RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 PCDHA4Q9UN74 947 aa10□□□□□ -0.81
SF3B1-212ENST00000496458 WDR64B1ANS9 1081 aa9.99□□□□□ -0.81
SF3B1-212ENST00000496458 HCLS1P14317 486 aaPredicted RBP9.99□□□□□ -0.81
SF3B1-212ENST00000496458 CSADQ9Y600 493 aa9.99□□□□□ -0.81
SF3B1-212ENST00000496458 DCDC2CA8MYV0 355 aa9.98□□□□□ -0.81
SF3B1-212ENST00000496458 DYNC1LI2O43237 492 aaPredicted RBP9.98□□□□□ -0.81
SF3B1-212ENST00000496458 RNGTTO60942 597 aaKnown RBP9.98□□□□□ -0.81
SF3B1-212ENST00000496458 F13BP05160 661 aa9.98□□□□□ -0.81
SF3B1-212ENST00000496458 ADMP35318 185 aa9.98□□□□□ -0.81
SF3B1-212ENST00000496458 LIG3P49916 1009 aa9.98□□□□□ -0.81
SF3B1-212ENST00000496458 SHISA5Q8N114 240 aa9.98□□□□□ -0.81
SF3B1-212ENST00000496458 ST13P50502 369 aaKnown RBP9.97□□□□□ -0.81
SF3B1-212ENST00000496458 ERVK-24P63145 666 aa9.97□□□□□ -0.81
SF3B1-212ENST00000496458 SMYD4Q8IYR2 804 aaPredicted RBP9.97□□□□□ -0.81
SF3B1-212ENST00000496458 Q8N3U1 123 aa9.97□□□□□ -0.81
SF3B1-212ENST00000496458 GIMAP7Q8NHV1 300 aa9.97□□□□□ -0.81
SF3B1-212ENST00000496458 GAL3ST3Q96A11 431 aa9.97□□□□□ -0.81
SF3B1-212ENST00000496458 USP31Q70CQ4 1352 aa9.97□□□□□ -0.81
SF3B1-212ENST00000496458 NEFMP07197 916 aa9.96□□□□□ -0.82
SF3B1-212ENST00000496458 LMNB1P20700 586 aa9.96□□□□□ -0.82
SF3B1-212ENST00000496458 ITGAEP38570 1179 aa9.96□□□□□ -0.82
SF3B1-212ENST00000496458 PTPN11Q06124 597 aaPredicted RBP9.96□□□□□ -0.82
SF3B1-212ENST00000496458 SCARA3Q6AZY7 606 aa9.96□□□□□ -0.82
SF3B1-212ENST00000496458 ZAR1Q86SH2 424 aa9.96□□□□□ -0.82
SF3B1-212ENST00000496458 PICK1Q9NRD5 415 aa9.96□□□□□ -0.82
SF3B1-212ENST00000496458 ATG3Q9NT62 314 aa9.96□□□□□ -0.82
SF3B1-212ENST00000496458 PRR19A6NJB7 356 aa9.95□□□□□ -0.82
SF3B1-212ENST00000496458 RPS26P62854 115 aaKnown RBP9.95□□□□□ -0.82
SF3B1-212ENST00000496458 LRP8Q14114 963 aa9.95□□□□□ -0.82
SF3B1-212ENST00000496458 PPM1JQ5JR12 505 aa9.95□□□□□ -0.82
SF3B1-212ENST00000496458 SEZ6L2Q6UXD5 910 aa9.95□□□□□ -0.82
SF3B1-212ENST00000496458 C12orf40Q86WS4 652 aa9.95□□□□□ -0.82
SF3B1-212ENST00000496458 RNF214Q8ND24 703 aa9.95□□□□□ -0.82
SF3B1-212ENST00000496458 GATA6Q92908 595 aa9.95□□□□□ -0.82
SF3B1-212ENST00000496458 ELMO3Q96BJ8 720 aa9.95□□□□□ -0.82
SF3B1-212ENST00000496458 NOC4LQ9BVI4 516 aaKnown RBP9.95□□□□□ -0.82
SF3B1-212ENST00000496458 OSBPL1AQ9BXW6 950 aa9.95□□□□□ -0.82
SF3B1-212ENST00000496458 C1GALT1Q9NS00 363 aa9.95□□□□□ -0.82
SF3B1-212ENST00000496458 PCDHB5Q9Y5E4 795 aa9.95□□□□□ -0.82
SF3B1-212ENST00000496458 LOC100996750A0A140TA64 210 aa9.94□□□□□ -0.82
SF3B1-212ENST00000496458 SSTR4P31391 388 aa9.94□□□□□ -0.82
SF3B1-212ENST00000496458 SEPT6Q14141 434 aa9.94□□□□□ -0.82
SF3B1-212ENST00000496458 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.94□□□□□ -0.82
SF3B1-212ENST00000496458 AGMOQ6ZNB7 445 aa9.94□□□□□ -0.82
SF3B1-212ENST00000496458 ISL2Q96A47 359 aa9.94□□□□□ -0.82
SF3B1-212ENST00000496458 KRTAP4-6Q9BYQ5 205 aa9.94□□□□□ -0.82
SF3B1-212ENST00000496458 SSU72Q9NP77 194 aaKnown RBP9.94□□□□□ -0.82
SF3B1-212ENST00000496458 FAM170BA6NMN3 283 aa9.93□□□□□ -0.82
SF3B1-212ENST00000496458 F6X3S4 739 aa9.93□□□□□ -0.82
SF3B1-212ENST00000496458 ZNF16P17020 682 aaPredicted RBP9.93□□□□□ -0.82
SF3B1-212ENST00000496458 CDK5R2Q13319 367 aa9.93□□□□□ -0.82
SF3B1-212ENST00000496458 INPP5AQ14642 412 aa9.93□□□□□ -0.82
SF3B1-212ENST00000496458 ARTNQ5T4W7 220 aa9.93□□□□□ -0.82
SF3B1-212ENST00000496458 LRFN4Q6PJG9 635 aa9.93□□□□□ -0.82
SF3B1-212ENST00000496458 COBLO75128 1261 aa9.92□□□□□ -0.82
SF3B1-212ENST00000496458 RLBP1P12271 317 aa9.92□□□□□ -0.82
SF3B1-212ENST00000496458 PLPPR2Q96GM1 343 aa9.92□□□□□ -0.82
SF3B1-212ENST00000496458 METTL22Q9BUU2 404 aaPredicted RBP9.92□□□□□ -0.82
SF3B1-212ENST00000496458 BCL11AQ9H165 835 aa9.92□□□□□ -0.82
SF3B1-212ENST00000496458 ZFP64Q9NPA5 681 aa9.92□□□□□ -0.82
SF3B1-212ENST00000496458 PIM2Q9P1W9 311 aa9.92□□□□□ -0.82
SF3B1-212ENST00000496458 PCOLCE2Q9UKZ9 415 aa9.92□□□□□ -0.82
SF3B1-212ENST00000496458 TLR6Q9Y2C9 796 aa9.92□□□□□ -0.82
SF3B1-212ENST00000496458 LEMD3Q9Y2U8 911 aa9.92□□□□□ -0.82
SF3B1-212ENST00000496458 PRAMEF27A3QJZ7 478 aa9.91□□□□□ -0.82
SF3B1-212ENST00000496458 HYAL3O43820 417 aaPredicted RBP9.91□□□□□ -0.82
SF3B1-212ENST00000496458 TFE3P19532 575 aaPredicted RBP9.91□□□□□ -0.82
SF3B1-212ENST00000496458 GRIK1P39086 918 aa9.91□□□□□ -0.82
SF3B1-212ENST00000496458 MRPL58Q14197 206 aaKnown RBP9.91□□□□□ -0.82
SF3B1-212ENST00000496458 WIPI1Q5MNZ9 446 aaPredicted RBP9.91□□□□□ -0.82
SF3B1-212ENST00000496458 ZNF765Q7L2R6 523 aa9.91□□□□□ -0.82
SF3B1-212ENST00000496458 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.91□□□□□ -0.82
SF3B1-212ENST00000496458 MIR1-1HGQ9H1L0 117 aa9.91□□□□□ -0.82
SF3B1-212ENST00000496458 MED26O95402 600 aa9.9□□□□□ -0.82
SF3B1-212ENST00000496458 NTF4P34130 210 aa9.9□□□□□ -0.82
SF3B1-212ENST00000496458 CD97P48960 835 aa9.9□□□□□ -0.82
SF3B1-212ENST00000496458 CDK8P49336 464 aa9.9□□□□□ -0.82
SF3B1-212ENST00000496458 RING1Q06587 406 aa9.9□□□□□ -0.82
SF3B1-212ENST00000496458 ZBTB37Q5TC79 503 aa9.9□□□□□ -0.82
SF3B1-212ENST00000496458 PCMTD2Q9NV79 361 aa9.9□□□□□ -0.82
SF3B1-212ENST00000496458 FANCGO15287 622 aa9.89□□□□□ -0.83
SF3B1-212ENST00000496458 HOXA10P31260 410 aaPredicted RBP9.89□□□□□ -0.83
SF3B1-212ENST00000496458 CPSF6Q16630 551 aaKnown RBP eCLIP9.89□□□□□ -0.83
SF3B1-212ENST00000496458 HDXQ7Z353 690 aa9.89□□□□□ -0.83
SF3B1-212ENST00000496458 UBE3DQ7Z6J8 389 aa9.89□□□□□ -0.83
SF3B1-212ENST00000496458 PHC3Q8NDX5 983 aa9.89□□□□□ -0.83
SF3B1-212ENST00000496458 FAM87AP0C7U9 286 aa9.88□□□□□ -0.83
SF3B1-212ENST00000496458 CYP27A1Q02318 531 aa9.88□□□□□ -0.83
SF3B1-212ENST00000496458 DUSP27Q5VZP5 1158 aa9.88□□□□□ -0.83
SF3B1-212ENST00000496458 INTS5Q6P9B9 1019 aaKnown RBP9.88□□□□□ -0.83
SF3B1-212ENST00000496458 OGFOD3Q6PK18 319 aa9.87□□□□□ -0.83
SF3B1-212ENST00000496458 CDC37L1Q7L3B6 337 aa9.87□□□□□ -0.83
SF3B1-212ENST00000496458 CYFIP1Q7L576 1253 aa9.87□□□□□ -0.83
SF3B1-212ENST00000496458 JARID2Q92833 1246 aaPredicted RBP9.87□□□□□ -0.83
SF3B1-212ENST00000496458 SNCAIPQ9Y6H5 919 aa9.87□□□□□ -0.83
SF3B1-212ENST00000496458 CYP26A1O43174 497 aa9.86□□□□□ -0.83
SF3B1-212ENST00000496458 FOSL1P15407 271 aa9.86□□□□□ -0.83
SF3B1-212ENST00000496458 LRRC4CQ9HCJ2 640 aa9.86□□□□□ -0.83
SF3B1-212ENST00000496458 KIAA1324LA8MWY0 1029 aaPredicted RBP9.85□□□□□ -0.83
SF3B1-212ENST00000496458 GBP2P32456 591 aaPredicted RBP9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms