RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 FKBP1AP62942 108 aaKnown RBP9.74□□□□□ -0.85
USP54-215ENST00000497106 CCDC73Q6ZRK6 1079 aa9.74□□□□□ -0.85
USP54-215ENST00000497106 GTF3C6Q969F1 213 aa9.74□□□□□ -0.85
USP54-215ENST00000497106 PDE4CQ08493 712 aa9.74□□□□□ -0.85
USP54-215ENST00000497106 APOBRQ0VD83 1088 aa9.74□□□□□ -0.85
USP54-215ENST00000497106 NSUN4Q96CB9 384 aaKnown RBP9.74□□□□□ -0.85
USP54-215ENST00000497106 SEC63Q9UGP8 760 aaKnown RBP9.74□□□□□ -0.85
USP54-215ENST00000497106 DDAH1O94760 285 aa9.74□□□□□ -0.85
USP54-215ENST00000497106 STRIP1Q5VSL9 837 aa9.74□□□□□ -0.85
USP54-215ENST00000497106 MICU3Q86XE3 530 aa9.74□□□□□ -0.85
USP54-215ENST00000497106 STK11IPQ8N1F8 1099 aa9.74□□□□□ -0.85
USP54-215ENST00000497106 DHX36Q9H2U1 1008 aaKnown RBP9.74□□□□□ -0.85
USP54-215ENST00000497106 KLRG2A4D1S0 409 aaPredicted RBP9.73□□□□□ -0.85
USP54-215ENST00000497106 CCT2P78371 535 aaKnown RBP9.73□□□□□ -0.85
USP54-215ENST00000497106 HDLBPQ00341 1268 aaKnown RBP9.73□□□□□ -0.85
USP54-215ENST00000497106 USP40Q9NVE5 1235 aa9.73□□□□□ -0.85
USP54-215ENST00000497106 JAG2Q9Y219 1238 aa9.73□□□□□ -0.85
USP54-215ENST00000497106 USP17L12C9JPN9 530 aa9.73□□□□□ -0.85
USP54-215ENST00000497106 USP17L21D6R901 530 aa9.73□□□□□ -0.85
USP54-215ENST00000497106 MPHOSPH10O00566 681 aaKnown RBP9.73□□□□□ -0.85
USP54-215ENST00000497106 TRAK2O60296 914 aa9.73□□□□□ -0.85
USP54-215ENST00000497106 TNFAIP1Q13829 316 aa9.73□□□□□ -0.85
USP54-215ENST00000497106 DOK7Q18PE1 504 aa9.73□□□□□ -0.85
USP54-215ENST00000497106 BICD2Q8TD16 824 aa9.73□□□□□ -0.85
USP54-215ENST00000497106 TAOK3Q9H2K8 898 aa9.73□□□□□ -0.85
USP54-215ENST00000497106 FAM205AQ6ZU69 1335 aa9.73□□□□□ -0.85
USP54-215ENST00000497106 GOLGA6L3A6NEY3 463 aa9.73□□□□□ -0.85
USP54-215ENST00000497106 PICALMQ13492 652 aa9.73□□□□□ -0.85
USP54-215ENST00000497106 DLGAP5Q15398 846 aa9.73□□□□□ -0.85
USP54-215ENST00000497106 SBK1Q52WX2 424 aa9.73□□□□□ -0.85
USP54-215ENST00000497106 CCDC148Q8NFR7 591 aa9.73□□□□□ -0.85
USP54-215ENST00000497106 TGFBRAP1Q8WUH2 860 aa9.73□□□□□ -0.85
USP54-215ENST00000497106 TTC14Q96N46 770 aa9.73□□□□□ -0.85
USP54-215ENST00000497106 COL5A3P25940 1745 aaPredicted RBP9.73□□□□□ -0.85
USP54-215ENST00000497106 PTPDC1A2A3K4 754 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 ECE2O60344 883 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 F13A1P00488 732 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 LIFRP42702 1097 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 STK38Q15208 465 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 DEFB132Q7Z7B7 95 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 DDX11Q96FC9 970 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 KIF2CQ99661 725 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 SH2D4AQ9H788 454 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 PPP4CP60510 307 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 CTDSPL2Q05D32 466 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 BRAPQ7Z569 592 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 NECAB1Q8N987 351 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 CCDC17Q96LX7 622 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 BMP15O95972 392 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 ADCK5Q3MIX3 580 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 HHIPL2Q6UWX4 724 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 PROM2Q8N271 834 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 TCEANC2Q96MN5 208 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 ZSCAN10Q96SZ4 725 aaPredicted RBP9.72□□□□□ -0.85
USP54-215ENST00000497106 LRRC2Q9BYS8 371 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 BCS1LQ9Y276 419 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 BCORQ6W2J9 1755 aa9.72□□□□□ -0.85
USP54-215ENST00000497106 SNAP23O00161 211 aa9.71□□□□□ -0.85
USP54-215ENST00000497106 BAG4O95429 457 aaKnown RBP9.71□□□□□ -0.85
USP54-215ENST00000497106 SDR42E1Q8WUS8 393 aa9.71□□□□□ -0.85
USP54-215ENST00000497106 SPATA32Q96LK8 384 aa9.71□□□□□ -0.85
USP54-215ENST00000497106 PRDX5P30044 214 aa9.71□□□□□ -0.85
USP54-215ENST00000497106 TPM4P67936 248 aa9.71□□□□□ -0.85
USP54-215ENST00000497106 ME3Q16798 604 aa9.71□□□□□ -0.85
USP54-215ENST00000497106 MAPKAPK5Q8IW41 473 aa9.71□□□□□ -0.85
USP54-215ENST00000497106 SPON1Q9HCB6 807 aa9.71□□□□□ -0.85
USP54-215ENST00000497106 ANAPC4Q9UJX5 808 aa9.71□□□□□ -0.85
USP54-215ENST00000497106 CD2APQ9Y5K6 639 aa9.71□□□□□ -0.85
USP54-215ENST00000497106 GSG1L2A8MUP6 293 aa9.71□□□□□ -0.86
USP54-215ENST00000497106 ORC4O43929 436 aa9.71□□□□□ -0.86
USP54-215ENST00000497106 DEXIO95424 95 aa9.71□□□□□ -0.86
USP54-215ENST00000497106 CPA1P15085 419 aa9.71□□□□□ -0.86
USP54-215ENST00000497106 DYNLL1P63167 89 aaKnown RBP9.71□□□□□ -0.86
USP54-215ENST00000497106 ATF5Q9Y2D1 282 aaPredicted RBP9.71□□□□□ -0.86
USP54-215ENST00000497106 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.71□□□□□ -0.86
USP54-215ENST00000497106 SH2B2O14492 632 aaPredicted RBP9.71□□□□□ -0.86
USP54-215ENST00000497106 C21orf2O43822 256 aa9.71□□□□□ -0.86
USP54-215ENST00000497106 RAD21O60216 631 aa9.71□□□□□ -0.86
USP54-215ENST00000497106 PRPF40AO75400 957 aaKnown RBP9.71□□□□□ -0.86
USP54-215ENST00000497106 CALML3P27482 149 aa9.71□□□□□ -0.86
USP54-215ENST00000497106 LMOD1P29536 600 aaPredicted RBP9.71□□□□□ -0.86
USP54-215ENST00000497106 ATP2B2Q01814 1243 aa9.71□□□□□ -0.86
USP54-215ENST00000497106 RGS22Q8NE09 1264 aa9.71□□□□□ -0.86
USP54-215ENST00000497106 ALG1Q9BT22 464 aa9.71□□□□□ -0.86
USP54-215ENST00000497106 SLC26A6Q9BXS9 759 aa9.71□□□□□ -0.86
USP54-215ENST00000497106 AK9Q5TCS8 1911 aa9.71□□□□□ -0.86
USP54-215ENST00000497106 IKQ13123 557 aaPredicted RBP9.7□□□□□ -0.86
USP54-215ENST00000497106 MB21D2Q8IYB1 491 aaPredicted RBP9.7□□□□□ -0.86
USP54-215ENST00000497106 DBNDD1Q9H9R9 158 aa9.7□□□□□ -0.86
USP54-215ENST00000497106 TPCN1Q9ULQ1 816 aa9.7□□□□□ -0.86
USP54-215ENST00000497106 TCRBV5S4A2TA0A5A2 114 aa9.7□□□□□ -0.86
USP54-215ENST00000497106 GOLGA6L6A8MZA4 724 aa9.7□□□□□ -0.86
USP54-215ENST00000497106 FIBPO43427 364 aa9.7□□□□□ -0.86
USP54-215ENST00000497106 GSE1Q14687 1217 aa9.7□□□□□ -0.86
USP54-215ENST00000497106 CIAPIN1Q6FI81 312 aa9.7□□□□□ -0.86
USP54-215ENST00000497106 STX8Q9UNK0 236 aa9.7□□□□□ -0.86
USP54-215ENST00000497106 MYH3P11055 1940 aa9.7□□□□□ -0.86
USP54-215ENST00000497106 LY75O60449 1722 aa9.7□□□□□ -0.86
USP54-215ENST00000497106 ZBTB7AO95365 584 aa9.7□□□□□ -0.86
USP54-215ENST00000497106 CHRNA5P30532 468 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms