RNA–Protein interactions for RNA: ENST00000492512.1

GPNMB-213, Transcript of glycoprotein nmb, humanhuman

TSL 3

Gene GPNMB, Length 447 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-213ENST00000492512 PRDX5P30044 214 aa17.16■□□□□ 0.34
GPNMB-213ENST00000492512 PRRT2Q7Z6L0 340 aaPredicted RBP17.16■□□□□ 0.34
GPNMB-213ENST00000492512 SCYL3Q8IZE3 742 aa17.16■□□□□ 0.34
GPNMB-213ENST00000492512 MYH2Q9UKX2 1941 aa17.15■□□□□ 0.34
GPNMB-213ENST00000492512 EYA2O00167 538 aa17.15■□□□□ 0.34
GPNMB-213ENST00000492512 ZFPM1Q8IX07 1006 aa17.15■□□□□ 0.34
GPNMB-213ENST00000492512 PXYLP1Q8TE99 480 aa17.15■□□□□ 0.34
GPNMB-213ENST00000492512 SMCR8Q8TEV9 937 aaPredicted RBP17.15■□□□□ 0.34
GPNMB-213ENST00000492512 DEFB118Q96PH6 123 aa17.15■□□□□ 0.34
GPNMB-213ENST00000492512 ALPK3Q96L96 1907 aa17.14■□□□□ 0.33
GPNMB-213ENST00000492512 PHF20L1A8MW92 1017 aa17.14■□□□□ 0.33
GPNMB-213ENST00000492512 PTPRAP18433 802 aa17.14■□□□□ 0.33
GPNMB-213ENST00000492512 GNL3LQ9NVN8 582 aaKnown RBP17.14■□□□□ 0.33
GPNMB-213ENST00000492512 STAP2Q9UGK3 403 aa17.14■□□□□ 0.33
GPNMB-213ENST00000492512 TAOK2Q9UL54 1235 aa17.14■□□□□ 0.33
GPNMB-213ENST00000492512 SLC45A1Q9Y2W3 748 aa17.14■□□□□ 0.33
GPNMB-213ENST00000492512 SOX1O00570 391 aaPredicted RBP17.13■□□□□ 0.33
GPNMB-213ENST00000492512 RGS3P49796 1198 aa17.13■□□□□ 0.33
GPNMB-213ENST00000492512 IRF5Q13568 498 aa17.13■□□□□ 0.33
GPNMB-213ENST00000492512 ZSCAN29Q8IWY8 852 aaPredicted RBP17.13■□□□□ 0.33
GPNMB-213ENST00000492512 LRCH3Q96II8 777 aa17.13■□□□□ 0.33
GPNMB-213ENST00000492512 AFG3L2Q9Y4W6 797 aa17.13■□□□□ 0.33
GPNMB-213ENST00000492512 LRRFIP2Q9Y608 721 aaKnown RBP17.13■□□□□ 0.33
GPNMB-213ENST00000492512 DOCK1Q14185 1865 aa17.13■□□□□ 0.33
GPNMB-213ENST00000492512 ATRNL1Q5VV63 1379 aa17.13■□□□□ 0.33
GPNMB-213ENST00000492512 PHIPQ8WWQ0 1821 aa17.12■□□□□ 0.33
GPNMB-213ENST00000492512 ENTPD3O75355 529 aa17.12■□□□□ 0.33
GPNMB-213ENST00000492512 COA7Q96BR5 231 aa17.12■□□□□ 0.33
GPNMB-213ENST00000492512 PAWRQ96IZ0 340 aaKnown RBP17.12■□□□□ 0.33
GPNMB-213ENST00000492512 USP44Q9H0E7 712 aa17.12■□□□□ 0.33
GPNMB-213ENST00000492512 PAK6Q9NQU5 681 aaPredicted RBP17.12■□□□□ 0.33
GPNMB-213ENST00000492512 TRIM75PA6NK02 468 aa17.11■□□□□ 0.33
GPNMB-213ENST00000492512 RFX5P48382 616 aaPredicted RBP17.11■□□□□ 0.33
GPNMB-213ENST00000492512 ATP2B3Q16720 1220 aa17.11■□□□□ 0.33
GPNMB-213ENST00000492512 NECAB2Q7Z6G3 386 aa17.11■□□□□ 0.33
GPNMB-213ENST00000492512 MRPL50Q8N5N7 158 aaKnown RBP17.11■□□□□ 0.33
GPNMB-213ENST00000492512 IDI2Q9BXS1 227 aa17.11■□□□□ 0.33
GPNMB-213ENST00000492512 DENND2AQ9ULE3 1009 aa17.11■□□□□ 0.33
GPNMB-213ENST00000492512 PTPRCP08575 1304 aa17.11■□□□□ 0.33
GPNMB-213ENST00000492512 SALL1Q9NSC2 1324 aa17.11■□□□□ 0.33
GPNMB-213ENST00000492512 CTNND1O60716 968 aaKnown RBP17.1■□□□□ 0.33
GPNMB-213ENST00000492512 ATG9AQ7Z3C6 839 aa17.1■□□□□ 0.33
GPNMB-213ENST00000492512 CRISPLD2Q9H0B8 497 aa17.1■□□□□ 0.33
GPNMB-213ENST00000492512 SEMA3EO15041 775 aa17.09■□□□□ 0.33
GPNMB-213ENST00000492512 MAP3K10Q02779 954 aa17.09■□□□□ 0.33
GPNMB-213ENST00000492512 SH3BP5LQ7L8J4 393 aa17.09■□□□□ 0.33
GPNMB-213ENST00000492512 ZGPATQ8N5A5 531 aaKnown RBP17.09■□□□□ 0.33
GPNMB-213ENST00000492512 ANKRD13CQ8N6S4 541 aa17.09■□□□□ 0.33
GPNMB-213ENST00000492512 SIL1Q9H173 461 aa17.09■□□□□ 0.33
GPNMB-213ENST00000492512 CEP126Q9P2H0 1117 aa17.09■□□□□ 0.33
GPNMB-213ENST00000492512 PNMA3Q9UL41 463 aa17.09■□□□□ 0.33
GPNMB-213ENST00000492512 AGTPBP1Q9UPW5 1226 aa17.09■□□□□ 0.33
GPNMB-213ENST00000492512 DDTLA6NHG4 134 aaPredicted RBP17.08■□□□□ 0.32
GPNMB-213ENST00000492512 PHKA1P46020 1223 aa17.08■□□□□ 0.32
GPNMB-213ENST00000492512 DZIP1Q86YF9 867 aaKnown RBP17.08■□□□□ 0.32
GPNMB-213ENST00000492512 DIS3LQ8TF46 1054 aaKnown RBP17.08■□□□□ 0.32
GPNMB-213ENST00000492512 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.08■□□□□ 0.32
GPNMB-213ENST00000492512 FBXO3Q9UK99 471 aa17.08■□□□□ 0.32
GPNMB-213ENST00000492512 RFX7Q2KHR2 1363 aa17.07■□□□□ 0.32
GPNMB-213ENST00000492512 GAKO14976 1311 aa17.07■□□□□ 0.32
GPNMB-213ENST00000492512 SLURP2P0DP57 97 aa17.07■□□□□ 0.32
GPNMB-213ENST00000492512 BMP8BP34820 402 aa17.07■□□□□ 0.32
GPNMB-213ENST00000492512 PICALMQ13492 652 aa17.07■□□□□ 0.32
GPNMB-213ENST00000492512 FAM110CQ1W6H9 321 aa17.07■□□□□ 0.32
GPNMB-213ENST00000492512 CCDC84Q86UT8 332 aaPredicted RBP17.07■□□□□ 0.32
GPNMB-213ENST00000492512 SLF2Q8IX21 1173 aa17.07■□□□□ 0.32
GPNMB-213ENST00000492512 C7orf61Q8IZ16 206 aa17.07■□□□□ 0.32
GPNMB-213ENST00000492512 ANKLE1Q8NAG6 615 aa17.07■□□□□ 0.32
GPNMB-213ENST00000492512 GDF15Q99988 308 aa17.07■□□□□ 0.32
GPNMB-213ENST00000492512 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.07■□□□□ 0.32
GPNMB-213ENST00000492512 CIAO1O76071 339 aa17.06■□□□□ 0.32
GPNMB-213ENST00000492512 HMGCRP04035 888 aa17.06■□□□□ 0.32
GPNMB-213ENST00000492512 TREML2Q5T2D2 321 aa17.06■□□□□ 0.32
GPNMB-213ENST00000492512 DDX4Q9NQI0 724 aaKnown RBP17.06■□□□□ 0.32
GPNMB-213ENST00000492512 ABCF2Q9UG63 623 aa17.06■□□□□ 0.32
GPNMB-213ENST00000492512 ZMYND8Q9ULU4 1186 aaPredicted RBP17.06■□□□□ 0.32
GPNMB-213ENST00000492512 GCLCP48506 637 aaPredicted RBP17.05■□□□□ 0.32
GPNMB-213ENST00000492512 MNX1P50219 401 aaPredicted RBP17.05■□□□□ 0.32
GPNMB-213ENST00000492512 GPR153Q6NV75 609 aa17.05■□□□□ 0.32
GPNMB-213ENST00000492512 PROCA1Q8NCQ7 364 aaPredicted RBP17.05■□□□□ 0.32
GPNMB-213ENST00000492512 NBPF3Q9H094 633 aa17.05■□□□□ 0.32
GPNMB-213ENST00000492512 HMX1Q9NP08 348 aaPredicted RBP17.05■□□□□ 0.32
GPNMB-213ENST00000492512 RPTORQ8N122 1335 aa17.04■□□□□ 0.32
GPNMB-213ENST00000492512 ANP32CO43423 234 aa17.04■□□□□ 0.32
GPNMB-213ENST00000492512 IL15P40933 162 aaPredicted RBP17.04■□□□□ 0.32
GPNMB-213ENST00000492512 BTDP43251 543 aa17.04■□□□□ 0.32
GPNMB-213ENST00000492512 CCDC102BQ68D86 513 aa17.04■□□□□ 0.32
GPNMB-213ENST00000492512 FAM9BQ8IZU0 186 aa17.04■□□□□ 0.32
GPNMB-213ENST00000492512 DEFB123Q8N688 67 aa17.04■□□□□ 0.32
GPNMB-213ENST00000492512 SSH1Q8WYL5 1049 aa17.04■□□□□ 0.32
GPNMB-213ENST00000492512 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.04■□□□□ 0.32
GPNMB-213ENST00000492512 ATAD5Q96QE3 1844 aa17.04■□□□□ 0.32
GPNMB-213ENST00000492512 LOC285556D6RIA3 1793 aa17.04■□□□□ 0.32
GPNMB-213ENST00000492512 TBC1D12O60347 775 aa17.03■□□□□ 0.32
GPNMB-213ENST00000492512 UBTFL1P0CB47 393 aaPredicted RBP17.03■□□□□ 0.32
GPNMB-213ENST00000492512 ADORA1P30542 326 aa17.03■□□□□ 0.32
GPNMB-213ENST00000492512 SPP2Q13103 211 aa17.03■□□□□ 0.32
GPNMB-213ENST00000492512 PABPC4Q13310 644 aaKnown RBP eCLIP17.03■□□□□ 0.32
GPNMB-213ENST00000492512 SPTY2D1Q68D10 685 aaPredicted RBP17.03■□□□□ 0.32
GPNMB-213ENST00000492512 FAM163AQ96GL9 167 aaPredicted RBP17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms