00000504318 CCDC8Q9H0W5 538 aaPredicted RBP17.2■□□□□ 0.34
PDLIM7-211ENST00000504318 PIH1D3Q9NQM4 214 aaKnown RBP17.2■□□□□ 0.34
PDLIM7-211ENST00000504318 HPS5Q9UPZ3 1129 aa17.2■□□□□ 0.34
PDLIM7-211ENST00000504318 BTBD19C9JJ37 291 aa17.19■□□□□ 0.34
PDLIM7-211ENST00000504318 ZAP70P43403 619 aa17.19■□□□□ 0.34
PDLIM7-211ENST00000504318 PKN2Q16513 984 aaKnown RBP17.19■□□□□ 0.34
PDLIM7-211ENST00000504318 TTC39AQ5SRH9 613 aa17.19■□□□□ 0.34
PDLIM7-211ENST00000504318 DDX19BQ9UMR2 479 aa17.19■□□□□ 0.34
PDLIM7-211ENST00000504318 BRCA2P51587 3418 aa17.19■□□□□ 0.34
PDLIM7-211ENST00000504318 ATAD5Q96QE3 1844 aa17.19■□□□□ 0.34
PDLIM7-211ENST00000504318 TNRC18O15417 2968 aaPredicted RBP17.18■□□□□ 0.34
PDLIM7-211ENST00000504318 MAP4K4O95819 1239 aaPredicted RBP17.18■□□□□ 0.34
PDLIM7-211ENST00000504318 MS4A1P11836 297 aa17.18■□□□□ 0.34
PDLIM7-211ENST00000504318 OS9Q13438 667 aaPredicted RBP17.18■□□□□ 0.34
PDLIM7-211ENST00000504318 CCDC158Q5M9N0 1113 aa17.18■□□□□ 0.34
PDLIM7-211ENST00000504318 OTOP1Q7RTM1 612 aa17.18■□□□□ 0.34
PDLIM7-211ENST00000504318 ZCCHC17Q9NP64 241 aaKnown RBP17.18■□□□□ 0.34
PDLIM7-211ENST00000504318 ADGRA2Q96PE1 1338 aa17.18■□□□□ 0.34
PDLIM7-211ENST00000504318 TBC1D12O60347 775 aa17.17■□□□□ 0.34
PDLIM7-211ENST00000504318 PPP4CP60510 307 aa17.17■□□□□ 0.34
PDLIM7-211ENST00000504318 GSTO1P78417 241 aa17.17■□□□□ 0.34
PDLIM7-211ENST00000504318 SNAPC2Q13487 334 aa17.17■□□□□ 0.34
PDLIM7-211ENST00000504318 PICALMQ13492 652 aa17.17■□□□□ 0.34
PDLIM7-211ENST00000504318 DDX60LQ5H9U9 1706 aaKnown RBP17.17■□□□□ 0.34
PDLIM7-211ENST00000504318 OTUD7BQ6GQQ9 843 aa17.17■□□□□ 0.34
PDLIM7-211ENST00000504318 FBXO46Q6PJ61 603 aaPredicted RBP17.17■□□□□ 0.34
PDLIM7-211ENST00000504318 RPAP2Q8IXW5 612 aaPredicted RBP17.17■□□□□ 0.34
PDLIM7-211ENST00000504318 RHPN1Q8TCX5 695 aa17.17■□□□□ 0.34
PDLIM7-211ENST00000504318 OSBPL5Q9H0X9 879 aaPredicted RBP17.17■□□□□ 0.34
PDLIM7-211ENST00000504318 RAI14Q9P0K7 980 aa17.17■□□□□ 0.34
PDLIM7-211ENST00000504318 IGSF3O75054 1194 aa17.16■□□□□ 0.34
PDLIM7-211ENST00000504318 LDHCP07864 332 aa17.16■□□□□ 0.34
PDLIM7-211ENST00000504318 CETPP11597 493 aa17.16■□□□□ 0.34
PDLIM7-211ENST00000504318 PTPRAP18433 802 aa17.16■□□□□ 0.34
PDLIM7-211ENST00000504318 RRP1BQ14684 758 aaKnown RBP17.16■□□□□ 0.34
PDLIM7-211ENST00000504318 SCYL3Q8IZE3 742 aa17.16■□□□□ 0.34
PDLIM7-211ENST00000504318 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.16■□□□□ 0.34
PDLIM7-211ENST00000504318 CD99L2Q8TCZ2 262 aa17.16■□□□□ 0.34
PDLIM7-211ENST00000504318 SH3RF3Q8TEJ3 882 aaPredicted RBP17.16■□□□□ 0.34
PDLIM7-211ENST00000504318 ANTXR1Q9H6X2 564 aa17.16■□□□□ 0.34
PDLIM7-211ENST00000504318 LRP2BPQ9P2M1 347 aa17.16■□□□□ 0.34
PDLIM7-211ENST00000504318 NDUFB9Q9Y6M9 179 aa17.16■□□□□ 0.34
PDLIM7-211ENST00000504318 PDE3AQ14432 1141 aa17.15■□□□□ 0.34
PDLIM7-211ENST00000504318 TAF1CQ15572 869 aaPredicted RBP17.15■□□□□ 0.34
PDLIM7-211ENST00000504318 GPAT2Q6NUI2 795 aa17.15■□□□□ 0.34
PDLIM7-211ENST00000504318 ERC1Q8IUD2 1116 aa17.15■□□□□ 0.34
PDLIM7-211ENST00000504318 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.15■□□□□ 0.34
PDLIM7-211ENST00000504318 AFG3L2Q9Y4W6 797 aa17.15■□□□□ 0.34
PDLIM7-211ENST00000504318 LOC285556D6RIA3 1793 aa17.15■□□□□ 0.34
PDLIM7-211ENST00000504318 RBBP6Q7Z6E9 1792 aaKnown RBP17.15■□□□□ 0.34
PDLIM7-211ENST00000504318 FAM196BA6NMK8 535 aa17.14■□□□□ 0.33
PDLIM7-211ENST00000504318 TLR2O60603 784 aa17.14■□□□□ 0.33
PDLIM7-211ENST00000504318 SP3Q02447 781 aa17.14■□□□□ 0.33
PDLIM7-211ENST00000504318 NAA16Q6N069 864 aaPredicted RBP17.14■□□□□ 0.33
PDLIM7-211ENST00000504318 ANKRD23Q86SG2 305 aa17.14■□□□□ 0.33
PDLIM7-211ENST00000504318 AACSQ86V21 672 aa17.14■□□□□ 0.33
PDLIM7-211ENST00000504318 METTL16Q86W50 562 aaKnown RBP17.14■□□□□ 0.33
PDLIM7-211ENST00000504318 DNAJC18Q9H819 358 aa17.14■□□□□ 0.33
PDLIM7-211ENST00000504318 IL1RAPL2Q9NP60 686 aa17.14■□□□□ 0.33
PDLIM7-211ENST00000504318 AATFQ9NY61 560 aaKnown RBP eCLIP17.14■□□□□ 0.33
PDLIM7-211ENST00000504318 A0A0G2JLL6 359 aaPredicted RBP17.13■□□□□ 0.33
PDLIM7-211ENST00000504318 CTNND1O60716 968 aaKnown RBP17.13■□□□□ 0.33
PDLIM7-211ENST00000504318 PRRT2Q7Z6L0 340 aaPredicted RBP17.13■□□□□ 0.33
PDLIM7-211ENST00000504318 TEX11Q8IYF3 940 aa17.13■□□□□ 0.33
PDLIM7-211ENST00000504318 ERO1AQ96HE7 468 aa17.13■□□□□ 0.33
PDLIM7-211ENST00000504318 ZFYVE28Q9HCC9 887 aa17.13■□□□□ 0.33
PDLIM7-211ENST00000504318 TRIM17Q9Y577 477 aa17.13■□□□□ 0.33
PDLIM7-211ENST00000504318 MYH1P12882 1939 aa17.13■□□□□ 0.33
PDLIM7-211ENST00000504318 CXCL11O14625 94 aa17.12■□□□□ 0.33
PDLIM7-211ENST00000504318 CTGFP29279 349 aa17.12■□□□□ 0.33
PDLIM7-211ENST00000504318 C17orf99Q6UX52 265 aa17.12■□□□□ 0.33
PDLIM7-211ENST00000504318 PTPN22Q9Y2R2 807 aa17.12■□□□□ 0.33
PDLIM7-211ENST00000504318 FLT1P17948 1338 aa17.12■□□□□ 0.33
PDLIM7-211ENST00000504318 MKI67P46013 3256 aaKnown RBP17.11■□□□□ 0.33
PDLIM7-211ENST00000504318 SOX10P56693 466 aa17.11■□□□□ 0.33
PDLIM7-211ENST00000504318 DYNLL1P63167 89 aaKnown RBP17.11■□□□□ 0.33
PDLIM7-211ENST00000504318 HSP90AB4PQ58FF6 505 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms