RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 TDO2P48775 406 aa19.14■□□□□ 0.65
CCDC88B-210ENST00000494566 IFNKQ9P0W0 207 aa19.14■□□□□ 0.65
CCDC88B-210ENST00000494566 SPATA31A1Q5TZJ5 1347 aa19.14■□□□□ 0.65
CCDC88B-210ENST00000494566 GOLGA8AA7E2F4 631 aa19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 SMTNL1A8MU46 457 aa19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 GSG1L2A8MUP6 293 aa19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 ZBTB43O43298 467 aa19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 WDHD1O75717 1129 aaPredicted RBP19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 KRT40Q6A162 431 aa19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 ADALQ6DHV7 355 aa19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 ADGRA1Q86SQ6 560 aa19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 VPS37DQ86XT2 251 aa19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 SDR42E1Q8WUS8 393 aa19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 LRP2BPQ9P2M1 347 aa19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 SLC4A4Q9Y6R1 1079 aa19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 MROH7-TTC4A0A0A0MT08 1334 aa19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 C4AP0C0L4 1744 aa19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 C4BP0C0L5 1744 aa19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 PATL2C9JE40 543 aaKnown RBP19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 NTSR2O95665 410 aa19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 IGHMBP2P38935 993 aaKnown RBP19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 GNL2Q13823 731 aaKnown RBP19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 SLC26A6Q9BXS9 759 aa19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 ATRNO75882 1429 aa19.13■□□□□ 0.65
CCDC88B-210ENST00000494566 GUCY1A2P33402 732 aa19.12■□□□□ 0.65
CCDC88B-210ENST00000494566 CCDC152Q4G0S7 254 aa19.12■□□□□ 0.65
CCDC88B-210ENST00000494566 SPECC1Q5M775 1068 aa19.12■□□□□ 0.65
CCDC88B-210ENST00000494566 FAM217BQ9NTX9 383 aaPredicted RBP19.12■□□□□ 0.65
CCDC88B-210ENST00000494566 CTIFO43310 598 aaKnown RBP19.12■□□□□ 0.65
CCDC88B-210ENST00000494566 ANO1Q5XXA6 986 aa19.12■□□□□ 0.65
CCDC88B-210ENST00000494566 PTF1AQ7RTS3 328 aa19.12■□□□□ 0.65
CCDC88B-210ENST00000494566 GOLGB1Q14789 3259 aaKnown RBP19.12■□□□□ 0.65
CCDC88B-210ENST00000494566 XPO4Q9C0E2 1151 aaKnown RBP19.11■□□□□ 0.65
CCDC88B-210ENST00000494566 ERICH4A6NGS2 130 aa19.11■□□□□ 0.65
CCDC88B-210ENST00000494566 CLIC6Q96NY7 704 aa19.11■□□□□ 0.65
CCDC88B-210ENST00000494566 DDX60Q8IY21 1712 aaKnown RBP19.11■□□□□ 0.65
CCDC88B-210ENST00000494566 MINDY4BA8MYZ0 360 aa19.11■□□□□ 0.65
CCDC88B-210ENST00000494566 ATP1A3P13637 1013 aa19.11■□□□□ 0.65
CCDC88B-210ENST00000494566 ERFEQ4G0M1 354 aa19.11■□□□□ 0.65
CCDC88B-210ENST00000494566 ATL3Q6DD88 541 aa19.11■□□□□ 0.65
CCDC88B-210ENST00000494566 SYT10Q6XYQ8 523 aa19.11■□□□□ 0.65
CCDC88B-210ENST00000494566 CTAGE5O15320 804 aa19.1■□□□□ 0.65
CCDC88B-210ENST00000494566 IARSP41252 1262 aaKnown RBP19.1■□□□□ 0.65
CCDC88B-210ENST00000494566 POLR3EQ9NVU0 708 aa19.1■□□□□ 0.65
CCDC88B-210ENST00000494566 PIP4K2BP78356 416 aa19.1■□□□□ 0.65
CCDC88B-210ENST00000494566 NTRK3Q16288 839 aa19.1■□□□□ 0.65
CCDC88B-210ENST00000494566 KCNG4Q8TDN1 519 aa19.1■□□□□ 0.65
CCDC88B-210ENST00000494566 KCNJ14Q9UNX9 436 aa19.1■□□□□ 0.65
CCDC88B-210ENST00000494566 SLC12A7Q9Y666 1083 aa19.1■□□□□ 0.65
CCDC88B-210ENST00000494566 PFKFB1P16118 471 aa19.09■□□□□ 0.65
CCDC88B-210ENST00000494566 CCZ1BP86790 482 aa19.09■□□□□ 0.65
CCDC88B-210ENST00000494566 CCZ1P86791 482 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-210ENST00000494566 MFSD6Q6ZSS7 791 aa19.09■□□□□ 0.65
CCDC88B-210ENST00000494566 CEP57L1Q8IYX8 460 aa19.09■□□□□ 0.65
CCDC88B-210ENST00000494566 CYP2D7A0A087X1C5 515 aa19.09■□□□□ 0.65
CCDC88B-210ENST00000494566 ZNF202O95125 648 aa19.09■□□□□ 0.65
CCDC88B-210ENST00000494566 CYP7A1P22680 504 aa19.09■□□□□ 0.65
CCDC88B-210ENST00000494566 KMT5BQ4FZB7 885 aa19.09■□□□□ 0.65
CCDC88B-210ENST00000494566 AXDND1Q5T1B0 1012 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-210ENST00000494566 AKNAD1Q5T1N1 836 aa19.09■□□□□ 0.65
CCDC88B-210ENST00000494566 BRAPQ7Z569 592 aa19.09■□□□□ 0.65
CCDC88B-210ENST00000494566 NUP133Q8WUM0 1156 aa19.09■□□□□ 0.65
CCDC88B-210ENST00000494566 ATP2B1P20020 1258 aa19.08■□□□□ 0.65
CCDC88B-210ENST00000494566 CHMP4CQ96CF2 233 aa19.08■□□□□ 0.65
CCDC88B-210ENST00000494566 EPC1Q9H2F5 836 aa19.08■□□□□ 0.65
CCDC88B-210ENST00000494566 ANO10Q9NW15 660 aa19.08■□□□□ 0.65
CCDC88B-210ENST00000494566 RAI14Q9P0K7 980 aa19.08■□□□□ 0.65
CCDC88B-210ENST00000494566 YEATS4O95619 227 aa19.08■□□□□ 0.64
CCDC88B-210ENST00000494566 KLHL34Q8N239 644 aa19.08■□□□□ 0.64
CCDC88B-210ENST00000494566 LRP5O75197 1615 aa19.08■□□□□ 0.64
CCDC88B-210ENST00000494566 WDR19Q8NEZ3 1342 aa19.08■□□□□ 0.64
CCDC88B-210ENST00000494566 EP400Q96L91 3159 aa19.08■□□□□ 0.64
CCDC88B-210ENST00000494566 EVX2Q03828 476 aa19.07■□□□□ 0.64
CCDC88B-210ENST00000494566 FAM98CQ17RN3 349 aaKnown RBP19.07■□□□□ 0.64
CCDC88B-210ENST00000494566 ERCC6LQ2NKX8 1250 aa19.07■□□□□ 0.64
CCDC88B-210ENST00000494566 HOMER1Q86YM7 354 aa19.07■□□□□ 0.64
CCDC88B-210ENST00000494566 TMEM87BQ96K49 555 aa19.07■□□□□ 0.64
CCDC88B-210ENST00000494566 JAG2Q9Y219 1238 aa19.07■□□□□ 0.64
CCDC88B-210ENST00000494566 hCG_1642624A0A1W2PR95 340 aa19.07■□□□□ 0.64
CCDC88B-210ENST00000494566 FAM182BQ5T319 152 aa19.07■□□□□ 0.64
CCDC88B-210ENST00000494566 KIAA1468Q9P260 1216 aa19.07■□□□□ 0.64
CCDC88B-210ENST00000494566 KLRK1P26718 216 aa19.07■□□□□ 0.64
CCDC88B-210ENST00000494566 DYNLL1P63167 89 aaKnown RBP19.07■□□□□ 0.64
CCDC88B-210ENST00000494566 FBXO38Q6PIJ6 1188 aa19.07■□□□□ 0.64
CCDC88B-210ENST00000494566 NBPF11Q86T75 865 aa19.07■□□□□ 0.64
CCDC88B-210ENST00000494566 SLC51AQ86UW1 340 aa19.07■□□□□ 0.64
CCDC88B-210ENST00000494566 LINC00116Q8NCU8 138 aa19.07■□□□□ 0.64
CCDC88B-210ENST00000494566 A0A1W2PQ27 194 aa19.06■□□□□ 0.64
CCDC88B-210ENST00000494566 A0A1W2PQ64 194 aa19.06■□□□□ 0.64
CCDC88B-210ENST00000494566 A0A1W2PQD8 194 aa19.06■□□□□ 0.64
CCDC88B-210ENST00000494566 PRDM1O75626 825 aa19.06■□□□□ 0.64
CCDC88B-210ENST00000494566 PARP10Q53GL7 1025 aa19.06■□□□□ 0.64
CCDC88B-210ENST00000494566 CPLX2Q6PUV4 134 aaKnown RBP19.06■□□□□ 0.64
CCDC88B-210ENST00000494566 CHD4Q14839 1912 aa19.06■□□□□ 0.64
CCDC88B-210ENST00000494566 PLCH1Q4KWH8 1693 aa19.06■□□□□ 0.64
CCDC88B-210ENST00000494566 BTBD18B2RXH4 712 aa19.06■□□□□ 0.64
CCDC88B-210ENST00000494566 SLC4A8Q2Y0W8 1093 aa19.06■□□□□ 0.64
CCDC88B-210ENST00000494566 TRERF1Q96PN7 1200 aa19.06■□□□□ 0.64
CCDC88B-210ENST00000494566 PHLPP1O60346 1717 aa19.05■□□□□ 0.64
CCDC88B-210ENST00000494566 ZBTB22O15209 634 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms